The phylogenetic placement of Hollandichthys Eigenmann 1909 (Teleostei: Characidae) and related genera

The phylogenetic relationships among characids are complex with many genera remaining of uncertain systematic position inside the family. The genus Hollandichthys is one of these problematic genera. It has been considered as incertae sedis inside this family until two recently published phylogenies, one morphological and one molecular, arrived at alternative hypothesizes as to the relationships of Hollandichthys with Pseudochalceus or Rachoviscus, respectively. In this paper, we infer the phylogenetic relations of these taxa based on five genes (three mitochondrial - COI, ND2 and 16S; and two nuclear - Sia and Trop), totaling up to 2719 bp. The 41 analyzed species in the Characidae include four incertae sedis characid taxa once hypothesized as related to Hollandichthys, but never analyzed in a single phylogeny (Rachoviscus, Pseudochalceus, Nematocharax and Hyphessobrycon uruguayensis). Here we propose Rachoviscus as the sister-group of Hollandichthys, grouped in the large clade C previously defined, along with the remaining incertae sedis taxa studied here. In addition, we support the evidence that insemination evolved independently at least three times in the Characidae.     

Diversity of extinct and living actinistian fishes (Sarcopterygii)

Synopsis A total of 121 actinistian species belonging to 47 genera and 17 undetermined actinistians is reported from the literature. There are 69 valid species with fair assessment of their phylogenetic position; 21 valid species with poor assessment of their phylogenetic position; 31 actinistian incertae sedis; and 18 taxa that had been identified incorrectly as actinistians or are nomen nuda. The fossil record of the actinistians covers a history of approximately 380 million years. The greatest diversity occurred during the Scythian (Early Triassic).     

A Total Evidence Phylogeny of the Arctoidea (Carnivora: Mammalia): Relationships Among Basal Taxa

A total evidence phylogenetic analysis was performed for 14 extant and 18 fossil caniform genera using a data matrix of 5.6 kbp of concatenated sequence data from six independent loci and 80 morphological characters from the cranium and dentition. Maximum parsimony analysis recovered a single most parsimonious cladogram (MPC). The topology of the extant taxa in the MPC agreed with previous molecular phylogenies. Phylogenetic positions for fossil taxa indicate that several taxa previously described as early members of extant families (e.g., Bathygale and Plesictis) are likely stem taxa at the base of the Arctoidea. Taxa in the “Paleomustelidae” were found to be paraphyletic, but a monophyletic Oligobuninae was recovered within this set of taxa. This clade was closely related to the extant genera Gulo and Martes, therefore, nested within the extant radiation of the family Mustelidae. This analysis provides a resolution to several discrepancies between phylogenies considering either fossil taxa or extant taxa separately, and provides a framework for incorporating fossil and extant taxa into comprehensive combined evidence analyses.     

Thecamoebians from Late Permian Gondwana sediments of peninsular India

The evolutionary history of thecamoebians (testate amoebae) extends back to the Neoproterozoic Era. However, until now, these have had a restricted, discontinuous and modest record across the world. The studied sediment of Raniganj Formation (Godavari Graben), Andhra Pradesh, India has been assigned as Late Permian on the basis of co-occurring age-diagnostic Late Permian palynomorphs. About sixteen thecamoebian species and one taxon incertae sedis have been recorded here in the palynological slides on the basis of shell morphology and morphometry. Out of these, five belong to the family Arcellidae, seven to Centropyxidae, two to Trigonopyxidae, one to Difflugiidae, one to Plagiopyxidae, and one is regarded incertae sedis. The morphometric characteristics of fossil forms resemble their corresponding extant species studied from ecologically diverse fresh water wetlands in India. In general, the ratio of shell diameter and aperture diameter of Late Permian fossil and extant specimens show significant correlation in all the studied species. Except that, the ratio of shell length and breadth is the distinguishing feature between Centropyxis aerophila and C. aerophila ‘sylvatica’, rather than the ratio of shell length and longest diameter of the shell aperture in both fossil and extant forms. The study elucidates the minimal morphological evolution in thecamoebians and their survival during mass extinction periods and stressful environmental conditions over the geological timescale.     

