Rainfall‐Tuned Management Facilitates Dry Forest Recovery

Regeneration of original dry forests and shrublands in degraded arid and semiarid ecosystems can be a slow and difficult process. It has been hypothesized that restoration efforts during periods of increased water availability may potentially trigger shifts back to a high vegetation cover depending on several environmental factors that govern the response of vegetation to rainfall. Tuning restoration efforts to climate variability will likely become increasingly important under climate change conditions. The experiences evaluated here are a pioneering effort to reforest arid South American forests. We used a combination of field monitoring and remote sensing images to evaluate the long‐term effects of seeding and herbivore control in local reforestation projects tuned to the forecasted rainy El Niño Southern Oscillation (ENSO) events of 1991/1992 and 1997/1998 in North Peru and to assess the regional response of vegetation to these rainy events at a regional scale. We found that managing seed availability in combination with seedling protection from herbivores only yielded persistent higher vegetation cover when implemented on sites without calcareous layers and relatively high water availability determined by the surrounding topography. Our study shows that management tuned to forecasted rainfall events is able to trigger a long‐lasting shift toward higher vegetation cover. We provide a better insight in how environmental factors shape vegetation response to increased rainfall and discuss the implications for ecosystem resilience and restoration.     

Response of southern right whales to simulated swim‐with‐whale tourism at Península Valdés,Argentina

Guidelines for sustainable tourism involving swimming with large whales are not well‐developed compared to those focused on programs of swimming with delphinids. From September to November 2005 and August to September 2006, we collected behavioral and movement data for southern right whales (Eubalaena australis) exposed to interactions with boats and swimmers at Península Valdés, Argentina. Whales were tracked from shore using a theodolite before, during, and after a series of directed interactions with swimmers and a boat. Resting, socializing, and surface active behavior decreased, traveling increased, and whales swam faster and reoriented more often during interactions. Responses were variable by age/sex class, with mother/calf pairs showing strongest responses. Increased levels of tourism activity are a concern, as reduction in resting time and disruption of socialization among adults, juveniles, and mother/calf pairs have unknown long‐term consequences. Additional data should be collected for whale behavior in proposed tourism and nontourism areas to build a long‐term database which can be used to determine if reactions of whales change over time. Our data suggest that swimming with whales in Chubut Province should not be legalized until further investigations are completed, especially in light of the recent southern right whale die‐offs recorded in Península Valdés.     

Cost‐benefit analysis of acoustic recorders as a solution to sampling challenges experienced monitoring cryptic species

The inferences that can be made from any study are limited by the quality of the sampling design. By bad luck, when monitoring species that are difficult to detect (cryptic), sampling designs become dictated by what is feasible rather than what is desired. We calibrated and conducted a cost‐benefit analysis of four acoustic recorder options that were being considered as potential solutions to several sampling restrictions experienced while monitoring the Australasian bittern, a cryptic wetland bird. Such sampling restrictions are commonly experienced while monitoring many different endangered species, particularly those that are cryptic. The recorder options included mono and stereo devices, with two sound file processing options (visual and audible analysis). Recording devices provided call‐count data similar to those collected by field observers but at a fraction of the cost, which meant that “idealistic” sampling regimes, previously thought to be too expensive, became feasible for bitterns. Our study is one of the few to assess the monetary value of recording devices in the context of data quality, allowing trade‐offs (and potential solutions) commonly experienced while monitoring cryptic endangered species to be shown and compared more clearly. The ability to overcome challenges of monitoring cryptic species in this way increases research possibilities for data deficient species and is applicable to any species with similar monitoring challenges.     

Incubation failure and nest abandonment by Leach's Storm‐Petrels detected using PIT tags and temperature loggers

