Cats under cover: Habitat models indicate a high dependency on woodlands by Atlantic Forest felids

Four Neotropical small and medium felids—the ocelot, jaguarundi, margay, and southern tiger cat—have overlapping geographic distributions in the endangered Atlantic Forest. Local studies show that these felids avoid areas with high human impact, but the three smaller ones use human‐modified areas more frequently than do ocelots. To understand how landscape changes affect the habitat distribution of these four felids in the Atlantic Forest of Argentina, we used maximum entropy models to analyze the effect of environmental and anthropogenic factors. We estimated niche breadth and overlap among these felids. The conversion of the native forest to land uses without trees was the most important variable that determined the habitat distribution of the four species. For all four species, the optimal habitat covered about 1/3 of the study area and corresponds mainly to the native forest areas. Nearly 50% of these areas had some level of protection. The niche width was higher for the small felids than for ocelots. Niche overlap was high for all species pairs, but higher among the small felids and lower for each of these with the ocelot. The four felids were negatively affected by native forest loss, with ocelots being more sensitive than the smaller felids. The conversion of unprotected forest areas to other types of land uses would imply a greater habitat loss for these felids. The protection of current remnants of Atlantic Forest in Argentina is important for the long‐term conservation of the four felids. Abstract in Spanish is available with online material.     

Co‐occurrence of bobcats,coyotes, and ocelots in Texas

Interspecific competition among carnivores has been linked to differences in behavior, morphology, and resource use. Insights into these interactions can enhance understanding of local ecological processes that can have impacts on the recovery of endangered species, such as the ocelot (Leopardus pardalis). Ocelots, bobcats (Lynx rufus), and coyotes (Canis latrans) share a small geographic range overlap from South Texas to south‐central Mexico but relationships among the three are poorly understood. From May 2011 to March 2018, we conducted a camera trap study to examine co‐occurrence patterns among ocelots, bobcats, and coyotes on the East Foundation's El Sauz Ranch in South Texas. We used a novel multiseason extension to multispecies occupancy models with ≥2 interacting species to conduct an exploratory analysis to examine interspecific interactions and examine the potential effects of patch‐level and landscape‐level metrics relative to the occurrence of these carnivores. We found strong evidence of seasonal mutual coexistence among all three species and observed a species‐specific seasonal trend in detection. Seasonal coexistence patterns were also explained by increasing distance from a high‐speed roadway. However, these results have important ecological implications for planning ocelot recovery in the rangelands of South Texas. This study suggests a coexistence among ocelots, bobcats, and coyotes under the environmental conditions on the El Sauz Ranch. Further research would provide a better understanding of the ecological mechanisms that facilitate coexistence within this community. As road networks in the region expand over the next few decades, large private working ranches will be needed to provide important habitat for ocelots and other carnivore species.     

Factors influencing ocelot occupancy in Brazilian Atlantic Forest reserves

Over 80% of Atlantic Forest remnants are <50 ha and protected areas are embedded in a matrix dominated by human activities, undermining the long‐term persistence of carnivores. The ocelot (Leopardus pardalis) is an opportunistic species, but little is known about its tolerance to habitat alterations and the influence of other species on its occupancy in Atlantic Forest remnants. We used camera traps to assess ocelot occupancy in protected areas of Atlantic Forest in southeastern Brazil. We found a positive correlation between the occupancy of ocelots and top predators (jaguars, Panthera onca, and pumas, Puma concolor), and a weaker negative effect between the number of domestic dogs (Canis familiaris) detected and ocelot occupancy. Ocelot detection was higher at sites with more eucalyptus, suggesting that ocelots frequently use these areas. Better‐protected areas surrounded by permeable matrices may be critical to the persistence of ocelots in the fragmented Atlantic Forest.     

Species–area relationships and biodiversity loss in fragmented landscapes

To estimate species loss from habitat destruction, ecologists typically use species–area relationships, but this approach neglects the spatial pattern of habitat fragmentation. Here, we provide new, easily applied, analytical methods that place upper and lower bounds on immediate species loss at any spatial scale and for any spatial pattern of habitat loss. Our formulas are expressed in terms of what we name the ‘Preston function’, which describes triphasic species–area relationships for contiguous regions. We apply our method to case studies of deforestation and tropical tree species loss at three different scales: a 50 ha forest plot in Panama, the tropical city‐state of Singapore and the Brazilian Amazon. Our results show that immediate species loss is somewhat insensitive to fragmentation pattern at small scales but highly sensitive at larger scales: predicted species loss in the Amazon varies by a factor of 16 across different spatial structures of habitat loss.     

