Exogenous carbon turnover within the soil food web strengthens soil carbon sequestration through microbial necromass accumulation

Exogenous carbon turnover within soil food web is important in determining the trade-offs between soil organic carbon (SOC) storage and carbon emission. However, it remains largely unknown how soil food web influences carbon sequestration through mediating the dual roles of microbes as decomposers and contributors, hindering our ability to develop policies for soil carbon management. Here, we conducted a ¹³C-labeled straw experiment to demonstrate how soil food web regulated the residing microbes to influence the soil carbon transformation and stabilization process after 11 years of no-tillage. Our work demonstrated that soil fauna, as a “temporary storage container,” indirectly influenced the SOC transformation processes and mediated the SOC sequestration through feeding on soil microbes. Soil biota communities acted as both drivers of and contributors to SOC cycling, with 32.0% of exogenous carbon being stabilizing in the form of microbial necromass as “new” carbon. Additionally, the proportion of mineral-associated organic carbon and particulate organic carbon showed that the “renewal effect” driven by the soil food web promoted the SOC to be more stable. Our study clearly illustrated that soil food web regulated the turnover of exogenous carbon inputs by and mediated soil carbon sequestration through microbial necromass accumulation.     

An Absorbing Markov Chain approach to understanding the microbial role in soil carbon stabilization

The number of studies focused on the transformation and sequestration of soil organic carbon (C) has dramatically increased in recent years due to growing interest in understanding the global C cycle. While it is readily accepted that terrestrial C dynamics are heavily influenced by the catabolic and anabolic activities of microorganisms, the incorporation of microbial biomass components into stable soil C pools (via microbial living cells and necromass) has received less attention. Nevertheless, microbial-derived C inputs to soils are now increasingly recognized as playing a far greater role in stabilization of soil organic matter than previously believed. Our understanding, however, is limited by the difficulties associated with studying microbial turnover in soils. Here, we describe the use of an Absorbing Markov Chain (AMC) to model the dynamics of soil C transformations among three microbial states: living microbial biomass, microbial necromass, and C removed from living and dead microbial sources. We find that AMC provides a powerful quantitative approach that allows prediction of how C will be distributed among these three states, and how long it will take for the entire amount of initial C to pass through the biomass and necromass pools and be moved into atmosphere. Further, assuming constant C inputs to the model, we can predict how C is eventually distributed, along with how much C sequestrated in soil is microbial-derived. Our work represents a first step in attempting to quantify the flow of C through microbial pathways, and has the potential to increase our understanding of the microbial role in soil C dynamics.     

可用于二氧化碳捕获过程的微生物碳酸酐酶的挖掘与改造

二氧化碳排放量的急剧上升引起全球温室效应加剧。碳酸酐酶是地球上反应速率最快的几种酶之一,可以大幅提高CO_2捕获和生物矿化的效率,从而降低大气中CO_2的排放量。但捕获过程在高温条件,而CO_2生物矿化形成CaCO_3的过程则需要碱性条件。因此,迫切需要筛选出既嗜热又耐碱的碳酸酐酶以用于CO_2捕获,极端微生物是这类酶的重要来源之一。文中系统、深入地介绍了目前从极端微生物或利用蛋白质工程技术获取嗜热、耐碱的碳酸酐酶的最新研究进展,同时简要介绍了一些新型固定化碳酸酐酶的方法。最后指出当前研究的重点应致力于拓宽寻找碳酸酐酶的范围,改良蛋白质工程改造技术,研发高效廉价、易于放大的固定化方法,为减轻温室效应、延缓全球变暖这一迫切需要解决的问题提供新思路。     

