Interannual variations of the fish assemblage in the transitional zone of the Three Gorges Reservoir: persistence and stability

The construction of dams may lead to dramatic changes in fish assemblages due to the loss of lotic habitat caused by impoundment, which have been well documented. However, knowledge of the temporal variation of fish assemblages in the transitional zone, which is an ecotone between lotic and lentic environments of the reservoir, is still very rare. In the present study, fishes in the transitional zone of the Three Gorges Reservoir were sampled from 1997 to 2002 and from 2006 to 2009 to investigate interannual variations of fish assemblages. The results showed that 9 families, composed of 77 species, were found in the transitional zone with Cyprinidae as the dominant group. By cluster analysis (CLUSTER) and non-metric multidimensional scaling analysis (MDS), assemblages were separated into two groups at a Bray-Curtis similarity value of 77.26%, representing the pre-impoundment period and post-impoundment period. Following analysis of similarity percentages of species contributions (SIMPER), shifts in abundances of Coreius guichenoti, Rhinogobio cylindricus and Coreius heterodon, etc. contributed most to the difference between the two groups. Surprisingly, contrasting to the drastic changes in lacustrine region, the fish assemblage in the transitional zone appeared to be relatively stable, since the ten core species caught were consistently recorded every year, and no significant species replacement occurred during our study period. Besides, the moderate index of persistence indicated persistence of the fish assemblage as well, in spite of the shift of some species. Based on the results of ordination and time-lag analysis, the fish assemblage in the transitional zone showed no directional change. We conclude that fish assemblage in the transitional zone of the Three Gorges Reservoir was stable across the surveyed years. Based on our results, we propose that maintenance of dynamic transitional zones in reservoirs will be useful for the preservation of fishes, particularly for the endemic species inhabiting the upper Yangtze.     

Isolation and characterization of polymorphic microsatellites in a Yangtze River fish,brass gudgeon (Coreius heterodon Bleeker)

The brass gudgeon (Coreius heterodon) is a fish of economic importance in the Yangtze River. From a (GATA)_n‐enriched genomic library, 25 microsatellites were developed by employing the fast isolation by AFLP of sequences containing repeats (FIASCO) protocol. Nine loci exhibited polymorphism with two to 12 alleles (mean 3.9 alleles/locus) in a test population, and observed heterozygosity ranged from 0.1111 to 0.9630 (mean 0.4426). Three of the nine loci showed polymorphism in a congeneric species, the largemouth bronze gudgeon Coreius guichenoti. These loci should provide sufficient level of genetic diversity to evaluate the fine‐scale population structure of C. heterodon.     

三峡水库175 m试验性蓄水期库区及其上游江段鱼类群落结构时空分布格局

根据2010—2012年在三峡水库及其上游江段5个江段的商业性渔获物调查结果,对该区域鱼类群落结构的时空分布格局进行了分析。调查中共收集到鱼类87种,隶属于8目18科63属。沿坝前江段溯河而上至库尾以上流水江段,鱼类种类数逐渐增加。采用聚类分析(CA)和非度量多维标度(NMDS)方法对三峡水库175 m试验性蓄水期间各江段的鱼类种类组成进行分析,发现这5个调查江段的鱼类种类组成可以分为两个类群:类群Ⅰ包括秭归、巫山、云阳3个库区的江段,其鱼类种类组成在各年间的差异程度较大;而类群Ⅱ包括库尾的涪陵江段以及上游的江津江段,其鱼类种类组成在各年间差异程度较小。采用CA和NMDS方法对鱼类群落结构时空分布格局的分析结果表明,5个调查江段的鱼类群落结构在各年间可以分为不同类群;云阳与涪陵江段的鱼类群落结构的相似性逐年增加,而与秭归、巫山江段的相似性逐年减少;涪陵江段与江津江段的鱼类群落结构相似性也呈逐年减少趋势。总体而言,175m试验性蓄水对库中和库尾江段的鱼类群落结构的影响较大,但对库首以及库尾以上流水江段的影响均较小。     