Habitat associations of exploited fish species in the Lower Amazon river–floodplain system

1. Modification of floodplain morphology and land use is widely recognized as a major threat to fish communities of river–floodplain systems. We assess habitat associations of major exploited fish species in the Lower Amazon, where modifications are more extensive than in the Central or Upper Amazon. 2. Habitat was characterized in terms of physical environment, vegetation cover, distance from river and mean depth. Habitat associations of late juvenile and adult fish of the 14 major exploited species were established by comparing the distribution of the habitat sampled with the distribution of the habitat sampled weighed by a fish abundance index (catch per unit of effort). 3. Eight species showed significant habitat associations, generally being most abundant in floodplain lakes. Five of these eight species were associated with open water. Of the three exceptions, two preferred flooded forest lakes and another macrophyte‐dominated channels. The majority of those species with significant associations also preferred waters shallower than 7.25 m and relatively distant from the river mainstream. 4. While flooded forest is often assumed to be a key habitat for Amazon fish, only two of the main exploited species in the Lower Amazon had a significant association with this habitat. The majority of exploited species, including one that is associated with flooded forest in the central and upper Amazon, either showed no habitat associations or preferred open water lakes. The full range of pristine and modified floodplain habitats should be considered as important to fish conservation and fisheries productivity.     

Jaguar Panthera onca Habitat Modeling in Landscapes Facing High Land‐use Transformation Pressure—Findings from Mato Grosso,Brazil

The modeling of top predators' habitats and the understanding of their environmental requirements in landscapes facing high land‐use transformation pressure have long‐standing importance for the development of conservation strategies. Multi‐distance spatial cluster analysis and logistic regression with environmental weighting for pseudo‐absence designation were applied to understand spatial patterns of jaguar occurrence in Mato Grosso state (Central Western Brazil). This location has been under intense deforestation pressure since the 1970s and is historically one of the most important jaguar habitats in the world. By using a model of five independent variables, we were able to achieve a 73.2 percent success rate of case/non‐case classification and indicate not only a general loss of habitat suitability, but also an increasing interruption of potential migration corridors in the state. Our analysis on a regional scale demonstrates the importance of forest and savannah woodland for jaguar habitat maintenance in the Mato Grosso state. The jaguar species demonstrates a sensitivity to landscape fragmentation, which can be parameterized for improved model building by metrics such as edge density and patch size. Comparisons with previous studies in South America show that parameter selection for jaguar habitat modeling is highly scale‐dependent and that habitat suitability in partially transformed landscapes could be maintained if fragmentation is minimized. Recent land‐use transformation, however, has significantly weakened the conservation status of the Pantanal‐Amazon corridor.     

First ocelot (Leopardus pardalis) monitored with GPS telemetry

We report the first study to monitor ocelot (Leopardus pardalis) spatial patterns with Global Positioning System (GPS) telemetry. The study area was in southern Texas in areas of dense thornshrub (closed habitat) and open grasslands interspersed with small patches of dense thornshrub cover (open habitat). We used a 200-g GPS-Posrec collar (Televilt, TVP Positioning AB, Lindesberg, Sweden). We obtained 61% of GPS fixes from the ocelot GPS collar. The ocelot preferred closed habitat, even with GPS bias against closed habitat, and used small patches and corridors of dense thornshrub. Due to the success of this pilot study, we recommend that GPS telemetry be used to monitor ocelots.     

SURVIVAL AND SOURCES OF MORTALITY IN OCELOTS

Abstract: Survival and cause-specific mortality estimates are needed to develop effective conservation strategies for the endangered ocelot (Leopardus pardalis) in the United States. We radiomonitored 80 ocelots (36 F, 44 M) from 1983 to 2002 and analyzed survival and cause-specific mortality rates. Pooled estimates of annual survival rates differed between resident (Ŝ = 0.87) and transient (Ŝ = 0.57) ocelots (P = 0.02); therefore, survival and cause-specific mortality analyses were partitioned for resident and transient ocelots. Sex-specific annual survival was similar between resident ocelots (M = 0.92, F = 0.83, P = 0.16) and transient ocelots (M = 0.53, F = 0.63, P = 0.75). Most mortalities were from human (e.g., ocelot-vehicle collisions; M = 45%) and natural (e.g., animal attack, disease; M = 35%) sources. Transient ocelots had higher natural mortality rates (disease, intraspecific mortality; M = 0.26) than resident ocelots (M = 0.04, P = 0.03). Other sources of mortality did not differ (P ≥ 0.10) between resident or transient ocelots or male and female resident or transient ocelots (P ≥ 0.08). Human population expansion within the Lower Rio Grande Valley of southern Texas, USA, will increase transportation-related problems and decrease the quantity of ocelot habitat, leading to increased ocelot-vehicle collisions and possibly cause more transient behavior, thus significantly lowering ocelot survival. Research and development of ocelot road underpasses should be conducted to mitigate ocelot-vehicle collisions.     

