共查询到20条相似文献，搜索用时 15 毫秒
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Austin Alleman Marah Stoldt Barbara Feldmeyer Susanne Foitzik 《Molecular ecology》2019,28(9):2342-2359
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Qian Zhao Jianzhong Wu Liyan Zhang Lizhen Xu Chao Yan Zhenping Gong 《Journal of Phytopathology》2019,167(1):41-55
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W.‐M. Xiao M.‐C. Zhao M. Zou Y.‐D. Tan X.‐G. Zhang 《Plant biology (Stuttgart, Germany)》2014,16(3):539-549
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Sophora japonica is a traditional Chinese medicinal ingredient that is widely used in the medicine, food, and industrial dye industries. Since flavonoids are the main components of S. japonica, studying the flavonoid composition and content of this plant is important. This study aimed to identify molecules involved in the flavonoid biosynthetic pathways in S. japonica. Deep sequencing was performed, and 85,877,352 clean reads were filtered from 86,095,152 raw reads. The clean reads were spliced to obtain 111,382 unigenes, which were then annotated with NR, GO, KEGG, eggNOG. Differential expression analysis and NR function prediction revealed 18 differentially expressed unigenes associated with 13 enzymes in flavonoid biosynthetic pathways. Our results reveal new insights on secondary metabolite biosynthesis‐related genes in S. japonica and enhance the potential applications of S. japonica in genetic engineering. 相似文献
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Piotr Pupel Joanna Szabli&#x;ska‐Piernik Les&#x;aw B. Lahuta 《The Plant journal : for cell and molecular biology》2019,100(2):237-250
Methylated inositol, d ‐pinitol (3‐O‐methyl‐d ‐chiro‐inositol), is a common constituent in legumes. It is synthesized from myo‐inositol in two reactions: the first reaction, catalyzed by myo‐inositol‐O‐methyltransferase (IMT), consists of a transfer of a methyl group from S‐adenosylmethionine to myo‐inositol with the formation of d ‐ononitol, while the second reaction, catalyzed by d ‐ononitol epimerase (OEP), involves epimerization of d ‐ononitol to d ‐pinitol. To identify the genes involved in d ‐pinitol biosynthesis in a model legume Medicago truncatula, we conducted a BLAST search on its genome using soybean IMT cDNA as a query and found putative IMT (MtIMT) gene. Subsequent co‐expression analysis performed on publicly available microarray data revealed two potential OEP genes: MtOEPA, encoding an aldo‐keto reductase and MtOEPB, encoding a short‐chain dehydrogenase. cDNAs of all three genes were cloned and expressed as recombinant proteins in E. coli. In vitro assays confirmed that putative MtIMT enzyme catalyzes methylation of myo‐inositol to d ‐ononitol and showed that MtOEPA enzyme has NAD+‐dependent d ‐ononitol dehydrogenase activity, while MtOEPB enzyme has NADP+‐dependent d ‐pinitol dehydrogenase activity. Both enzymes are required for epimerization of d ‐ononitol to d ‐pinitol, which occurs in the presence of NAD+ and NADPH. Introduction of MtIMT, MtOEPA, and MtOEPB genes into tobacco plants resulted in production of d ‐ononitol and d ‐pinitol in transformants. As this two‐step pathway of d ‐ononitol epimerization is coupled with a transfer of reducing equivalents from NADPH to NAD+, we speculate that one of the functions of this pathway might be regeneration of NADP+ during drought stress. 相似文献
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Manuel Hiss Rasa M. Meskauskiene Muhammad A. Arif Eva L. Decker Anika Erxleben Wolfgang Frank Sebastian T. Hanke Daniel Lang Anja Martin Christina Neu Ralf Reski Sandra Richardt Mareike Schallenberg‐Rüdinger Peter Szövényi Theodhor Tiko Gertrud Wiedemann Luise Wolf Philip Zimmermann Stefan A. Rensing 《The Plant journal : for cell and molecular biology》2014,79(3):530-539
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Kwanho Jeong Abdul Baten Daniel L. E. Waters Omar Pantoja Cecile C. Julia Matthias Wissuwa Sigrid Heuer Tobias Kretzschmar Terry J. Rose 《Plant biotechnology journal》2017,15(1):15-26