土壤微生物碳素利用效率研究进展

土壤微生物碳素利用效率(CUE)是指微生物将吸收的碳(C)转化为自身生物量C的效率,也称为微生物的生长效率。土壤微生物CUE是生态系统C循环中的重要生理生态学参数,影响着生态系统的C固持、周转、土壤矿化以及温室气体排放等过程。在全球环境变化背景下,认识土壤微生物CUE的变异及其影响机制,对于更好的认识生态系统C循环过程及其对全球变化的响应具有重要意义。概述了CUE的定义及其测定方法,重点综述和分析土壤微生物CUE的变异及影响因素取得的研究进展。基于现有研究的分析得出,土壤微生物CUE通常表示为微生物的生长与吸收的比值,分为基于微生物生长速率、微生物生物量、底物吸收速率和底物浓度变化等方法进行测定。土壤微生物CUE在0.2—0.8的范围内变化,这种变异主要受到来自热力学、生态环境因子、底物养分质量和有效性、化学计量平衡以及微生物群落组成的影响。今后土壤微生物CUE的研究应加强对微量代谢组分的定量分析,生物和环境要素交互影响的调控机理解析,以及微生物动态生理响应过程的碳循环模型优化。     

草地土壤固碳潜力研究进展

土壤固碳功能和固碳潜力已成为全球气候变化和陆地生态系统研究的重点。草地土壤有机碳库,作为陆地土壤有机碳库的重要组成部分,其较小幅度的波动,将会影响整个陆地生态系统碳循环,进而影响全球气候变化。因此,深入研究草地土壤固碳功能和固碳潜力对于适应和减缓气候变化具有重要意义。在土壤固碳潜力相关概念界定基础上,结合《2006年IPCC国家温室气体清单指南》,从样点及区域尺度上综述了目前关于草地土壤固碳潜力的一般估算方法,同时对各类方法的特点及适用性进行了评述,提出了草地生态系统固碳潜力研究概念模型。最后在对草地土壤固碳的影响因素及固碳措施总结的基础上,阐明了草地土壤有机碳固定研究中存在的问题和发展前景。     

紫色土人工林生态系统碳库与碳吸存变化

采用时空代换法,以福建省宁化县严重退化紫色土人工林生态系统为对象,按侵蚀强度由强到弱选取4种生态恢复措施Ⅰ、Ⅱ、Ⅲ、Ⅳ,对比研究了碳库与碳吸存能力．结果表明,随着恢复程度的提高,生态系统的碳吸存能力逐渐增加,即Ⅰ<Ⅱ<Ⅲ<Ⅳ,4种措施生态系统碳库分别为1．4、8．5、25．6和37．6t·hm^-2;CO2年同化量分别是712．87、1458．01、9718．10和11109．56k·hm^-2．可见,恢复过程中的生态系统是本地区重要的碳汇之一．水土保持工程措施与生物措施相结合应是退化生态系统生态恢复的重要手段,但是减少人为干扰才是目前较为合理的恢复策略,使森林生态系统成为大气中CO2的一个重要的碳汇．     

黑土坡耕地有机碳变化及固碳潜力分析

东北黑土区自开垦以来有机质含量逐渐降低,有机碳库长期处于亏缺状态,理论上也具有较大的固碳潜力。以典型黑土区长期传统作业的坡耕地(30—60 a)为研究对象,通过测定不同坡位(坡上侵蚀区和坡下沉积区)、不同土层(表土和底土)有机碳分布特征,估算不同开垦年限黑土固碳潜力及其恢复至固碳潜力所需的时间。结果表明:(1)总有机碳、有机碳密度以及碳饱和水平均表现为沉积区显著大于侵蚀区,表土显著大于底土,且均在开垦30a坡耕地达到最大值;(2)固碳潜力表现为侵蚀区(1.24—2.89 kg/m~2)显著大于沉积区(0.79—1.04 kg/m~2),底土(0.83—3.59 kg/m~2)显著大于表土(0.6—2.53 kg/m~2),随着开垦年限的增加表现为开垦30 a显著小于开垦40 a、60 a;(3)黑土坡耕地(30—60 a)侵蚀区和沉积区土壤(0—50 cm)达到固碳潜力分别需要20—181 a和13—66 a。黑土坡耕地固碳潜力的时空变异性在农业经营以及修复管理过程中需引起重视,以实现黑土资源的可持续利用。     