Avian ecological succession in the Amazon: A long‐term case study following experimental deforestation

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Logging and indigenous hunting impacts on persistence of large Neotropical animals

Areas allocated for industrial logging and community‐owned forests account for over 50% of all remaining tropical forests. Landscape‐scale conservation strategies that include these forests are expected to have substantial benefits for biodiversity, especially for large mammals and birds that require extensive habitat but that are susceptible to extirpation due to synergies between logging and hunting. In addition, their responses to logging alone are poorly understood due to their cryptic behavior and low densities. In this study, we assessed the effects of logging and hunting on detection and occupancy rates of large vertebrates in a multiple‐use forest on the Guiana Shield. Our study site was certified as being responsibly managed for timber production and indigenous communities are legally guaranteed use‐rights to the forest. We coupled camera‐trap data for wildlife detection with a spatially explicit dataset on indigenous hunting. A multi‐species occupancy model found a weak positive effect of logging on occupancy and detection rates, while hunting had a weak negative effect. Model predictions of species richness were also higher in logged forest sites compared to unlogged forest sites. Density estimates for jaguars and ocelots in our multiple‐use area were similar to estimates reported for fully protected areas. Involvement of local communities in forest management, control of forest access, and nesting production forests in a landscape that includes protected areas seemed important for these positive biodiversity outcomes. The maintenance of vertebrate species bodes well for both biodiversity and the humans that depend on multiple‐use forests.     

Effects of forest fragmentation on the lekking behavior of White-throated Manakins in Central Amazonia

Forest fragmentation can affect various aspects of population dynamics, but few investigators have assessed possible effects on the behavior of a species. Loss of habitat may limit population recruitment and abundance, which may alter breeding dynamics in forest remnants. We examined the lekking behavior of White-throated Manakins (Corapipo gutturalis) in a fragmented landscape to determine if forest fragmentation affected the spatial distribution of display courts and male behavior at courts. We captured and observed males at 19 courts located in 11 primary forests of different sizes in forest habitats of the Biological Dynamics of Forest Fragments Project area, an experimentally fragmented landscape located in the central Brazilian Amazon, and estimated their spatial distribution as the distance to the nearest court in the landscape. We quantified habitat loss using the proportion of forest cover surrounding courts and their distances to forest edges. No courts were detected in 1-ha forest fragments, suggesting direct effects from habitat loss following fragmentation that affected connectivity and thus recruitment and persistence of courts in the smallest fragments. The spatial distribution of display courts in forests larger than 10 ha remained unaltered, compared to display courts in continuous forests, but adult males were less numerous on courts with a higher percentage of forest cover and they displayed less on courts closer to forest edges. The spatial distribution of courts also contributed to variation in male social behavior, with more juvenile males present and adult males displaying at lower rates at more isolated courts. Although White-throated Manakins are locally common, the observed behavioral changes in response to habitat loss may affect their population dynamics. Our results show the importance of assessing behavioral changes in conservation programs and, in particular, of including biologically relevant measures of habitat loss in addressing its possible effects on species persistence in fragmented landscapes.     

Seasonal movements of river dolphins (Inia geoffrensis) in a protected Amazonian floodplain

Deliberate killing for use as bait in a regional catfish (Calophysus macropterus) fishery is the primary threat affecting the survival of the Amazon river dolphin, or boto (Inia geoffrensis). Establishing and improving freshwater protected areas has been suggested as a possible course of action to protect the species. However, the ecology of the boto is poorly understood and more information is needed on the species’ habitat use and movement patterns to ensure that spatial protection initiatives meet conservation needs. In this study, mark‐recapture/resight data collected in and near the Mamirauá Sustainable Development Reserve, a várzea in the Brazilian Amazon, was used to examine transition probabilities of botos between various habitat types. Our findings suggest that it is imperative that spatial protection initiatives focused on the boto take into account the importance of várzea habitat and bay systems for individuals in early life stages. Moreover, because botos frequently occupy the main rivers, particularly during the low water period, protecting areas of the main river waters adjacent to várzeas could aid in the protection of hunted populations.     

