Evolution and mechanisms of plant tolerance to flooding stress

Background

In recognition of the 200th anniversary of Charles Darwin''s birth, this short article on flooding stress acknowledges not only Darwin''s great contribution to the concept of evolution but also to the study of plant physiology. In modern biology, Darwin-inspired reductionist physiology continues to shed light on mechanisms that confer competitive advantage in many varied and challenging environments, including those where flooding is prevalent.

Scope

Mild flooding is experienced by most land plants but as its severity increases, fewer species are able to grow and survive. At the extreme, a highly exclusive aquatic lifestyle appears to have evolved numerous times over the past 120 million years. Although only 1–2% of angiosperms are aquatics, some of their adaptive characteristics are also seen in those adopting an amphibious lifestyle where flooding is less frequent. Lowland rice, the staple cereal for much of tropical Asia falls into this category. But, even amongst dry-land dwellers, or certain of their sub-populations, modest tolerance to occasional flooding is to be found, for example in wheat. The collection of papers summarized in this article describes advances to the understanding of mechanisms that explain flooding tolerance in aquatic, amphibious and dry-land plants. Work to develop more tolerant crops or manage flood-prone environments more effectively is also included. The experimental approaches range from molecular analyses, through biochemistry and metabolomics to whole-plant physiology, plant breeding and ecology.Key words: Abiotic stress, adaptation, anoxia, Charles Darwin, environmental stress, evolution, flooding, hypoxia, rice, submergence, wetlands     

Physiological and Molecular Basis of Susceptibility and Tolerance of Rice Plants to Complete Submergence

Rice plants are much damaged by several days of total submergence.The effect can be a serious problem for rice farmers in therainfed lowlands of Asia, and runs contrary to a widespreadbelief amongst plant biologists that rice is highly tolerantof submergence. This article assesses the characteristics ofthe underwater environment that may damage rice plants, examinesvarious physiological mechanisms of injury, and reviews recentprogress achieved using linkage mapping to locate quantitativetraits loci (QTL) for tolerance inherited from a submergence-tolerantcultivar FR13A. Progress towards identifying the gene(s) involvedthrough physical mapping of a dominant tolerance locus on chromosome9 is also summarized. Available physiological evidence pointsaway from responses to oxygen shortage as being inextricablyinvolved in submergence injury. An imbalance between productionand consumption of assimilates is seen as being especially harmful,and is exacerbated by strongly accelerated leaf extension andleaf senescence that are ethylene-mediated and largely absentfrom FR13A and related cultivars. DNA markers for a major QTLfor tolerance are shown to be potentially useful in breedingprogrammes designed to improve submergence tolerance.     

三峡水库消落区植被在差异性水淹环境中的分布格局

人工水库修建引发的差异性水文节律是决定消落区植被群落格局的主要因素,高强度水淹环境中水淹胁迫是影响植被的重要因子而低强度水淹环境中物种竞争是影响植被的重要因子。为了探究差异性水淹环境中三峡水库消落区植物的水淹耐受能力及光资源竞争能力(植物株高)对植被群落分布格局的影响,对三峡水库典型消落区不同水淹强度下生长的植被进行了研究,结果表明:(1)典型消落区调查共发现有植物41种,其中高耐淹低竞争能力型植物4种,其生物量在所有物种生物量中的占比达70.99%,低耐淹高竞争能力型植物23种,其生物量占比为28.02%,低耐淹低竞争能力型植物14种,生物量占比不足1%,消落区内无高耐淹高竞争能力型植物物种分布;(2)高耐淹低竞争能力型植物在水淹强度大的消落区区域占优,低耐淹高竞争能力型植物在植物物种竞争压力大的消落区区域占据主导,低耐淹低竞争能力型植物在消落区中仅有零星分布;(3)消落区植被生物量格局随着高程增加呈现出先增加后减少的趋势。研究差异性水淹环境对三峡水库消落区植被分布的影响,可以为深入理解消落区植被分布格局的形成机制和大型水库消落区植被恢复与重建提供理论依据。     