植物功能性状与湿地生态系统土壤碳汇功能

湿地生态系统碳平衡对气候变化极为敏感,是陆地生态系统碳循环响应全球变化的重要环节。然而,湿地生态系统碳汇调节机制仍不十分清楚,并且对影响因子的研究多集中在非生物因子上。综述了植物功能性状和功能性状多样性对湿地生态系统土壤碳汇功能的影响,阐明了生物因子对生态系统碳循环响应全球变化的重要性,介绍了植物功能性状对生态系统碳输入和输出过程的影响,简述了植物功能性状多样性的研究现状及其在指示生态系统碳汇功能现状和预测未来趋势等方面的应用。从优势植物、植物种间关系和植物-微生物种间关系3方面总结了植物功能性状多样性直接和间接影响生态系统碳循环的途径。展望了植物功能性状和功能性状多样性与湿地生态系统土壤碳汇功能的研究前景。     

Plant functional traits and soil carbon sequestration in contrasting biomes

Plant functional traits control a variety of terrestrial ecosystem processes, including soil carbon storage which is a key component of the global carbon cycle. Plant traits regulate net soil carbon storage by controlling carbon assimilation, its transfer and storage in belowground biomass, and its release from soil through respiration, fire and leaching. However, our mechanistic understanding of these processes is incomplete. Here, we present a mechanistic framework, based on the plant traits that drive soil carbon inputs and outputs, for understanding how alteration of vegetation composition will affect soil carbon sequestration under global changes. First, we show direct and indirect plant trait effects on soil carbon input and output through autotrophs and heterotrophs, and through modification of abiotic conditions, which need to be considered to determine the local carbon sequestration potential. Second, we explore how the composition of key plant traits and soil biota related to carbon input, release and storage prevail in different biomes across the globe, and address the biome-specific mechanisms by which plant trait composition may impact on soil carbon sequestration. We propose that a trait-based approach will help to develop strategies to preserve and promote carbon sequestration.     

Variability of soil carbon sequestration capability and microbial activity of different types of salt marsh soils at Chongming Dongtan

Variations in the soil carbon sequestration capability of different types of salt marsh soils at Chongming Dongtan and its influencing factors were studied by analyzing the soil organic carbon (SOC) content, organic matter input and microbial activities. The results indicated that the total SOC content at Area A (southeast of Dongtan, sandy soil with Phragmites communis) was only 46.11% of that of Area B (northeast of Dongtan, clay soil with mixed P. communis and Spartina alterniflora) (P = 0.000 < 0.05), but their organic matter input per year was almost identical. These findings implied that Area B had a lower output of SOC. The microbial biomass at Area A was 3.83 times greater than that at Area B (P = 0.049 < 0.05); the soil catalase and invertase activities at Area A, which were related to carbon metabolism, were 60.31% (P = 0.006 < 0.05) and 34.33% (P = 0.021 < 0.05) higher than at Area B, respectively; and the soil respiration at Area A was also higher than at Area B. These findings implied that the microbial activities at Area A were greater than those at Area B, and therefore the carbon metabolism was rapid, resulting in increased SOC output at Area A. Increased water content and salinity in the clay soil at Area B may inhibit the microbial activities, thereby reducing the decomposition of the organic matter and enhancing carbon sequestration. In addition, some artificial measures for controlling spread of S. alterniflora at Area B (mowing/digging and tillage (M + D); mowing/digging and tillage/waterlogging (M + D + W)) were found to generally improve the microbial activity of soil, thereby increasing SOC output. However, when the two different physical controlling modes were compared, the SOC and microbial activities of the soil subjected to the M + D + W treatment were relatively high and low, respectively, due to waterlogging restraining the microbial metabolism. These findings indicated that the difference in microbial activities was the important factor leading to variability in the SOC sequestration capability between Areas A and B. Additionally, with the exception of soil texture and vegetation types, environmental conditions and artificial turbulence also influenced microbial activities of soil, and hence SOC output and organic carbon sequestration capability.     