ABSTRACT The nocturnal activity of burrow‐nesting seabirds, such as storm‐petrels and shearwaters, makes it difficult to study their incubation behavior. In particular, little is known about possible differences in the incubation behavior of adults at successful and unsuccessful nests. We combined the use of passive integrated transponder (PIT) technology and nest‐temperature data loggers to monitor the incubation behavior of 10 pairs of Leach's Storm‐Petrels (Oceanodroma leucorhoa). The mean incubation bout length was 3.31 ± 0.59 (SD) days for individual adults at successful nests (N= 4) and 1.84 ± 1.16 d for individuals at unsuccessful nests (N= 6). Mean bout length for pairs in successful burrows (3.51 ± 0.56 d) did not differ significantly (P= 0.07) from that for pairs in unsuccessful burrows (1.80 ± 1.20 d), perhaps due to one failed nest with a high mean bout length (4.15 d). The total number of incubation bouts per parent (4.3 ± 1.9 bouts) did not differ with hatching success. Adults whose nests failed repeatedly exhibited truncated incubation bouts (< 12 h) prior to complete nest failure and were more likely than successful parents to make brief visits to nearby, occupied nesting burrows. Our results suggest that the decision by Leach's Storm‐Petrels to abandon a nest is not an abrupt one. Rather, failed nesting attempts may be characterized by truncated incubation bouts where individuals pay the energetic cost of travel to and from the burrow, but do not remain long enough to successfully incubate the egg.     

Observations and tracking of killer whales (Orcinus orca) with shore‐based X‐band marine radar at a marine energy test site

The Atlantic killer whale (Orcinus orca) is a top‐level marine predator with a global range, being found in all of Earth's oceans. The potential interaction between killer whales and marine renewable energy projects requires surveillance and monitoring efforts that call for new technologies, with marine radar showing promise in the field. Marine radar images recorded at the European Marine Energy Centre (EMEC) were used to track a pair of male killer whales undertaking Surface Active Behavior (SAB) with visual observations used as validation. Using a tidal prediction model, the tide‐adjusted, radar‐derived target speeds between SAB events provide estimates of swim speeds averaging 4 m/s and time between SAB events of 30 s. The similarities between the radar signatures of the animals and sea clutter, combined with their low occurrence compared to other imaged phenomena renders automatic detection with this system difficult. However, the combination of opportunistic radar imagery and independent visual observation has allowed the radar signature of one form of killer whale SAB to be documented. It is hoped that with a greater number of validated observations such as these that automated, radar‐based identification and the benefits it will bring to long‐term observations at MRE sites will be possible.     

Long‐term ecological monitoring and institutional memories

Many important ecological management issues can only be addressed by long‐term monitoring or through studies carried out over extended periods. But such studies require institutional settings that ensure funding is sustained and that data arising from these studies are securely managed. Recent experience suggests both are difficult to achieve. This is because management agencies and research bodies are periodically restructured, especially in recent years. This has often led to long‐term work being terminated. But there is anecdotal evidence that the data collected in at least some of these studies are not always lost. Instead, it can remain stored in the back rooms of agencies or in the personal files of former staff. Such data are clearly at risk; with time fewer people remain aware of the work or of the existence of data that were collected, thereby increasing the likelihood that the information will eventually disappear. This seems a waste. Securing funds for any long‐term ecological study is always likely to be difficult, and many of these previous long‐term studies are likely to be relevant to some of our present management problems. One approach to taking advantage of these earlier studies would be to ask scientific and professional associations to survey their older members to identify relevant previous investigations. But any re‐establishment of former studies will require the creation of new institutional arrangements, more robust institutional memories and sufficient funds that are able to sustain any resurrected investigations into the future.     

Species‐specific adaptations explain resilience of herbaceous understorey to increased precipitation variability in a Mediterranean oak woodland

To date, the implications of the predicted greater intra‐annual variability and extremes in precipitation on ecosystem functioning have received little attention. This study presents results on leaf‐level physiological responses of five species covering the functional groups grasses, forbs, and legumes in the understorey of a Mediterranean oak woodland, with increasing precipitation variability, without altering total annual precipitation inputs. Although extending the dry period between precipitation events from 3 to 6 weeks led to increased soil moisture deficit, overall treatment effects on photosynthetic performance were not observed in the studied species. This resilience to prolonged water stress was explained by different physiological and morphological strategies to withstand periods below the wilting point, that is, isohydric behavior in Agrostis, Rumex, and Tuberaria, leaf succulence in Rumex, and taproots in Tolpis. In addition, quick recovery upon irrigation events and species‐specific adaptations of water‐use efficiency with longer dry periods and larger precipitation events contributed to the observed resilience in productivity of the annual plant community. Although none of the species exhibited a change in cover with increasing precipitation variability, leaf physiology of the legume Ornithopus exhibited signs of sensitivity to moisture deficit, which may have implications for the agricultural practice of seeding legume‐rich mixtures in Mediterranean grassland‐type systems. This highlights the need for long‐term precipitation manipulation experiments to capture possible directional changes in species composition and seed bank development, which can subsequently affect ecosystem state and functioning.     