Of teeth and trees: A fossil tip‐dating approach to infer divergence times of extinct and extant squaliform sharks

Fossil tip‐dating allows for the inclusion of morphological data in divergence time estimates based on both extant and extinct taxa. Neoselachii have a cartilaginous skeleton, which is less prone to fossilization compared to skeletons of Osteichthyans. Therefore, the majority of the neoselachian fossil record is comprised of single teeth, which fossilize more easily. Neoselachian teeth can be found in large numbers as they are continuously replaced. Tooth morphologies are of major importance on multiple taxonomic levels for identification of shark and ray taxa. Here, we review dental morphological characters of squalomorph sharks and test these for their phylogenetic signal. Subsequently, we combine DNA sequence data (concatenated exon sequences) with dental morphological characters from 85 fossil and extant taxa to simultaneously infer the phylogeny and re‐estimate divergence times using information of 61 fossil tip‐dates as well as eight node age calibrations of squalomorph sharks. Our findings show that the phylogenetic placement of fossil taxa is mostly in accordance with their previous taxonomic allocation. An exception is the phylogenetic placement of the extinct genus ?Protospinax , which remains unclear. We conclude that the high number of fossil taxa as well as the comprehensive DNA sequence data for extant taxa may compensate for the limited number of morphological characters identifiable on teeth, serving as a backbone for reliably estimating the phylogeny of both extinct and extant taxa. In general, tip‐dating mostly estimates older node ages compared to previous studies based on calibrated molecular clocks.     

Past and present diversity and distribution in the parasitic wasp family Megalyridae (Hymenoptera)

The phylogenetic relationships of extant and extinct Megalyridae are analysed at the genus level. The dataset comprises seven outgroup taxa, all eight extant genera and a number of extinct taxa that have been associated with Megalyridae, including two genera from Maimetshidae, whose affinity with Megalyridae is uncertain. Analytical results are unstable because some of the fossil taxa have many missing entries. The most stable results are produced when the maimetshid taxa and Cretodinapsis are excluded. When included, these taxa fall outside crown‐group Megalyridae, the maimetshid taxa being the sister of Orthogonalys (Trigonalidae). Based on the results of our analyses, we synonymize the fossil genera Rubes Perrichot n.syn . and Ukrainosa Perrichot & Perkovsky n.syn . with Prodinapsis, creating the new combinations Prodinapsis bruesi n.comb . and Prodinapsis prolata n.comb . When comparing past and present distributions of Megalyridae with the results of the phylogenetic analyses, it is evident that the genera radiated in the Mesozoic, and that the family as a whole was much more widespread then. The present‐day distribution is essentially relictual, with range contraction since the early Tertiary probably being the result of climate deterioration, which caused the disappearance of tropical forests throughout the Palaearctic.     

Evolution of Philopotinae,with a revision and phylogeny of the New World spider fly genus Philopota Wiedemann (Diptera,Acroceridae)

Philopotinae are hunchbacked spider flies represented by 63 fossil and extant species in 15 genera worldwide. Philopota Wiedemann, 1830, is the most species‐rich genus within the subfamily. Here, the evolution of Philopotinae is discussed, and a revision and phylogeny of Philopota based on adult morphology are presented. Nine of the 12 extant Philopotinae genera were included in our analysis, and 22 species were recognized in Philopota, of which 13 are described as new. Seven new synonymies are proposed. The phylogenetic analysis included 33 terminal taxa (22 ingroup and 11 outgroup species) and used 53 morphological characters, resulting in a single most parsimonious tree under equal weights. The monophyly of Philopota is recovered, and the Palaearctic genus Oligoneura is hypothesized as its sister‐group.     

A combined evidence phylogenetic analysis of Anguimorpha (Reptilia: Squamata)

Anguimorpha is a clade of limbed and limbless squamates with ca. 196 extant species and a known fossil record spanning the past 130 million years. Morphology‐based and molecule‐based phylogenetic analyses disagree on several key points. The analyses differ consistently in the placements of monstersaurs (e.g. Gila Monsters), shinisaurs (Crocodile Lizards), the anguid Anniella (American Legless Lizards), carusioids (Knobby Lizards), and the major clades within Varanus (Monitor Lizards). Given different data sources with such different phylogenetic hypotheses, Anguimorpha is an excellent candidate for a combined phylogenetic analysis. We constructed a data matrix consisting of 175 fossil and extant anguimorphs, and 2281 parsimony‐informative characters (315 morphological characters and 1969 molecular characters). We analysed these data using the computer program TNT using the “new technology search” with the ratchet. Our result is novel and shows similarities with both morphological and molecular trees, but is identical to neither. We find that a global combined evidence analysis (GCA) does not recover a holophyletic Varanoidea, but omission of fossil taxa reveals cryptic molecular support for that group. We describe these results and others from global morphological analysis, extant‐only morphological analysis, molecular data‐only analyses, combined evidence analysis of extant taxa, and GCA. © The Willi Hennig Society 2010.     