Ethylene-promoted elongation: an adaptation to submergence stress

BACKGROUND: A sizeable minority of taxa is successful in areas prone to submergence. Many such plants elongate with increased vigour when underwater. This helps to restore contact with the aerial environment by shortening the duration of inundation. Poorly adapted species are usually incapable of this underwater escape. SCOPE: Evidence implicating ethylene as the principal factor initiating fast underwater elongation by leaves or stems is evaluated comprehensively along with its interactions with other hormones and gases. These interactions make up a sequence of events that link the perception of submergence to a prompt acceleration of extension. The review encompasses whole plant physiology, cell biology and molecular genetics. It includes assessments of how submergence threatens plant life and of the extent to which the submergence escape demonstrably improves the likelihood of survival. CONCLUSIONS: Experimental testing over many years establishes ethylene-promoted underwater extension as one of the most convincing examples of hormone-mediated stress adaptation by plants. The research has utilized a wide range of species that includes numerous angiosperms, a fern and a liverwort. It has also benefited from detailed physiological and molecular studies of underwater elongation by rice (Oryza sativa) and the marsh dock (Rumex palustris). Despite complexities and interactions, the work reveals that the signal transduction pathway is initiated by the simple expediency of physical entrapment of ethylene within growing cells by a covering of water.     

Response and adaptation by plants to flooding stress

Stress on plants imposed by flooding of the soil and deeper submergence constitutes one of the major abiotic constraints on growth, species' distribution and agricultural productivity. Flooding stress is also a strong driver of adaptive evolution. This has resulted in a wide range of biochemical, molecular and morphological adaptations that sanction growth and reproductive success under episodic or permanently flooded conditions that are highly damaging to the majority of plant species. However, even seemingly poorly adapted species possess some short-term resilience that is important for overall success of these plants in various habitats. The papers contained in this Special Issue address these topics and emphasize molecular, biochemical and developmental processes that impact on flooding tolerance. Most of the articles are based on lectures given to the 8th Conference of the International Society for Plant Anaerobiosis (ISPA), held at the University of Western Australia, Perth, 20-24 September, 2004. Reviews and research papers are presented from the leading laboratories currently working on plant responses to flooding stress.     

Molecular Genetics of Submergence Tolerance in Rice: QTL Analysis of Key Traits

Flash flooding of young rice plants is a common problem forrice farmers in south and south-east Asia. It severely reducesgrain yield and increases the unpredictability of cropping.The inheritance and expression of traits associated with submergencestress tolerance at the seedling stage are physiologically andgenetically complex. We exploited naturally occurring differencesbetween certain rice lines in their tolerance to submergenceand used quantitative trait loci (QTL) mapping to improve understandingof the genetic and physiological basis of submergence tolerance.Three rice populations, each derived from a single cross betweentwo cultivars differing in their response to submergence, wereused to identify QTL associated with plant survival and variouslinked traits. These included total shoot elongation under water,the extent of stimulation of shoot elongation caused by submergence,a visual submergence tolerance score, and leaf senescence underdifferent field conditions, locations and years. Several majorQTL determining plant survival, plant height, stimulation ofshoot elongation, visual tolerance score and leaf senescenceeach mapped to the same locus on chromosome 9. These QTL weredetected consistently in experiments across all years and inthe genetic backgrounds of all three mapping populations. SecondaryQTL influencing tolerance were also identified and located onchromosomes 1, 2, 5, 7, 10 and 11. These QTL were specific toparticular traits, environments, or genetic backgrounds. Allidentified QTL contributed to increased submergence tolerancethrough their effects on decreased underwater shoot elongationor increased maintenance of chlorophyll levels, or on both.These findings establish the foundations of a marker-assistedscheme for introducing submergence tolerance into agriculturallydesirable cultivars of rice.     

Submergence tolerance of rice – A new glasshouse method for the experimental submergence of plants

A new method is described for evaluation of submergence tolerance of rice ( Oryza sativa L.) plants. Responses of a range of cultivars corresponded with known differences in field performance. The method 1) allows fast and effective determination of submergence tolerance, 2) allows screening of many plants in a small glasshouse area, 3) provides for recovery of superior plants for seed collection, 4) allows manipulation of many environmental variables to mimic the natural submergence environment, and 5) uses simple, inexpensive, readily available equipment. Physiological studies performed with this method gave results similar to those obtained from field studies and showed that submergence tolerance increased in older plants; it decreased with increasing depth, increasing temperature and with high or low light levels. The system is ideal for the rapid evaluation of rice germplasm under controlled conditions and physiological studies on the mechanism of rice submergence tolerance.     