红壤丘陵景观单元土壤有机碳和微生物生物量碳含量特征

为了探讨我国亚热带红壤丘陵区不同利用方式下土壤有机碳(SOC)和土壤微生物生物量碳(SMB-C)含量的特征,在湖南省桃源县选取典型样区,通过密集取样,分析了红壤丘陵景观单元内水田、旱地、林地、果园4种典型利用方式下表层土壤(0～20 cm)SOC和SMB-C含量.结果表明,典型红壤丘陵景观单元中SOC含量高低的顺序为水田(16.0 g·kg^-1)＞旱地(11.2 g·kg^-1) ＞果园(9.5 g·kg^-1)＞林地(8.4 g·kg^-1),SMB-C含量则为水田(830 mg·kg^-1)＞旱地(361 mg·kg^-1)＞林地(200 mg·kg^-1)＞果园(186 mg·kg^-1),且在不同利用方式下SOC与SMB-C均呈极显著正相关(P＜0.01),说明本研究区内各土地利用类型的土壤SMB-C含量变化可以敏感地指示SOC的动态.研究结果还表明,将我国亚热带红壤丘陵林地开垦为果园或耕地后,表层土壤 SOC含量不可能降低.     

Long‐term nitrogen addition modifies microbial composition and functions for slow carbon cycling and increased sequestration in tropical forest soil

Nitrogen (N) deposition is a component of global change that has considerable impact on belowground carbon (C) dynamics. Plant growth stimulation and alterations of fungal community composition and functions are the main mechanisms driving soil C gains following N deposition in N‐limited temperate forests. In N‐rich tropical forests, however, N deposition generally has minor effects on plant growth; consequently, C storage in soil may strongly depend on the microbial processes that drive litter and soil organic matter decomposition. Here, we investigated how microbial functions in old‐growth tropical forest soil responded to 13 years of N addition at four rates: 0 (Control), 50 (Low‐N), 100 (Medium‐N), and 150 (High‐N) kg N ha^?1 year^?1. Soil organic carbon (SOC) content increased under High‐N, corresponding to a 33% decrease in CO₂ efflux, and reductions in relative abundances of bacteria as well as genes responsible for cellulose and chitin degradation. A 113% increase in N₂O emission was positively correlated with soil acidification and an increase in the relative abundances of denitrification genes (narG and norB). Soil acidification induced by N addition decreased available P concentrations, and was associated with reductions in the relative abundance of phytase. The decreased relative abundance of bacteria and key functional gene groups for C degradation were related to slower SOC decomposition, indicating the key mechanisms driving SOC accumulation in the tropical forest soil subjected to High‐N addition. However, changes in microbial functional groups associated with N and P cycling led to coincidentally large increases in N₂O emissions, and exacerbated soil P deficiency. These two factors partially offset the perceived beneficial effects of N addition on SOC storage in tropical forest soils. These findings suggest a potential to incorporate microbial community and functions into Earth system models considering their effects on greenhouse gas emission, biogeochemical processes, and biodiversity of tropical ecosystems.     