昆承湖优势种鱼类时空-营养生态位

为了解昆承湖优势种鱼类资源利用情况,首先利用生态位方法计算了时间、空间及营养三个资源维度的生态位宽度及重叠值,然后根据时空-营养生态位宽度值将优势种鱼类划分为广位种、中位种和窄位种,最后讨论了生态位宽度及重叠的可能原因。结果显示：刀鲚Coilia nasus、蒙古鲌Chanodichthys mongolicus、似鱎Toxabramis swinhonis、似鳊Pseudobrama simoni、鳙Hypophthalmichthys nobilis、鲢Hypophthalmichthys molitrix、花鱼骨Hemibarbus maculatus、似刺鳊鮈Paracanthobrama guichenoti、大鳍鱊Acheilognathus macropterus和鲫Carassius auratus为优势种。在时间维度：鲢的生态位宽度最大,似鳊的最小;生态位重叠具有显著意义的有24对,占总的53.33%。在空间维度,似刺鳊鮈最大,鲢最小;生态位重叠具有显著意义的有36对,占总的80%。在营养维度,最大的为鲫,最小的为花鱼骨;生态位重叠具有显著意义的有8对,占17.78%...     

Polymorphic microsatellites in largemouth bronze gudgeon (Coreius guichenoti) developed from repeat‐enriched libraries and cross‐species amplifications

Largemouth bronze gudgeon (Coreius guichenoti) is a medium‐sized fish endemic from the upper Yangtze River of China and its survival is threatened by the construction of the Three Gorges Dam. This study reports 20 new polymorphic microsatellites from a repeat‐enriched genomic library with a mean number allele of 5.2, and observed and expected heterozygosities ranging from 0.035 to 1, and from 0.13 to 0.917, respectively. In a cross‐species amplification test, nine of the 37 tested loci were found to be also polymorphic in a congeneric species, brass gudgeon (C. heterodon). In addition, other four loci from common carp (Cyprinus carpio) were also polymorphic in C. guichenoti. Out of these 24 polymorphic microsatellites, only three loci significantly deviated from Hardy–Weinberg equilibrium in the sampled population (P < 0.0025), and all pairwise tests for linkage disequilibrium among loci were nonsignificant after applying sequential Bonferroni correction (P > 0.0026). These novel microsatellites provide sufficient levels of polymorphism for studies on population genetics and conservation in C. guichenoti and its related species.     

Length‐weight relationships of eleven fish species from the middle reaches of Jinsha River,southwest China

Length‐weight relationships (LWRs) were determined for eleven endemic fish species [Coreius guichenoti (Sauvage & Dabry de Thiersant, 1874), Glyptothorax sinensis (Regan, 1908), Leptobotia elongata (Bleeker, 1870), Leptobotia taeniops (Sauvage, 1878), Pseudobagrus crassilabris (Günther, 1864), Rhinogobio ventralis (Sauvage & Dabry de Thiersant, 1874), Saurogobio dabryi (Bleeker, 1871), Schizothorax chongi (Fang, 1936), Schizothorax kozlovi (Nikolskii, 1903), Schizothorax prenanti (Tchang, 1930) and Schizothorax wangchiachii (Fang, 1936)] from the middle reaches of the Jinsha River in southwest China. Samples were obtained between May 2004 and July 2013 using various types of fishing gear and electroshock fishing techniques. For each species, the sample size, length range, weight range, LWR, 95% confidence intervals of a and b, and coefficient of correlation were determined. Prior to this study, the LWRs for four species (P. crassilabris, S. chongi, S. kozlovi and S. prenanti) were unknown.     

Phylogenetic relationships of the Chinese cyprinid genus <Emphasis Type="Italic">Rhinogobio </Emphasis>Bleeker (Teleostei: Cyprinidae) based on sequences of the mitochondrial DNA control region,with comments on character adaptations

Rhinogobio is a cyprinid genus restricted to the river drainages of China. Sequences of the mitochondrial DNA control region were determined for four Rhinogobio species and one outgroup species, Coreius heterodon, to investigate the phylogenetic relationships within the genus. The control region of the Rhinogobiospecies ranges from 922 to 930 base pairs and comprises 930 base pairs in Coreius. Our phylogenetic analysis indicates two distinct lineages in the genus Rhinogobio. The first includes only R R. ventralis. In the second lineage there are three species, two closely related species R.cylindricus andR.hunanensis, and their sister speciesR. typus. An analysis of character adaptations suggests an evolutionary trend in this genus towards a relatively lower body and caudal peduncle depth, a shorter dorsal fin, and a more anterior anus. In addition, there is a trend towards shorter barbels and relatively larger eyes. Some or all of these traits may be associated with a habitat shift from fast-flowing turbid rivers to slower-flowing clear river habitats.     