Phylogeny of the North American catfish family Ictaluridae (Teleostei: Siluriformes) combining morphology,genes and fossils

We performed the first combined‐data phylogenetic analysis of ictalurids including most living and fossil species. We sampled 56 extant species and 16 fossil species representing outgroups, the seven living genera, and the extinct genus ?Astephus long thought to be an ictalurid. In total, 209 morphological characters were curated and illustrated in MorphoBank from published and original work, and standardized using reductive coding. Molecular sequences harvested from GenBank for one nuclear and four mitochondrial genes were combined with the morphological data for total evidence analysis. Parsimony analysis recovers a crown clade Ictaluridae composed of seven living genera and numerous extinct species. The oldest ictalurid fossils are the Late Eocene members of Ameiurus and Ictalurus. The fossil clade ?Astephus placed outside of Ictaluridae and not as its sister taxon. Previous morphological phylogenetic studies of Ictaluridae hypothesized convergent evolution of troglobitic features among the subterranean species. In contrast, we found morphological evidence to support a single clade of the four troglobitic species, the sister taxon of all ictalurids. This result holds whether fossils are included or not. Some previously published clock‐based age estimates closely approximate our minimum ages of clades.     

A molecular phylogeny of Glaphyridae (Coleoptera: Scarabaeoidea): evolution of pollination and association with ‘Poppy guild’ flowers

Among Scarabaeoidea, pollen feeding occurs in two major lineages, pleurostict Scarabaeidae and Glaphyridae. Here we infer for the first time the phylogeny of the scarabaeoid lineage Glaphyridae (Coleoptera) based on molecular data using partial gene sequences for 28S rRNA, cytochrome oxidase I (cox1) and 16S rRNA (rrnL) for 41 species. Based on the resulting tree topology, we inferred the timing of the origin of pollination and of their coevolution with different flower host taxa, with particular focus on the prominent red-coloured ‘poppy guild’ flowers. All genera of Glaphyridae that were sampled with multiple species were recovered as monophyletic. According to this analysis, the origin of Glaphyridae was around 140 Ma, while crown group divergence was dated to have occurred c. 112 Ma. Pollen feeding originated in Glaphyridae only once and much later than in other important pollinator groups, between 97 and 67 Ma. According to the reconstruction of ancestral feeding traits, Asteraceae (Cicharioidae) were the first hosts of Glaphyridae. Presumably, a further adaptive radiation was triggered by feeding on and pollination of red flowers (poppy guild) which arose at a later stage. It occurred for the first time between 30 and 40 Ma, whereby the clades that use red Ranunculaceae (Pygopleurus spp.) are older than clades using exclusively red Papaveraceae (Eulasia spp.) (25–30 Ma). The rather young age of red Ranunculaceae would imply that Pygopleurus species only subsequently used red Ranunculus species as flower hosts, and that a broad parallel host shift probably from red Papaver spp. to red Ranunculus asiaticus has occurred rather recently.     

Early evolution of Cupedidae revealed by a mid‐Cretaceous reticulated beetle from Myanmar (Coleoptera: Archostemata)

Cupedidae, the most species‐rich family of the archaic suborder Archostemata, were abundant, diverse and widespread in the Mesozoic, yet little is known about the early evolution and biogeography. This stems, in part, from a lack of exceptionally preserved fossils from the Mesozoic and of formal phylogenetic study of both extant and extinct taxa. Here we describe and illustrate a new fossil from mid‐Cretaceous Burmese amber, and provide a phylogeny combining both fossils and all known extant genera of Archostemata. A dataset of 43 ingroup taxa and four outgroup taxa based on 110 morphological characters was analysed under parsimony. The results indicate that Priacma LeConte and Paracupes Kolbe, as well as the Cretaceous genera Barbaticupes Jarzembowski et al. and Mallecupes Jarzembowski et al., together form a sister clade to the rest of Cupedidae. Priacma megapuncta sp.n. is attributed to the relict North American Priacma by the presence of distinct subtruncate elytral apices, lateral elytral margins with two rows of sharp teeth, and peculiar fixing epipleural folds near the elytral apices. Our discovery of the first fossil species of Priacma in Burmese amber reveals the antiquity and wider distribution of the genus in the late Mesozoic. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:313565C2‐4F42‐48BD‐8720‐F379DE202868 .     