Temporal changes in soil microbial biomass carbon in an arable soil. Consequences for soil sampling

Sugar beet, winter wheat and winter barley were planted within a crop rotation on an arable soil with conventional soil management. Soil samples were taken monthly from different depths of the whole plough layer (0–10, 10–20 and 20–30 cm) during a 56 month period. The samples were analysed for microbial biomass carbon using the substrate-induced respiration technique. Temporal changes in the amount of microbial biomass carbon were observed. Within a year, microbial biomass-C varied from low values (−15% of total mean) in winter to high values (+15% of total mean) in summer. Relative deviations from the annual means were calculated for each month in the year to demonstrate these fluctuations. Temporal changes in microbial biomass-C depended on the sources of sample variation (5 years, 3 crops, 3 sampling depths). The highest relative deviation from the annual mean microbial biomass-C was attributable to the factor “year”. Less variations were caused by “crops” and “sampling depth”. Soil microbial biomass-C remained constant during frost periods. From the observed temporal changes, recommendations for a suitable date for soil sampling are given, which allows a representative estimation of the mean annual microbial biomass-C content in arable soils.     

Stratification ratio of soil organic carbon as an indicator of carbon sequestration and soil quality in ecological restoration

The stratified distribution of soil organic carbon (SOC) provides a potential means of eliminating the difference in soil background for understanding its response to ecological processes. We assessed the feasibility of SOC stratification ratio (SR) as an index to estimate the dynamics of SOC sequestration and soil quality during ecological restoration. SOC, total nitrogen, and available nitrogen contents were measured at restored sites containing three vegetation types with different stand ages and slope gradients, also at sites with three kinds of agricultural management on the hilly Loess Plateau, China. SR and SOC density (SOCD) showed a consistently significant trend of linear increase along the revegetation chronosequences. The proportion of the annual increase rates of SR to SOCD were approximately 1:15 and 1:5 for SR₁ (0–5:5–10 cm) and SR₂ (0–5:20–30 cm), indicating that SR of the shallow soil layers (0–10 cm) could estimate SOC accumulation to a depth of 30 cm. SRs significantly increased owing to the ecosystem restorations. Also, SRs could discriminate the difference in SOC sequestration and soil quality between vegetation types. SR, however, could not precisely indicate the variation of SOC sequestration and soil quality under different agricultural management. The study suggested that SR was an efficient indicator of the dynamics of SOC sequestration and soil quality, and an SR₂ (0–5:20–30 cm) >2 indicated a distinct improvement of SOC sequestration and soil quality in ecological restoration on the hilly Loess Plateau.     

Managing for soil carbon sequestration: Let’s get realistic

Improved soil management is increasingly pursued to ensure food security for the world's rising global population, with the ancillary benefit of storing carbon in soils to lower the threat of climate change. While all increments to soil organic matter are laudable, we suggest caution in ascribing large, potential climate change mitigation to enhanced soil management. We find that the most promising techniques, including applications of biochar and enhanced silicate weathering, collectively are not likely to balance more than 5% of annual emissions of CO₂ from fossil fuel combustion.     

On fertilizer‐induced soil carbon sequestration in China's croplands

Applications of fertilizer, often thought to enhance carbon sequestration in agricultural soils, are of no value to the mitigation of climate change if the carbon dioxide released during the production and distribution of nitrogen fertilizer exceeds the incremental carbon storage in soils from its use. Nitrogen fertilizer is also a source of the greenhouse gas nitrous oxide. The recent analysis of carbon sequestration in cropland soils of China does not apply these ‘discounts’ to the global warming mitigation expected from greater use of fertilizer; doing so would likely eliminate all the climate benefits of the postulated enhanced carbon sequestration.     

不同林型土壤微生物有机碳降解基因的多样性

应用寡聚核苷酸基因芯片,分析了米亚罗林区冷杉原始林（M—Y）和20世纪60年代云杉人工林（M-60）土壤微生物的功能基因多样性。该功能基因芯片含有与有机碳降解、碳固定、氮、磷、硫循环和金属抗性相关的1961个基因探针。在M—Y和M-60样地中分别检测到39和62个具有较强杂交信号（SNR≥2）的功能基因,其基因多样性水平指数分别为3．59和4．04,杂交信号强度总值分别为480280和630560。M—Y和M-60样地中分别检测到32个和37个有机碳降解基因,占总基因的82％和60％,这些基因分属于22个不同的基因类群,分别参与木质素、木聚糖、几丁质等有机碳的降解过程。有机碳降解基因在两个样地中存在较大的多样性和丰度差异。这些结果说明了大多数的土壤微生物直接参与了土壤有机碳的降解,同时,林型不同显著影响了土壤微生物群落结构和有机碳降解微生物的多样性。     