The physiology and molecular regulation of phosphorus (P) remobilization from vegetative tissues to grains during grain filling is poorly understood, despite the pivotal role it plays in the global P cycle. To test the hypothesis that a subset of genes involved in the P starvation response are involved in remobilization of P from flag leaves to developing grains, we conducted an RNA‐seq analysis of rice flag leaves during the preremobilization phase (6 DAA) and when the leaves were acting as a P source (15 DAA). Several genes that respond to phosphate starvation, including three purple acid phosphatases (OsPAP3, OsPAP9b and OsPAP10a), were significantly up‐regulated at 15 DAA, consistent with a role in remobilization of P from flag leaves during grain filling. A number of genes that have not been implicated in the phosphate starvation response, OsPAP26, SPX‐MFS1 (a putative P transporter) and SPX‐MFS2, also showed expression profiles consistent with involvement in P remobilization from senescing flag leaves. Metabolic pathway analysis using the KEGG system suggested plastid membrane lipid synthesis is a critical process during the P remobilization phase. In particular, the up‐regulation of OsPLDz2 and OsSQD2 at 15 DAA suggested phospholipids were being degraded and replaced by other lipids to enable continued cellular function while liberating P for export to developing grains. Three genes associated with RNA degradation that have not previously been implicated in the P starvation response also showed expression profiles consistent with a role in P mobilization from senescing flag leaves. 相似文献
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Sébastien Renaut 《Molecular ecology》2013,22(9):2361-2363
Variation in patterns of gene expression contributes to phenotypic diversity and can ultimately predict adaptive responses. However, in many cases, the consequences of regulatory mutations on patterns of gene expression and ultimately phenotypic differences remain elusive. A standard way to study the genetic architecture of expression variation in model systems has been to map gene expression variation to genetic loci (Fig. 1a). At the same time, in many nonmodel species, especially for long‐lived organisms, controlled crosses are not feasible. If we are to expand our understanding of the role of regulatory mutations on phenotypes, we need to develop new methodologies to study species under ecologically relevant conditions. In this issue of Molecular Ecology, Verta et al. ( 2013 ) present a new approach to analyse gene expression variation and regulatory networks in gymnosperms (Fig. 1b). They capitalized on the fact that gymnosperm seeds contain an energy storage tissue (the megagametophyte) that is directly derived from a single haploid cell (the megaspore). The authors identified over 800 genes for which expression segregated in this maternally inherited haploid tissue. Based on the observed segregation patterns, these genes (Mendelian Expression Traits) are most probably controlled by biallelic variants at a single locus. Most of these genes also belonged to different regulatory networks, except for one large group of 180 genes under the control of a putative trans‐acting factor. In addition, the approach developed here may also help to uncover the effect of rare recessive mutations, which usually remain hidden in a heterozygous state in diploid individuals. The appeal of the work by Verta et al. ( 2013 ) to study gene expression variation is in its simplicity, which circumvents several of the hurdles behind traditional expression quantitative trait locus (eQTL) studies, and could potentially be applied to a large number of species. 相似文献
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阿维拉霉素(avilamycin, AVI)是一种寡糖类抗生素,因其具有较强的革兰氏阳性细菌抑制能力,被广泛应用于畜禽养殖。但传统的育种技术与不成熟的发酵工艺已成为限制其国产化的关键因素。基于已获得的利用核糖体工程技术改造的高产阿维拉霉素突变菌株,本研究采用比较代谢组学技术探究其与出发菌株的胞内代谢差异。利用GC-MS技术对发酵至第4、6、8天的菌丝体进行分析,共检测出112种化合物,经NIST谱库对比后精确匹配到29种胞内代谢物。二维主成分分析(principal component analysis, PCA)表明突变菌株与出发菌株的不同时间点代谢物有明显差异,通过正交偏最小二乘法判别分析(orthogonal partial least squares-discriminant analysis, OPLS-DA)得到11种胞内差异代谢物。KEGG代谢通路富集显示阿维拉霉素的合成主要与碳水化合物代谢和氨基酸代谢密切相关,且进一步筛选出6种关键差异代谢物：l-缬氨酸、l-丝氨酸、l-丙氨酸、d-半乳糖、d-纤维二糖和d-葡萄糖。突变菌株中这些代谢物的上调增强了其代谢流,使其在罐上发酵8 d时,阿维拉霉素产量较出发菌株提高76.86%。本研究的开展为后续阿维拉霉素发酵工艺理性优化提供了参考。 相似文献