The Taxonomic and Evolutionary History of Fossil and Modern Balaenopteroid Mysticetes

Balaenopteroids (Balaenopteridae + Eschrichtiidae) are a diverse lineage of living mysticetes, with seven to ten species divided between three genera (Megaptera, Balaenoptera and Eschrichtius). Extant members of the Balaenopteridae (Balaenoptera and Megaptera) are characterized by their engulfment feeding behavior, which is associated with a number of unique cranial, mandibular, and soft anatomical characters. The Eschrichtiidae employ suction feeding, which is associated with arched rostra and short, coarse baleen. The recognition of these and other characters in fossil balaenopteroids, when viewed in a phylogenetic framework, provides a means for assessing the evolutionary history of this clade, including its origin and diversification. The earliest fossil balaenopterids include incomplete crania from the early late Miocene (7–10 Ma) of the North Pacific Ocean Basin. Our preliminary phylogenetic results indicate that the basal taxon, “Megaptera” miocaena should be reassigned to a new genus based on its possession of primitive and derived characters. The late late Miocene (5–7 Ma) balaenopterid record, except for Parabalaenoptera baulinensis and Balaenoptera siberi, is largely undescribed and consists of fossil specimens from the North and South Pacific and North Atlantic Ocean basins. The Pliocene record (2–5 Ma) is very diverse and consists of numerous named, but problematic, taxa from Italy and Belgium, as well as unnamed taxa from the North and South Pacific and eastern North Atlantic Ocean basins. For the most part Pliocene balaenopteroids represent extinct species and genera and reveal a greater degree of morphological diversity than at present. The Pleistocene record is very limited and, unfortunately, fails to document the evolutionary details leading to modern balaenopteroid species diversity. It is evident, however, that most extant species evolved during the Pleistocene. Morphological and molecular based phylogenies support two competing hypotheses concerning relationships within the Balaenopteroidea: (1) balaenopterids and eschrichtiids as sister taxa, and (2) eschrichtiids nested within a paraphyletic Balaenopteridae. The addition of fossil taxa (including a new Pliocene species preserving a mosaic of balaenopterid and eschrichtiid characters) in morphological and “total evidence” analyses, offers the potential to resolve the current controversy concerning the possible paraphyly of Balaenopteridae.     

Fossil flowers and fruits of the Actinidiaceae from the Campanian (Late Cretaceous) of Georgia

A new genus and species of Actinidiaceae (Parasaurauia allonensis gen. et sp. nov.) are established for fossil flowers and fruits from the early Campanian (Late Cretaceous) Buffalo Creek Member of the Gaillard Formation in central Georgia, USA. The fossil flowers, which are exquisitely preserved as charcoal, have five imbricate, quincuncially arranged sepals and petals. The androecium consists of ten stamens with anthers that are deeply sagittate proximally. The gynoecium is tricarpellate, syncarpous, and has three free styles that emerge from an apical depression in the ovary. The fruit is trilocular and contains numerous ovules on intruded axile placentae. The structure of mature fruits is unknown. Comparisons with extant taxa clearly demonstrate that the affinities of Parasaurauia allonensis are with the Ericales, and particularly with the Actinidiaceae, which have been placed among the Ericales in recent cladistic analyses. Because Parasaurauia allonensis is not identical to any one genus of Actinidiaceae, or other member of the Ericales, phylogenetic relationships of the fossil were evaluated through a cladistic analysis using morphological and anatomical characters. Results of this analysis place Parasaurauia allonensis within the Actinidiaceae as sister to the extant genera Saurauia and Actinidia. Parasaurauia allonensis differs from extant Saurauia only in having ten rather than numerous stamens.     

An examination of the Phascolosotna subgenera Antillesoma, Rueppellisoma and Satonus (Sipuncula)

Three of the subgenera in the sipunculan genus Phascolosoma are reviewed, based on examination of type material. The presumed difference between the subgenera Antillesoma and Rueppellisoma (number of retractor muscles) is shown to be invalid and the taxa are therefore synonymous. The 15 species are either considered junior synonyms of P. antillarum (eight), transferred to other species or genera (six), or considered incertae sedis (one). Phascolosoma antillarum is redescribed. Of the eight species in the subgenus Satonus, only P. pectinatum remains valid: the others are considered either to belong to other taxa (four) or to be incertae sedis (three).     

TWO NEW PARROTS (PSITTACIFORMES) FROM THE LOWER EOCENE FUR FORMATION OF DENMARK

Abstract:  Two new fossil psittaciform birds from the Lower Eocene 'Mo Clay' (Fur Formation) of Denmark ( c . 54 Ma) are described. An unnamed specimen is assigned to the extinct avian family of stem-group parrots, Pseudasturidae (genus and species incertae sedis ), while a second ( Mopsitta tanta gen. et sp. nov.) is the largest fossil parrot yet known. Both specimens are the first fossil records of these birds from Denmark. Although the phylogenetic position of Mopsitta is unclear (it is classified as family incertae sedis ), this form is phylogenetically closer to Recent Pstittacidae than to other known Palaeogene psittaciforms and may, therefore, represent the oldest known crown-group parrot.     