Evidence of Niche Partitioning under Ontogenetic Influences among Three Morphologically Similar Siluriformes in Small Subtropical Streams

Ontogenetic influences in patterns of niche breadth and feeding overlap were investigated in three species of Siluriformes (Heptapterus sp., Rhamdia quelen and Trichomycterus poikilos) aiming at understanding the species coexistence. Samplings were conducted bimonthly by electrofishing technique from June/2012 to June/2013 in ten streams of the northwestern state of Rio Grande do Sul, Brazil. The stomach contents of 1,948 individuals were analyzed by volumetric method, with 59 food items identified. In general Heptapterus sp. consumed a high proportion of Aegla sp., terrestrial plant remains and Megaloptera; R. quelen consumed fish, and Oligochaeta, followed by Aegla sp.; while the diet of T. poikilos was based on Simuliidae, Ephemeroptera and Trichoptera. Specie segregation was observed in the NMDS. Through PERMANOVA analysis feeding differences among species, and between a combination of species plus size classes were observed. IndVal showed which items were indicators of these differences. Niche breadth values were high for all species. The niche breadth values were low only for the larger size of R. quelen and Heptapterus sp. while T. poikilos values were more similar. Overall the species were a low feeding overlap values. The higher frequency of high feeding overlap was observed for interaction between Heptapterus sp. and T. poikilos. The null model confirmed the niche partitioning between the species. The higher frequency of high and intermediate feeding overlap values were reported to smaller size classes. The null model showed resource sharing between the species/size class. Therefore, overall species showed a resource partitioning because of the use of occasional items. However, these species share resources mainly in the early ontogenetic stages until the emphasized change of morphological characteristics leading to trophic niche expansion and the apparent segregation observed.     

Evolutionary dynamics of ecological niche in three Rhinogobio fishes from the upper Yangtze River inferred from morphological traits

In the past decades, it has been debated whether ecological niche should be conserved among closely related species (phylogenetic niche conservatism, PNC) or largely divergent (traditional ecological niche theory and ecological speciation) and whether niche specialist and generalist might remain in equilibrium or niche generalist could not appear. In this study, we employed morphological traits to describe ecological niche and test whether different niche dimensions exhibit disparate evolutionary patterns. We conducted our analysis on three Rhinogobio fish species (R. typus, R. cylindricus, and R. ventralis) from the upper Yangtze River, China. Among the 32 measured morphological traits except body length, PCA extracted the first four principal components with their loading scores >1.000. To find the PNC among species, Mantel tests were conducted with the Euclidean distances calculated from the four principal components (representing different niche dimensions) against the pairwise distances calculated from mitochondrial cytochrome b sequence variations. The results showed that the second and the third niche dimension, both related to swimming ability and behavior, exhibited phylogenetic conservatism. Further comparison on niche breadth among these three species revealed that the fourth dimension of R. typus showed the greatest width, indicating that this dimension exhibited niche generalism. In conclusion, our results suggested that different niche dimensions could show different evolutionary dynamic patterns: they may exhibit PNC or not, and some dimensions may evolve generalism.     