长期水淹条件下香根草(Vetiveria zizanioides)、菖蒲(Acorus calamus)和空心莲子草(Alternanthera philoxeroides)的存活及生长响应

人工构建三峡库区消落区植被是控制消落区水土流失、保护消落区生态环境的重要措施,选择能够耐受长时间完全水淹的植物物种是该措施实施的关键.为了验证香根草、菖蒲、空心莲子草能否用于消落区植被的构建,实验模拟消落区的长期完全水淹条件,设置30d、60d、90d、120d、150d和180d等6个完全水淹时间水平,研究了3种植物在完全水淹条件下生长、生物量积累及存活状况.结果发现:(1)3种植物在经受长时间的完全水淹后有较高的存活率,180d全淹处理后,香根草、菖蒲和空心莲子草的存活率分别为87.5%、100%和50%.(2)这3种植物有不同的水下生长能力.全淹条件下,香根草生长缓慢,几乎没有产生新的叶片,总叶长也没有显著变化;菖蒲能够持续产生较对照植株更为细长的叶片,空心莲子草只在水淹初期(30d内)能够快速伸长地上部分的枝条,并迅速产生新叶片,但随水淹时间的延长,总枝条长及总叶片数没有再显著增加.(3)与对照植株相比,全淹处理抑制了3种植物总生物量的增加,但对3种植物的地上、地下部分生物量抑制程度不同.全淹条件下,香根草的地上部分和地下部分生物量与水淹0d水平(水淹处理开始前一天,下同)相比无显著变化,根冠比高于对照植株;菖蒲的地上部分生物量随水淹时间延长而降低,但却高于对照植株,地下部分生物量始终低于水淹0d水平,根冠比低于对照植株;空心莲子草的地上部分生物量与水淹0d水平相比无显著差异,但地下部分生物量与水淹0d水平相比大幅降低,根冠比低于对照植株.结果表明,这3种植物都有很强的水淹耐受能力,可应用于三峡库区消落区植被的构建.同时,发现植物对长期完全水淹的耐受能力很大程度上与植株在水下的生长情况及植株的营养储备水平相关,剧烈的水下生长会消耗大量的营养储备,进而造成植株存活率降低.植株在全淹条件下有限的生长能力及丰富的营养储备可能是耐淹物种的重要特征.     

The beneficial effect of reduced elongation growth on submergence tolerance of rice

Adverse effects of elongation growth on tolerance to completesubmergence for up to 14 d were evaluated in rice seedlingsof cultivars which differed in submergence tolerance. Thereis a good negative correlation between per cent survival andelongation growth of genotypes during complete submergence (r= – 0.81). When elongation growth underwater is minimizedby application of a gibberellin biosynthesis inhibitor, percent survival increases by as much as 50 times for one cultivar.These effects are likely related to elongation growth since(i) addition of gibberellin had the opposite effect by reducingsurvival, and (ii) when the elongation inhibitor and gibberellinwere added together, there was no effect on elongation growthand the per cent survival did not change. A GA-deficient mutantof rice which had little elongation ability during submergenceshowed a high level of submergence tolerance when plants weresubmerged at equal initial dry weights and carbohydrate levelsrelative to a submergence-tolerant cultivar. These results areconsistent with the hypothesis that elongation growth competeswith maintenance processes for energy and hence reduces survivalduring submergence. The impact of these findings is that inenvironments where elongation ability is not required, thereis a potential to increase submergence tolerance of agriculturallyimportant cultivars by selecting for least elongation, at leastduring periods of complete submergence. Furthermore, this trade-offbetween stimulated elongation growth and submergence tolerancewill have important ecological consequences for the distributionof plant species in different flood-prone environments. Key words: Gibberellin, growth, Oryza sativa, rice, submergence     

Multi-stress resilience in plants recovering from submergence

Submergence limits plants' access to oxygen and light, causing massive changes in metabolism; after submergence, plants experience additional stresses, including reoxygenation, dehydration, photoinhibition and accelerated senescence. Plant responses to waterlogging and partial or complete submergence have been well studied, but our understanding of plant responses during post-submergence recovery remains limited. During post-submergence recovery, whether a plant can repair the damage caused by submergence and reoxygenation and re-activate key processes to continue to grow, determines whether the plant survives. Here, we summarize the challenges plants face when recovering from submergence, primarily focusing on studies of Arabidopsis thaliana and rice (Oryza sativa). We also highlight recent progress in elucidating the interplay among various regulatory pathways, compare post-hypoxia reoxygenation between plants and animals and provide new perspectives for future studies.     