Wiederaufstellung der Gattung Sericopelma Ausserer, 1875 (Araneida,Theraphosidae, Theraphosinae)

After the examination of the types of Mygalarachne brevipes Ausserer, 1871, and Sericopelma rubronitens Ausserer, 1875, we declare M. brevipes, a juvenile female, as a species “incertae sedis” since the specimen doesn't present sufficient characteristics which allow a secure identification of the genera and species.     

New rodents (Mammalia) from the late Oligocene of Cabeza Blanca (Chubut) and the first rodent radiation in Patagonia

Caviomorph rodents, the New World Hystricognathi, are one of the most characteristic groups of South American mammals. Although they have been in the continent at least since the middle Eocene, those of the Deseadan Land mammal Age (early–late Oligocene) are the best source to understanding their early history due of their good record, large geographic distribution and good temporal calibration of many of the local faunas. Here, we describe the following new taxa from the classical locality of Cabeza Blanca: Octodontoidea Acaremyidae Galileomys baiosn. sp., Octodontoidea incertae sedis Ethelomys loomisin. gen.,n. comb., Acarechimys leucotheaen. sp., Protacaremys? adilosn. sp., Chinchilloidea incertae sedis Loncolicu tretosn. gen., n. sp., Incamys menniorumn. sp., Caviomorpha incertae sedis Llitun notucan. gen., n. sp., Leucokephalos zeffiaen. gen., n. sp. and Cephalomyidae Cephalomys ceciaen. sp. The DP4 of an ‘eocardiid’, Asteromys punctus? is described for the first time. These new taxa allow us to reinterpret the relationships of some of the previously known Deseadan species and genera. They show a great early diversification at least for extra Andean Patagonia, involving at least three of the main caviomorph lineages: octodontoids, chinchilloids and cavioids.     

Phylogenetic relationships and estimation of divergence times among Sisoridae catfishes

Nineteen taxa representing 10 genera of Sisoridae were subjected to phylogenetic analyses of sequence data for the nuclear genes Plagl2 and ADNP and the mitochondrial gene cytochrome b. The three data sets were analyzed separately and combined into a single data set to reconstruct phylogenetic relationships among Chinese sisorids. Both Chinese Sisoridae as a whole and the glyptosternoid taxa formed monophyletic groups. The genus Pseudecheneis is likely to be the earliest diverging extant genus among the Chinese Sisoridae. The four Pareuchiloglanis species included in the study formed a monophyletic group. Glaridoglanis was indicated to be earliest diverging glyptosternoid, followed by Glyptosternon maculatum and Exostoma labiatum. Our data supported the conclusion that Oreoglanis and Pseudexostoma both formed a monophyletic group. On the basis of the fossil record and the results of a molecular dating analysis, we estimated that the Sisoridae diverged in the late Miocene about 12.2 Mya. The glyptosternoid clade was indicated to have diverged, also in the late Miocene, about 10.7 Mya, and the more specialized glyptosternoid genera, such as Pareuchiloglanis, originated in the Pleistocene (within 1.9 Mya). The speciation of glyptosternoid fishes is hypothesized to be closely related with the uplift of the Qinghai-Tibet Plateau.     

Weighted parsimony phylogeny of the family Characidae (Teleostei: Characiformes)

The family Characidae, including more than 1000 species, lacks a phylogenetic diagnosis, with many of its genera currently considered as incertae sedis . The aims of the present study are to propose a phylogenetic diagnosis and to assess higher-level relationships of and within Characidae. In this regard, 360 morphological characters are studied for 160 species of Characidae and related families. Phylogenetic analyses under implied weighting and self-weighted optimization are presented, exploring a broad range of parameters. The analysis under self-weighted optimization is innovative for this size of matrices. Familial status of Serrasalmidae is supported, and Acestrorhynchidae and Cynodontidae are included in a monophyletic Characidae. Engraulisoma taeniatum is transferred from Characidae to Gasteropelecidae. Thus constituted, the monophyly of Characidae is supported by seven synapomorphies. A new subfamily, Heterocharacinae, is proposed, and the subfamilies Aphyocharacinae, Aphyoditeinae, Characinae, Gymnocharacinae, and Stevardiinae are redefined. The Glandulocaudinae are included in Stevardiinae together with remaining members of "clade A" ( sensu Malabarba and Weitzman, 2003 . Comun. Mus. Ciênc. Tecnol. PUCRS, Sér. Zool. 16, 67–151.) and the genera Aulixidens and Nantis . Most incertae sedis genera are assigned, at least tentatively, to a phylogenetically diagnosed clade.