Vegetation productivity patterns at high northern latitudes: a multi‐sensor satellite data assessment

Satellite‐derived indices of photosynthetic activity are the primary data source used to study changes in global vegetation productivity over recent decades. Creating coherent, long‐term records of vegetation activity from legacy satellite data sets requires addressing many factors that introduce uncertainties into vegetation index time series. We compared long‐term changes in vegetation productivity at high northern latitudes (>50°N), estimated as trends in growing season NDVI derived from the most widely used global NDVI data sets. The comparison included the AVHRR‐based GIMMS‐NDVI version G (GIMMS_g) series, and its recent successor version 3g (GIMMS_3g), as well as the shorter NDVI records generated from the more modern sensors, SeaWiFS, SPOT‐VGT, and MODIS. The data sets from the latter two sensors were provided in a form that reduces the effects of surface reflectance associated with solar and view angles. Our analysis revealed large geographic areas, totaling 40% of the study area, where all data sets indicated similar changes in vegetation productivity over their common temporal record, as well as areas where data sets showed conflicting patterns. The newer, GIMMS_3g data set showed statistically significant (α = 0.05) increases in vegetation productivity (greening) in over 15% of the study area, not seen in its predecessor (GIMMS_g), whereas the reverse was rare (<3%). The latter has implications for earlier reports on changes in vegetation activity based on GIMMS_g, particularly in Eurasia where greening is especially pronounced in the GIMMS_3g data. Our findings highlight both critical uncertainties and areas of confidence in the assessment of ecosystem‐response to climate change using satellite‐derived indices of photosynthetic activity. Broader efforts are required to evaluate NDVI time series against field measurements of vegetation growth, primary productivity, recruitment, mortality, and other biological processes in order to better understand ecosystem responses to environmental change over large areas.     

Long‐term mTOR inhibitors administration evokes altered calcium homeostasis and platelet dysfunction in kidney transplant patients

The use of the mammal target of rapamycin (mTOR) inhibitors has been consolidated as the therapy of election for preventing graft rejection in kidney transplant patients, despite their immunosuppressive activity is less strong than anti‐calcineurin agents like tacrolimus and cyclosporine A. Furthermore, as mTOR is widely expressed, rapamycin (a macrolide antibiotic produced by Streptomyces hygroscopicus) is recommended in patients presenting neoplasia due to its antiproliferative actions. Hence, we have investigated whether rapamycin presents side effects in the physiology of other cell types different from leucocytes, such as platelets. Blood samples were drawn from healthy volunteers and kidney transplant patients long‐term medicated with rapamycin: sirolimus and everolimus. Platelets were either loaded with fura‐2 or directly stimulated, and immunoassayed or fixed with Laemmli's buffer to perform the subsequent analysis of platelet physiology. Our results indicate that rapamycin evokes a biphasic time‐dependent alteration in calcium homeostasis and function in platelets from kidney transplant patients under rapamycin regime, as demonstrated by the reduction in granule secretion observed and subsequent impairment of platelet aggregation in these patients compared with healthy volunteers. Platelet count was also reduced in these patients, thus 41% of patients presented thrombocytopenia. All together our results show that long‐term administration of rapamycin to kidney transplant patients evokes alteration in platelet function.     

Long‐term decline despite conservation efforts questions Eurasian Stone‐curlew population viability in intensive farmlands

Agricultural intensification over the past decades has led to a generalized decline in farmland biodiversity. Farmland birds are particularly exposed to rapid changes in habitat and reduced food resources or availability. Understanding how farmland specialists can be preserved and their populations enhanced are major challenges for this century. Based on a long‐term (19‐year) study of a Eurasian Stone‐curlew Burhinus oedicnemus population, we estimated the demographic parameters, including clutch size, egg volume, hatching success, survival rate and apparent population size. Demographic rates found for this French population were, on average, comparable to those found elsewhere in Europe. However, all demographic parameters showed negative trends, including a dramatic decline in the local population (26% decline over 14 years) and a 10% decline in adult survival rate over 11 years. Such a long‐term decline, despite on‐going conservation efforts, calls into question the overall sustainability of arable Stone‐curlew populations. We infer some of the possible causes of this decline, in particular food shortage, and discuss how this pattern could be reversed through conservation measures applicable at very large spatial scales.     