Mercury detoxification with transgenic plants and other biotechnological breakthroughs for phytoremediation

Summary Phytoremediation, or the use of plants for removal and detoxification of environmental pollutants, has garnered great attention in recent years. This heightened interest is both scientifically, due the fascinating processes utilized by plants for tolerance and removal of harmful compounds, and commercially, as plants represent a more environmentally compatible and less expensive method of site remediation compared to standard approaches. The majority of phytoremediation studies have been with naturally occurring plant species after empirical discovery of their exceptional abilities for such applications. This has led to a growing body of literature and wider acceptance for plants in many aspects of environmental rehabilitation. However, this has occurred with little understanding of their basic biological mechanisms of action or investigation of alternative strategies for enhancing the capabilities of these extraordinary plants. Better understanding of plant physiology, biochemistry and molecular biology in response to specific contaminants is critical for optimization and advancement of phytoremediation. By applying the tools of biotechnology, the potential for plants as an aggressive method of environmental decontamination may be realized. This paper will serve as an introduction to the first Symposium assembled exclusively to review the use of molecular genetic and biotechnological methods for improvement of plants for phytoremediation. After a brief review of the other invited speakers' works (with more extensive papers following), the pioneering work using bacterial genes expressed in plants for removal of mercurial compounds will be surveyed.     

Manipulation of inositol metabolism for improved plant survival under stress: a “network engineering approach”

Emergence of high-throughput sequencing tools and omics technologies paved the way for systems biology in last decade. While we have started to look at the biology of the plant in a more unified manner, the integration of such knowledge in agricultural biotechnology has become an arena of potential interest. The network of several central molecules operating in various life and developmental processes are now more adequately known, and fine tuning of such molecule pools, if connected to stress response, can result in enhanced stress tolerance of plants.This review interprets the potential of manipulation of myo-inositol and its derivatives in generation of transgenic crop plants. Being a molecule of central importance in plant life, inositol is connected to numerous life processes. The exploration of such pathways indicates that inositol itself and many of its derivatives can impart abiotic stress tolerance (against salinity, dehydration, chilling or oxidative stress) to plants when overexpressed. We propose that engineering inositol metabolic network is a potential approach towards stress-tolerant transgenic crop plant generation and thus its exploitation in agricultural biotechnology is the call of time.     

Genes/QTLs affecting flood tolerance in rice

The adaptation of deepwater rice to flooding is attributed to two mechanisms, submergence tolerance and plant elongation. Using a QTL mapping study with replicated phenotyping under two contrasting (water qualities) submergence treatments and AFLP markers, we were able to identify several genes/QTLs that control plant elongation and submergence tolerance in a recombinant inbred rice population. Our results indicate that segregation of rice plants in their responses to different flooding stress conditions is largely due to the differential expression of a few key elongation and submergence tolerance genes. The most important gene was QIne1 mapped near sd-1 on chromosome 1. The Jalmagna (the deepwater parent) allele at this locus had a very large effect on internal elongation and contributed significantly to submergence tolerance under flooding. The second locus was a major gene, sub1(t), mapped to chromosome 9, which contributed to submergence tolerance only. The third one was a QTL, QIne4, mapped to chromosome 4. The IR74 (non-elongating parent) allele at this locus had a large effect for internal elongation. An additional locus that interacted strongly with both QIne1 and QIne4 appeared near RG403 on chromosome 5, suggesting a complex epistatic relationship among the three loci. Several QTLs with relatively small effects on plant elongation and submergence tolerance were also identified. The genetic aspects of these flooding tolerance QTLs with respect to patterns of differential expression of elongation and submergence tolerance genes under flooding are discussed. Received: 13 December 1999 / Accepted: 14 March 2000<@head-com-p1a.lf>Communicated by G. Wenzel     