Comparative Feeding Ecology of Sympatric <Emphasis Type="Italic">Microcebus berthae and M. murinus</Emphasis>

Most Malagasy primate communities harbor a diverse assemblage of omnivorous species. The mechanisms allowing the coexistence of closely related species are poorly understood, partly because only preliminary data on the feeding ecology of most species are available. We provide an exemplary feeding ecology data set to illuminate coexistence mechanisms between sympatric gray and Madame Berthe’s mouse lemurs (Microcebus murinus, M. berthae). We studied their feeding ecology in Kirindy Forest/CFPF, a highly seasonal dry deciduous forest in western Madagascar. Between August 2002 and December 2007, we regularly (re-)captured, marked, and radiotracked females of both species. A combination of direct behavioral observations and fecal analyses revealed that both Microcebus species used fruit, arthropods, gum, insect secretions, and small vertebrates as food sources. However, Microcebus berthae and M. murinus differed in both composition and seasonal variation of their diets. Whereas the diet of Microcebus murinus varied seasonally and was generally more diverse, M. berthae relied mainly on insect secretions supplemented by animal matter. The differences were also reflected in a very narrow feeding niche of Microcebus berthae and a comparatively broad feeding niche of M. murinus. Resource use patterns of Madame Berthe’s and more so of opportunistic gray mouse lemurs broadly followed resource availability within the strongly seasonal dry forest. Feeding niche overlap between the 2 sympatric species was high, indicating that food resource usage patterns did not reflect niche partitioning, but can instead be explained by constraints due to food availability.     

Morphological and trophic specialization in a subterranean amphipod assemblage

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Effects of species co‐occurrence on the trophic‐niche breadth of characids in Amazon forest streams

This study assessed the width of the trophic niche of four characid species (Bryconops giacopinii, Bryconops inpai, Hyphessobrycon aff. melazonatus and Iguanodectes geisleri) found under different co‐occurrence circumstances in Amazonian upland streams. The study was conducted during the rainy season of 2011 at eight sites of two micro‐basins of the Ducke Reserve, Manaus, Amazonas, Brazil. The four species were studied in the following circumstances: only one of the species occurring in the stream; two species co‐occurring; three species co‐occurring. The relative volume of the food items in the fish stomachs was used to calculate Hurlbert's trophic‐niche breadth for the individuals of each species in the different co‐occurrence circumstances. Hyphessobrycon aff. melazonatus changed their diet when occurring in syntopy with other characid species of similar feeding habits, as shown by a significant narrowing of its trophic niche. The opportunistic habits and great feeding flexibility of these characid species make the partitioning of food resources possible and act as an important ecological mechanism that facilitates the coexistence of different species, possibly by attenuating the effects of direct competition for food. In addition, the low carrying capacity of these upland forest streams may be an important environmental factor influencing the results of this study.     

Is resource partitioning the key? The role of intra‐interspecific variation in coexistence among five small endemic fish species (Characidae) in subtropical rivers

This study focused on intra and interspecific variations in the diet of small species in the Pelotas River, upper Uruguay River ecoregion. We tested the hypothesis that five small characids coexist via resource partitioning. Samplings were performed quarterly between August 2013 and May 2014 at 14 sites in the Pelotas River basin, using gillnets of different mesh sizes, seines, cast nets and electrofishing. In this study, the contents of 1,253 stomachs were analysed from Astyanax dissensus, A. paris, A. saguazu, A. xiru and Bryconamericus patriciae. The main food resources consumed were aquatic insects, leaves, seeds and detritus. There were significant seasonal intra and interspecific variations in the use of food resources by the five species. Permutational analysis of multivariate dispersions results indicated significant differences in individual intraspecific variability between the sampled periods, with the highest values found in November and February because of an increase in allochthonous resources (leaves and seeds). Besides this, significant differences in the proportions of consumption of allochthonous and autochthonous were observed. The trophic niche breadth was significantly different among the species, such that in August, the species had narrower niche breadths. In the other periods, the highest niche breadth values were due to an increase in the consumption of allochthonous items. Diet overlap was low (< 0.4) between 62% of the species pairs. The small characid species showed pronounced changes in resource use and intra and interspecific variations indicating resource partitioning. These factors appear to be essential in species interactions and for coexistence.     

Micro-habitat use within a guild of newt larvae (Trituridae) in an Alpine lake

Population and ecological parameters such as numbers of larvae, microhabitat use, niche breadth and niche overlap of three species of syntopic larval newts (Alpine newt Triturus alpestris, Italian crested newt T. carnifex, and common newt T. vulgaris) were studied for two years in a small pond at 1160 m a.s.l. in NE Slovenia. Differences in microhabitat partitioning among larval newts were small. The largest niche breadth was estimated for larval T. alpestris, and the narrowest estimate was for larval T. carnifex in both years. Ecological differences seem to be very small and quite variable among sites and years. It appears that the developmental stage and size of newt larvae are more important in explaining resource partitioning than the characteristics of each species. Because of the absence of potential invertebrate predators and adult newts in the second half of the breeding season, the injuries could only be caused by intra-and interspecific predation attempts.     