Improving inferences from short‐term ecological studies with Bayesian hierarchical modeling: white‐headed woodpeckers in managed forests

Pilot studies are often used to design short‐term research projects and long‐term ecological monitoring programs, but data are sometimes discarded when they do not match the eventual survey design. Bayesian hierarchical modeling provides a convenient framework for integrating multiple data sources while explicitly separating sample variation into observation and ecological state processes. Such an approach can better estimate state uncertainty and improve inferences from short‐term studies in dynamic systems. We used a dynamic multistate occupancy model to estimate the probabilities of occurrence and nesting for white‐headed woodpeckers Picoides albolarvatus in recent harvest units within managed forests of northern California, USA. Our objectives were to examine how occupancy states and state transitions were related to forest management practices, and how the probabilities changed over time. Using Gibbs variable selection, we made inferences using multiple model structures and generated model‐averaged estimates. Probabilities of white‐headed woodpecker occurrence and nesting were high in 2009 and 2010, and the probability that nesting persisted at a site was positively related to the snag density in harvest units. Prior‐year nesting resulted in higher probabilities of subsequent occurrence and nesting. We demonstrate the benefit of forest management practices that increase the density of retained snags in harvest units for providing white‐headed woodpecker nesting habitat. While including an additional year of data from our pilot study did not drastically alter management recommendations, it changed the interpretation of the mechanism behind the observed dynamics. Bayesian hierarchical modeling has the potential to maximize the utility of studies based on small sample sizes while fully accounting for measurement error and both estimation and model uncertainty, thereby improving the ability of observational data to inform conservation and management strategies.     

High‐resolution photo‐mosaic time‐series imagery for monitoring human use of an artificial reef

Successful marine management relies on understanding patterns of human use. However, obtaining data can be difficult and expensive given the widespread and variable nature of activities conducted. Remote camera systems are increasingly used to overcome cost limitations of conventional labour‐intensive methods. Still, most systems face trade‐offs between the spatial extent and resolution over which data are obtained, limiting their application. We trialed a novel methodology, CSIRO Ruggedized Autonomous Gigapixel System (CRAGS), for time series of high‐resolution photo‐mosaic (HRPM) imagery to estimate fine‐scale metrics of human activity at an artificial reef located 1.3 km from shore. We compared estimates obtained using the novel system to those produced with a web camera that concurrently monitored the site. We evaluated the effect of day type (weekday/weekend) and time of day on each of the systems and compared to estimates obtained from binocular observations. In general, both systems delivered similar estimates for the number of boats observed and to those obtained by binocular counts; these results were also unaffected by the type of day (weekend vs. weekday). CRAGS was able to determine additional information about the user type and party size that was not possible with the lower resolution webcam system. However, there was an effect of time of day as CRAGS suffered from poor image quality in early morning conditions as a result of fixed camera settings. Our field study provides proof of concept of use of this new cost‐effective monitoring tool for the remote collection of high‐resolution large‐extent data on patterns of human use at high temporal frequency.     

Geographically widespread honeybee‐gut symbiont subgroups show locally distinct antibiotic‐resistant patterns

How long‐term antibiotic treatment affects host bacterial associations is still largely unknown. The honeybee‐gut microbiota has a simple composition, so we used this gut community to investigate how long‐term antibiotic treatment affects host‐associated microbiota. We investigated the phylogenetic relatedness, genomic content (GC percentage, genome size, number of genes and CRISPR) and antibiotic‐resistant genes (ARG) for strains from two abundant members of the honeybee core gut microbiota (Gilliamella apicola and Snodgrassella alvi). Domesticated honeybees are subjected to geographically different management policies, so we used two research apiaries, representing different antibiotic treatment regimens in their apiculture: low antibiotic usage (Norway) and high antibiotic usage (Arizona, USA). We applied whole‐genome shotgun sequencing on 48 G. apicola and 22 S. alvi. We identified three predominating subgroups of G. apicola in honeybees from both Norway and Arizona. For G. apicola, genetic content substantially varied between subgroups and distance similarity calculations showed similarity discrepancy between subgroups. Functional differences between subgroups, such as pectin‐degrading enzymes (G. apicola), were also identified. In addition, we identified horizontal gene transfer (HGT) of transposon (Tn10)‐associated tetracycline resistance (Tet B) across the G. apicola subgroups in the Arizonan honeybees, using interspace polymorphisms in the Tet B determinant. Our results support that honeybee‐gut symbiont subgroups can resist long‐term antibiotic treatment and maintain functionality through acquisition of geographically distinct antibiotic‐resistant genes by HGT.     