Endophyte-mediated adjustments in host morphology and physiology and effects on host fitness traits in grasses

Endophytic fungi have been shown to increase tolerance of hosts to biotic and abiotic stresses and in some cases alter growth and development of plants. In this article we evaluate some effects that clavicipitaceous endophytes have on development and physiology of plant tissues. We postulate that oxidative stress protection is the fundamental underlying benefit conferred by many endophytes, accounting for frequently observed enhanced disease resistance, drought tolerance, heavy metal tolerance and tolerance to numerous additional oxidative stresses. We hypothesize that endophyte-mediated oxidative stress protection of the host is the result of at least two processes, including: (1) secretion of reactive oxygen species (ROS) from endophytic mycelia into plant cells; and (2) secretion of auxin from endophytic mycelia into plant cells. Both processes result in an increase in ROS in plant tissues; and stimulate plant tissues to increase activities of antioxidant systems. Auxin is suggested to function in suppression of plant cell death and may be important in maintaining the endophyte–plant symbiosis.     

Cadmium toxicity in crop plants and its alleviation by arbuscular mycorrhizal (AM) fungi: An overview

Cadmium (Cd), a toxic metal released into agricultural settings induces numerous changes in plant growth and physiology. The main known mechanisms of Cd toxicity include its affinity for sulfhydryl groups in proteins and its ability to replace some essential metals in active sites of enzymes, thus causing inhibition of enzyme activities and protein denaturation. This article reviews detrimental effects of Cd toxicity on the functional biology of plants and summarizes the mechanisms that are activated by plants to prevent the absorption or to detoxify Cd ions such as synthesis of antioxidants, osmolytes, phytochelatins, metallothioneins, etc. Arbuscular mycorrhizal (AM) fungi are reported to be present on the roots of plants growing in metal-contaminated soils and play an important role in metal tolerance. Through mycorrhizal symbiosis, heavy metals are immobilized in the rhizosphere through precipitation in the soil matrix, adsorption onto the root surface or accumulation within roots, and compartmentalized in aboveground parts of the plant. This article unfolds the potential role of AM fungi in enhancing Cd tolerance of plants.     

An amalgamation between hormone physiology and plant ecology: A review on flooding resistance and ethylene

Both distribution of terrestrial plants and species composition in flood plain communities are strongly influenced by flooding (waterlogging, partial submergence, or submergence). The interaction between a plant's flooding resistance and the seasonal timing, duration, depth, or frequency of flooding often determines plant distribution in flood plains. Flooding may be accompanied by marked physical changes in light, carbon availability, diffusion rate of gases, and density of the environment. Various physiological processes may be affected by these flooding-induced physical changes, including aerobic respiration, photosynthesis, and processes in which light acts as a source of information (e.g., phytochrome photoequilibrium). Certain plant species acclimatize and adapt to these physical changes to relieve the constraints imposed by the flooded environment. Underwater photosynthesis, enhanced shoot elongation, adventitious roots, and aerenchyma formation are typical adaptive responses which are believed to improve the oxygen status of submerged plants. Ethylene and other plant hormones play a central role in the initiation and regulation of most of these adaptive responses, which permit escape from anaerobiosis. Mechanisms of direct tolerance of anaerobic conditions, such as a vigorous fermentative respiratory pathway, are of particular importance when the plant is very deeply submerged, or during the night and when the water is sufficiently turbid to exclude light.Studies on the cosmopolitan genus Rumex, distributed in a flooding gradient on river flood plains, have integrated plant hormone physiology with plant ecology. Rumex species showed a high degree of interspecific variation in ethylene production rates, endogenous ethylene concentrations, ethylene sensitivity, and ethylene-mediated growth responses. The field distribution of Rumex species in flooding gradients is explained in terms of a balance between endogenous ethylene concentrations and sensitivity towards this growth regulator (ethylene economy). Much data has been gathered using a recently developed laser-driven photoacoustic detection technique capable of detecting six parts of ethylene in 10¹² parts air flowing continuously over the plant.