引黄灌区土壤有机碳密度剖面特征及固碳速率

为揭示灌溉耕作对土壤有机碳密度剖面(0—100 cm)分布产生的影响,通过在宁夏引黄灌区进行实地调查与采样,以无灌溉耕作的自然土壤作为对照,研究不同灌溉耕作时间序列下灌区土壤有机碳密度的剖面分布特征,并估算其平均固碳速率。结果表明:灌区土壤有机碳含量具有随土层深度增加而下降的剖面分布特征,灌溉耕作对增加表层土壤有机碳含量作用最明显;灌区土壤剖面碳密度与灌溉耕作时间和土壤类型均显著相关(P0.01),相关系数分别为0.63和0.74,且因灌溉耕作时间和土壤类型的不同,土壤有机碳密度差异性显著(P0.05);灌溉耕作影响的土层深度及剖面土壤有机碳密度的增加量因灌溉耕作时间长短的不同而异;引黄灌区5类土壤的平均固碳速率为0.53 MgC·hm-2·a-1。引黄灌溉耕作在增加农田土壤固碳中发挥着重要作用。     

长期施肥下红壤性水稻土有机碳储量变化特

研究了1982—2012年长期不同施肥下红壤性水稻土土壤有机碳含量变化、固碳趋势及外源碳输入对土壤固碳的贡献.结果表明： 施肥能提高土壤有机碳含量,连续30年不同施肥后,各施肥处理土壤有机碳含量趋于稳定,有机无机配施的土壤有机碳含量为21.02～21.24 g·kg^-1,增加速率为0.41～0.59 g·kg^-1·a^-1,单施化肥的土壤有机碳含量为15.48 g·kg^-1.各有机无机肥配施处理土壤的平均有机碳储量为43.61～48.43 t C·hm^-2,历年平均土壤有机碳储量显著大于单施化肥处理.土壤固碳速率与年均投入碳量呈显著指数正相关.本试验条件下,每年需要增加外源有机碳为0.12 t C·hm^-2才能维持土壤有机碳的平衡.     

环丙沙星对土壤微生物量碳和土壤微生物 群落碳代谢多样性的影响

采用氯仿熏蒸浸提法和Biolog法,分析环丙沙星作用下的土壤微生物量碳和微生物群落碳代谢多样性,以揭示环丙沙星在环境中残留对土壤微生物学性状的影响.结果表明,环丙沙星(wCIP≥0.1 μg/g)对土壤微生物量碳含量影响显著(P＜0.05),土壤中环丙沙星浓度愈高,微生物量碳含量愈低,100μg/g的环丙沙星处理使土壤微生物量碳含量下降58.69％.环丙沙星对土壤微生物群落碳代谢功能影响显著,环丙沙星降低了土壤微生物对碳水化合物、羧酸、氨基酸、聚合物、酚类和胺类的碳源利用率;环丙沙星(wCIP≥0.1 μg/g)显著影响了土壤微生物群落碳源代谢强度和代谢多样性,但不同浓度的环丙沙星对土壤微生物群落碳代谢功能的影响不同,0.1、1、10 μg/g的环丙沙星处理对土壤微生物群落碳代谢功能的影响主要表现在处理前期(用药第7天、21天),这种影响在处理后期(用药第35天)表现不明显,100μg/g的环丙沙星在用药的前期和后期均显著影响土壤微生物群落碳代谢功能,土壤中环丙沙星积累到该浓度可能对土壤微生物群落碳代谢功能产生难以逆转的长期影响.