A direction‐selective local‐thresholding method,DSLT, in combination with a dye‐based method for automated three‐dimensional segmentation of cells and airspaces in developing leaves

Quantifying the anatomical data acquired from three‐dimensional (3D) images has become increasingly important in recent years. Visualization and image segmentation are essential for acquiring accurate and detailed anatomical data from images; however, plant tissues such as leaves are difficult to image by confocal or multi‐photon laser scanning microscopy because their airspaces generate optical aberrations. To overcome this problem, we established a staining method based on Nile Red in silicone‐oil solution. Our staining method enables color differentiation between lipid bilayer membranes and airspaces, while minimizing any damage to leaf development. By repeated applications of our staining method we performed time‐lapse imaging of a leaf over 5 days. To counteract the drastic decline in signal‐to‐noise ratio at greater tissue depths, we also developed a local thresholding method (direction‐selective local thresholding, DSLT) and an automated iterative segmentation algorithm. The segmentation algorithm uses the DSLT to extract the anatomical structures. Using the proposed methods, we accurately segmented 3D images of intact leaves to single‐cell resolution, and measured the airspace volumes in intact leaves.     

Maternal predator‐exposure affects offspring size at birth but not telomere length in a live‐bearing fish

The perception of predation risk could affect prey phenotype both within and between generations (via parental effects). The response to predation risk could involve modifications in physiology, morphology, and behavior and can ultimately affect long‐term fitness. Among the possible modifications mediated by the exposure to predation risk, telomere length could be a proxy for investigating the response to predation risk both within and between generations, as telomeres can be significantly affected by environmental stress. Maternal exposure to the perception of predation risk can affect a variety of offspring traits but the effect on offspring telomere length has never been experimentally tested. Using a live‐bearing fish, the guppy (Poecilia reticulata), we tested if the perceived risk of predation could affect the telomere length of adult females directly and that of their offspring with a balanced experimental setup that allowed us to control for both maternal and paternal contribution. We exposed female guppies to the perception of predation risk during gestation using a combination of both visual and chemical cues and we then measured female telomere length after the exposure period. Maternal effects mediated by the exposure to predation risk were measured on offspring telomere length and body size at birth. Contrary to our predictions, we did not find a significant effect of predation‐exposure neither on female nor on offspring telomere length, but females exposed to predation risk produced smaller offspring at birth. We discuss the possible explanations for our findings and advocate for further research on telomere dynamics in ectotherms.     

Long‐term social structure of a resident community of Atlantic spotted dolphins,Stenella Frontalis,in the Bahamas 1991–2002

Long‐term social structure data on small delphinids is lacking for most species except the bottlenose dolphin. This study describes the long‐term social structure of one community of Atlantic spotted dolphins, Stenella frontalis, divided into three social clusters. Data from 12 yr were analyzed using SOCPROG 2.3. Coefficients of association (CoA) were calculated using the half‐weight index. The overall mean community CoA ranged from 0.09 to 0.12. Temporal analyses and mantel tests revealed significant differences between sex class associations due to high male‐male CoA (0.12–0.23) compared to female‐female and mixed sex CoA (0.08–0.10). Female associations were strongly influenced by reproductive status, calf care, and social familiarity, but not by age class. Male associations were strongly influenced by age, access to females, and alliance formation. Males showed two levels of alliance formation, long‐term first order pairs/trios (CoA 0.70–1.00) and shorter‐term second order alliances between two or more first order alliances (CoA 0.45–0.69), and a possible third level during interspecies interactions. Mating strategies, sex, and cluster formation shaped the social structure in this spotted dolphin community. Similar to many bottlenose dolphin studies, long‐term affiliations for spotted dolphins were correlated with age, sex, and reproductive status.     