Factors influencing the habitat use by ocelots in one of the last large Atlantic Forest remnants in southeastern Brazil

Ocelots (Leopardus pardalis) are widely distributed throughout the Americas, being dependent on forested areas to survive. Although ocelot ecology is broadly studied throughout the species range distribution, studies concerning factors that may affect ocelot occupancy in the Atlantic Forest are still scarce. We used camera traps to evaluate factors influencing the probabilities of detection and occupancy of ocelots in a protected area of the Atlantic Forest, the Rio Doce State Park (RDSP), southeastern Brazil. To assess ocelot occupancy and detection probabilities, we measured the distances between sampling stations and rivers, lakes, cities, pasture, and Eucalyptus plantations. In addition, we recorded the mean rainfall levels for each sampling occasion, and native grassland areas within a 500 m‐buffer around each sampling station. We found a strong and positive association between ocelot detection and the dry season, which might be due to a higher number of individuals moving through the Park during this season. Moreover, we found a strong and positive association of ocelot detection with native grassland areas around lakes, which may be related to the ocelot behavior of searching for prey in these areas. Conversely, the ocelot occupancy probability was intermediate (Ψ^ = 0.53, 95% CI = 0.36–0.69) and was not strongly associated with the evaluated covariates, which may be explained by the high‐quality of forest habitats and water resources that are homogeneously distributed within the Park. Our study indicates that the RDSP still provides a structurally suitable forest habitat for ocelots, but because of the current worrying scenario of over fragmentation, reduction of forest cover, and weakness of the protective legislation of this biome, the long‐term persistence of the species in RDSP is uncertain.     

Genetic differences in the response to landscape fragmentation by a habitat generalist,the bobcat,and a habitat specialist,the ocelot

The ecology of a species strongly influences genetic variation and population structure. This interaction has important conservation implications because taxa with low dispersal capability and inability to use different habitats are more susceptible to anthropogenic stressors. Ocelots (Leopardus pardalis albescens) and bobcats (Lynx rufus texensis) are sympatric in Texas and northeastern Mexico; however, their ecology and conservation status are markedly different. We used 10 microsatellite loci and a 397-bp segment of the mitochondrial control region to examine how historical and ecological differences in these two species have influenced current patterns of genetic diversity in a landscape heavily altered by anthropogenic activities. Substantially higher genetic diversity (heterozygosity and haplotype diversity) and population connectivity was observed for bobcats in comparison to ocelots. The level of divergence among proximate ocelot populations (<30 km) was greater than between bobcat populations separated by >100 km. Ocelot populations in the US have never recovered from reductions experienced during the twentieth century, and their low genetic variation and substantial isolation are exacerbated by strong preference for dense native thornshrub and avoidance of open habitat. In contrast, despite continued legal harvesting and frequent road-related mortality, bobcats have maintained wide distribution, high abundance, and population connectivity. Our study illustrates that sympatric species with a similar niche can still have sufficient ecological differences to alter their response to anthropogenic change. Sensitive species, such as the ocelot, require additional conservation actions to sustain populations. Ecological differences among species occupying a similar guild are important to consider when developing conservation plans.     

Resource availability and disturbance shape maximum tree height across the Amazon

Tall trees are key drivers of ecosystem processes in tropical forest, but the controls on the distribution of the very tallest trees remain poorly understood. The recent discovery of grove of giant trees over 80 meters tall in the Amazon forest requires a reevaluation of current thinking. We used high‐resolution airborne laser surveys to measure canopy height across 282,750 ha of old‐growth and second‐growth forests randomly sampling the entire Brazilian Amazon. We investigated how resources and disturbances shape the maximum height distribution across the Brazilian Amazon through the relations between the occurrence of giant trees and environmental factors. Common drivers of height development are fundamentally different from those influencing the occurrence of giant trees. We found that changes in wind and light availability drive giant tree distribution as much as precipitation and temperature, together shaping the forest structure of the Brazilian Amazon. The location of giant trees should be carefully considered by policymakers when identifying important hot spots for the conservation of biodiversity in the Amazon.     

Isolation determines patterns of species presence in highly fragmented landscapes

In fragmented landscapes, changes in habitat availability, patch size, shape and isolation may affect survival of local populations. Proposing efficient conservation strategies for such species relies initially on distinguishing the particular effects of those factors. To address these issues, we investigated the occurrence of 3 bird species in fragmented Brazilian Atlantic Forest landscapes. Playback techniques were used to collect presence/absence data of these species inside 80 forest patches, and incidence models were used to infer their occupancy pattern from landscape spatial structure. The relative importance of patch size, shape and surrounding forest cover and isolation was assessed using a model selection approach based on maximum likelihood estimation. The presence of all species was in general positively affected by the amount of surrounding habitat and negatively affected by inter‐patch distances. The joint effects of patch size and the surrounding landscape characteristics were important determinants of occupancy for two species. The third species was affected only by forest cover and mean patch isolation. Our results suggest that local species presence is in general more influenced by the isolation from surrounding forests than by patch size alone. We found evidence that, in highly fragmented landscapes, birds that can not find patches large enough to settle may be able to overcome short distances through the matrix and include several nearby patches within their home‐ranges to complement their resource needs. In these cases, patches must be defined as functionally connected habitat networks rather than mere continuous forest segments. Bird conservation strategies in the Atlantic forest should focus on increasing patch density and connectivity, in order to implement forest networks that reduce the functional isolation between large remnants with remaining core habitat.     