Bridge under troubled water: Turbulence and niche partitioning in fish foraging

The coexistence of competing species relies on niche partitioning. Competitive exclusion is likely inevitable at high niche overlap, but such divide between competitors may be bridged if environmental circumstances displace competitor niches to enhance partitioning. Foraging‐niche dimension can be influenced by environmental characteristics, and if competitors react differently to such conditions, coexistence can be facilitated. We here experimentally approach the partitioning effects of environmental conditions by evaluating the influence of water turbulence on foraging‐niche responses in two competing fish species, Eurasian perch Perca fluviatilis and roach Rutilus rutilus, selecting from planktonic and benthic prey. In the absence of turbulence, both fish species showed high selectivity for benthic chironomid larvae. R. rutilus fed almost exclusively on zoobenthos, whereas P. fluviatilis complemented the benthic diet with zooplankton (mainly copepods). In turbulent water, on the other hand, the foraging‐niche widths of both R. rutilus and P. fluviatilis increased, while their diet overlap simultaneously decreased, caused by 20% of the R. rutilus individuals turning to planktonic (mainly bosminids) prey, and by P. fluviatilis increasing foraging on littoral/benthic food sources. We show that moderate physical disturbance of environments, such as turbulence, can enhance niche partitioning and thereby coexistence of competing foragers. Turbulence affects prey but not fish swimming capacities, with consequences for prey‐specific distributions and encounter rates with fish of different foraging strategies (pause‐travel P. fluviatilis and cruise R. rutilus). Water turbulence and prey community structure should hereby affect competitive interaction strengths among fish species, with consequences for coexistence probability as well as community and system compositions.     

Dietary shifts in a stressed fish assemblage: Consequences of a bivalve invasion in the San Francisco Estuary

We compared dietary patterns within a temperate estuarine fish assemblage (Suisun Marsh, CA, U.S.A.) during a period of high mysid shrimp abundance and after a major decline in mysid abundance caused by the invasion of the overbite clam Potamocorbula amurensis. Prior to the invasion, high dietary overlap, high stomach fullness, and low niche breadth occurred among the fishes in spring when mysid populations were high. Dietary overlaps decreased and niche breadth increased for all species but the endemic splittail Pogonichthys macrolepidotus in fall when mysid populations were low. Eight native species exhibited lower overall collective overlaps and fuller stomachs than five alien species, suggesting more efficient resource partitioning. After mysid abundance declined, only alien striped bass Morone saxatilis preyed upon mysids in greater than trace amounts. An alien mysid became an important prey for small striped bass, but striped bass also switched to piscivory at a smaller size than when mysids were abundant. Eight of 13 species exhibited significant declines in abundance during the study period, which were concordant with the original importance of mysids in their diets. Our results suggest that altered lower food web dynamics in the San Francisco Estuary caused by the invasion of the overbite clam changed fish diets and have contributed to declines in fish abundance.     

Food partitioning among carnivores within feeding guild structure of fishes inhabiting a mudflat ecosystem of Indian Sundarbans

The present study was aimed to determine dietary composition and feeding guild structure of the fishes inhabiting mudflat habitat of Indian Sundarbans. In addition, partitioning of food resources by the fish species belonging to the carnivorous feeding guild was also performed to understand the survival strategies of fish in a mudflat estuarine habitat. Seventeen prey categories were isolated from the stomachs of 31 studied fish species. Overall, five feeding guilds (viz. plankti-benthivore: 12 species, herbivore: one species, detritivore: three species, omnivore: one species and carnivore: 14 species) were identified on the basis of the prey abundance within their stomachs, considering 64 % Bray–Curtis similarity. Among the carnivorous, maximum trophic richness was obtained for Uroconger lepturus followed by Ophichthus apicalis. Teleost and decapods were the main animal prey items preferred by majority of the carnivorous fishes. However, O. apicalis and Terapon jarbua showed their preference toward maximum number of prey categories among carnivores, which was also ratified by the high values for standardized niche breadth presented by them. The maximum degree of interspecific dietary overlap was found between Uropterygius marmoratus and Pseudapocryptes elongatus as both of them were recognized as cranci-piscivore. The lowest was observed between Hyporhamphus limbatus and Coilia neglecta. As food resources are not limiting in the mudflats of Indian Sundarbans, the general patterns of resource partitioning and niche differentiation in resident ecological communities will improve the understanding of the mechanisms underlying species coexistence and community structure.     