Variation in parental rearing expenditure triggers short‐term physiological effects on offspring in a long‐lived seabird

Parental care in long‐lived bird species involves a trade‐off between the benefits of increasing the effort expended on current offspring and the costs that this represents for future reproductive output. Under regimes of high environmental variability, long‐lived seabirds can adjust their breeding effort to buffer the negative effects of this variability on their offspring. However, the potential impacts of variation in breeding effort on offspring physiology in the short term and on longer‐term survival are poorly understood. In this study, we manipulated brood age through a cross‐fostering experiment to assess whether increasing or decreasing parental reproductive expenditure led to costs in Blue‐footed Booby Sula nebouxii chicks. Specifically, we tested the consequences of altered parental reproductive expenditure on the offspring's physiological condition (plasma metabolites, heterophil to lymphocyte ratio (H/L) and body condition index (BCI)) and survival. Offspring from broods in which parental investment was experimentally increased showed a lower BCI and lower alkaline phosphatase levels and higher H/L ratios than controls. Conversely, offspring showed the opposite pattern when reproductive expenditure was experimentally decreased. We observed no effects of manipulation of parental investment on triglyceride levels or on survival rates. Although our findings suggest that Blue‐footed Booby parents have the ability to adjust their breeding effort according to the demands of their offspring, parental effort could influence the effect of hatching order by suppressing the aggressive tendency of the senior chick.     

A quadratic correlation between long‐term mean group size and group density in a cooperatively breeding passerine

Both mean group size (MGS) and mean group density (MGD) are critical indices to characterize a population of cooperatively breeding birds. When a population reaches its carrying capacity, both long‐term MGS and long‐term MGD will remain relatively stable. However, there has been little study of how these two variables relate. The Masked laughingthrush Garrulax perspicillatus is a cooperatively breeding bird living in fragmented habitats. During 2010 and 2012‐2016, we used song playback to observe and confirm the group sizes and territory ranges of the birds and the data of bird presence to determine habitat suitability. By grouping the nearest territories according to their geographical coordinates, we divided the whole study area into 12 subareas and the whole population into 12 subpopulations. Then, we calculated both MGS and MGD for different time durations for each subpopulation. Finally, using MGD as independent variable and MGS as the dependent variable, we explored the correlations between MGS and MGD by fitting quadratic functions and modeling quadratic regression. Both MGS and MGD were averaged for different time durations and were cross‐related. Our results show that the MGS for more than 2 years significantly correlated with MGD for more than 3 years in a reverse parabolic shape, differing from that of short‐term effects. Our findings suggest that long‐term MGD is a better predictor of long‐term habitat quality and that long‐term MGS is determined by long‐term habitat quality in Masked Laughingthrushes. Based on above findings, we can infer that: (1) Long‐term habitat quality determines the long‐term MGS, but it sets no prerequisite for the status and source of group members; (2) Long‐term MGS in certain populations is adapted to the corresponding level of long‐term habitat quality, it facilitates us to predict the helper effects on current or future survival or reproduction in different situations. These findings and inferences are both helpful for us to understand the evolution of cooperative breeding.     

Increased leaf mesophyll porosity following transient retinoblastoma‐related protein silencing is revealed by microcomputed tomography imaging and leads to a system‐level physiological response to the altered cell division pattern

The causal relationship between cell division and growth in plants is complex. Although altered expression of cell‐cycle genes frequently leads to altered organ growth, there are many examples where manipulation of the division machinery leads to a limited outcome at the level of organ form, despite changes in constituent cell size. One possibility, which has been under‐explored, is that altered division patterns resulting from manipulation of cell‐cycle gene expression alter the physiology of the organ, and that this has an effect on growth. We performed a series of experiments on retinoblastoma‐related protein (RBR), a well characterized regulator of the cell cycle, to investigate the outcome of altered cell division on leaf physiology. Our approach involved combination of high‐resolution microCT imaging and physiological analysis with a transient gene induction system, providing a powerful approach for the study of developmental physiology. Our investigation identifies a new role for RBR in mesophyll differentiation that affects tissue porosity and the distribution of air space within the leaf. The data demonstrate the importance of RBR in early leaf development and the extent to which physiology adapts to modified cellular architecture resulting from altered cell‐cycle gene expression.