Forest edges have high conservation value for bird communities in mosaic landscapes

A major conservation challenge in mosaic landscapes is to understand how trait‐specific responses to habitat edges affect bird communities, including potential cascading effects on bird functions providing ecosystem services to forests, such as pest control. Here, we examined how bird species richness, abundance and community composition varied from interior forest habitats and their edges into adjacent open habitats, within a multi‐regional sampling scheme. We further analyzed variations in Conservation Value Index (CVI), Community Specialization Index (CSI) and functional traits across the forest‐edge‐open habitat gradient. Bird species richness, total abundance and CVI were significantly higher at forest edges while CSI peaked at interior open habitats, i.e., furthest from forest edge. In addition, there were important variations in trait‐ and species‐specific responses to forest edges among bird communities. Positive responses to forest edges were found for several forest bird species with unfavorable conservation status. These species were in general insectivores, understorey gleaners, cavity nesters and long‐distance migrants, all traits that displayed higher abundance at forest edges than in forest interiors or adjacent open habitats. Furthermore, consistently with predictions, negative edge effects were recorded in some forest specialist birds and in most open‐habitat birds, showing increasing densities from edges to interior habitats. We thus suggest that increasing landscape‐scale habitat complexity would be beneficial to declining species living in mosaic landscapes combining small woodlands and open habitats. Edge effects between forests and adjacent open habitats may also favor bird functional guilds providing valuable ecosystem services to forests in longstanding fragmented landscapes.     

Ocelot Population Status in Protected Brazilian Atlantic Forest

Forest fragmentation and habitat loss are detrimental to top carnivores, such as jaguars (Panthera onca) and pumas (Puma concolor), but effects on mesocarnivores, such as ocelots (Leopardus pardalis), are less clear. Ocelots need native forests, but also might benefit from the local extirpation of larger cats such as pumas and jaguars through mesopredator release. We used a standardized camera trap protocol to assess ocelot populations in six protected areas of the Atlantic forest in southeastern Brazil where over 80% of forest remnants are < 50 ha. We tested whether variation in ocelot abundance could be explained by reserve size, forest cover, number of free-ranging domestic dogs and presence of top predators. Ocelot abundance was positively correlated with reserve size and the presence of top predators (jaguar and pumas) and negatively correlated with the number of dogs. We also found higher detection probabilities in less forested areas as compared to larger, intact forests. We suspect that smaller home ranges and higher movement rates in smaller, more degraded areas increased detection. Our data do not support the hypothesis of mesopredator release. Rather, our findings indicate that ocelots respond negatively to habitat loss, and thrive in large protected areas inhabited by top predators.     

Evaluating the use of macroscale variables as proxies for local aquatic variables and to model stream fish distributions

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The spatial scaling of saprotrophic fungal beta diversity in decomposing leaves

Assembly of fungal communities remains poorly understood in part because of the daunting range of spatial scales that may be involved in this process. Here, we use individual leaves as a natural sampling unit, comprising spatially distinct habitat and/or resource patches with unique histories and suites of resources. Spatial patterns in fungal beta diversity were tested for consistency with the metacommunity paradigms of species sorting and neutral dynamics. Thirty senesced leaves were collected from the forest floor (O horizon) in replicate upland forest, riparian forest and vernal pool habitats. We quantified spatial distance between leaves, and fungal community composition was assayed by terminal restriction fragment length polymorphism. Significant distance‐decay relationships were detected at all but one upland site. This is the first study where changes in fungal community composition were quantified across discrete adjacent habitat patches, providing evidence that fungal distance decay is operational at a scale of centimetres. Although leaves of differing lignin contents were sampled from each site, leaf type was not consistently important in explaining variation in fungal community composition. However, depth of a leaf within the forest floor significantly influenced community composition at five of six sites. Environmental heterogeneity associated with depth could include moisture gradients, relative influence of soil or spore colonization, and impact of forest floor biotic community (i.e. collembola and earthworms). Because the influence of spatial distance and depth on fungal community composition could not be disentangled, both species‐sorting and neutral processes may be embedded within the distance‐decay relationships that we found.