Prey diversity as a driver of resource partitioning between river‐dwelling fish species

Although food resource partitioning among sympatric species has often been explored in riverine systems, the potential influence of prey diversity on resource partitioning is little known. Using empirical data, we modeled food resource partitioning (assessed as dietary overlap) of coexisting juvenile Atlantic salmon (Salmo salar) and alpine bullhead (Cottus poecilopus). Explanatory variables incorporated into the model were fish abundance, benthic prey diversity and abundance, and several dietary metrics to give a total of seventeen potential explanatory variables. First, a forward stepwise procedure based on the Akaike information criterion was used to select explanatory variables with significant effects on food resource partitioning. Then, linear mixed‐effect models were constructed using the selected explanatory variables and with sampling site as a random factor. Food resource partitioning between salmon and bullhead increased significantly with increasing prey diversity, and the variation in food resource partitioning was best described by the model that included prey diversity as the only explanatory variable. This study provides empirical support for the notion that prey diversity is a key driver of resource partitioning among competing species.     

Importance of multi-dimensional analyses of resource partitioning in highly mobile species assemblages

Resource partitioning is an essential mechanism enabling species coexistence. The resources that are used by an animal are linked to its morphology and ecology. Therefore, similar species should use similar resources. The ecological niche of an individual summarizes all used resources and is therefore composed of several dimensions. Many methods are established to study different dimensions of an animal's niche. The aim of this study was to demonstrate that a combination of suitable methods is needed to study spatial and dietary resource partitioning of sympatric species in detail. We hypothesized that, while each individual method might identify differences between species, the combined results of several methods will lead to a more complete picture of spatial and dietary resource partitioning. As model organisms we chose the sympatric insectivorous bat species Myotis bechsteinii, M. nattereri, and P. auritus. We examined horizontal habitat use by telemetry, vertical habitat use by measuring δ¹³C, trophic position by measuring δ¹⁵N in wing membrane, and diet composition by molecular fecal analysis. Our results show that each method is able to provide information about spatial/dietary resource partitioning. However, considering further dimensions by combining several methods allows a more comprehensive assessment of dietary and spatial resource partitioning in bats.     

Is food resource partitioning responsible for deviation of echolocation call frequencies from allometry in <Emphasis Type="Italic">Rhinolophus macrotis</Emphasis>?

There is an apparent allometric relationship between peak frequency of echolocation and body size in rhinophilids. However, some rhinolophids deviate from this rule. To date this variation has been explained as a result of partitioning of communication channels. An alternative hypothesis that food resource partitioning results in this divergence in expected frequencies was tested by comparing prey selection between Rhinolophus macrotis Blyth, 1844 and Rhinolophus lepidus Blyth, 1844 in Yunnan Province, China. These two sympatric species are morphologically similar but acoustically divergent: R. macrotis has an echolocation frequency significantly lower than that predicted by the allometric relationship, whereas that of R. lepidus agreed with expectations. Prey selection experiments, conducted in a flight tent, indicated that the dominant prey taxa of R. macrotis were Lasiocampidae, Arctiidae and Noctuidae, whilst that of R. lepidus were Arctiidae, Noctuidae and Ichneumonidae. R. macrotis ate more earless moths and fewer eared moths than R. lepidus, and R. macrotis fed on larger prey in general and captured a wider size range than that captured by R. lepidus. These results confirmed the existence of finely tuned trophic niche differentiation and suggested that food resource partitioning is one of the factors leading to lower peak frequency of calls in R. macrotis.