Methanocorpusculaceae fam. nov., represented by Methanocorpusculum parvum,Methanocorpusculum sinense spec. nov. and Methanocorpusculum bavaricum spec. nov.

Two new methanogenic bacteria, Methanocorpusculum sinense spec. nov. strain DSM 4274 from a pilot plant for treatment of distillery wastewater in Chengdu (Province Sichuan, China), and Methanocorpusculum bavaricum spec. nov. strain DSM 4179, from a wastewater pond of the sugar factory in Regensburg (Bavaria, FRG) are described. Methanocorpusculum strains are weakly motile and form irregularly coccoid cells, about 1 μm in diameter. The cell envelope consists of a cytoplasmic membrane and a S-layer, composed of hexagonally arranged glycoprotein subunits with molecular weights of 90000 (Methanocorpusculum parvum), 92000 (M. sinense), and 94000 (M. bavaricum). The center-to-center spacings are 14.3 nm, 15.8 nm and 16.0 nm, respectively. Optimal growth of strains is obtained in the mesophilic temperature range and at a pH around 7. Methane is produced from H₂/CO₂, formate, 2-propanol/CO₂ and 2-butanol/CO₂ by M. parvum and M. bavaricum, whereas M. sinense can only utilize H₂/CO₂ and formate. Growth of M. sinense and M. bavaricum is dependent on the presence of clarified rumen fluid. The G+C content of the DNA of the three strains is ranging from 47.7–53.6 mol% as determined by different methods. A similar, but distinct polar lipid pattern indicates a close relationship between the three Methanocorpusculum species. The polyamine patterns of M. parvum, M. sinense and M. bavaricum are similar, but distinct from those of other methanogens and are characterized by a high concentration of the otherwise rare 1,3-diaminopropane. Quantitative comparison of the antigenic fingerprint of members of Methanocorpusculum revealed no antigenic relationship with any one of the reference methanogens tested. On the basis of the distant phylogenetic position of M. parvum and the data presented in this paper a new family, the Methanocorpusculaceae fam. nov., is defined.     

Development of microsatellite markers in Myotis sodalis and cross-species amplification in M. gricescens, M. leibii, M. lucifugus, and M. septentrionalis

The Indiana bat (Myotis sodalis) is a highly endangered vespertilionid bat whose distribution is associated with limestone caves in the eastern United States. We present nine new polymorphic nuclear microsatellite markers for Myotis sodalis developed using an enriched library method. A total of 62 M. sodalis from two populations were used to estimate genetic diversity parameters. In M. sodalis, the number of alleles observed for each locus ranged from 17 to 48 alleles and expected heterozygosity ranged from 0.894 to 0.973. The 9 microsatellite markers were also tested on M. gricescens, M. leibii, M. lucifugus, and M. septentrionalis. These polymorphic microsatellite markers provide a valuable tool for investigating the population genetics of these species and will provide important genetic data useful for the conservation and recovery of the endangered Indiana bat.     

Enzymatic and antigenic analyses of strains of Mycobacterium bovis,M. bovis BCG,and M. tuberculosis

Strains of Mycobacterium bovis, M. bovis BCG, and M. tuberculosis, including a so-called Canetti strain, were analyzed by means of two-dimensional immunoelectrophoresis (2D-IE), 2D-IE combined with enzyme staining, and multilocus enzyme electrophoresis (MEE). The results demonstrated a close antigentic and enzymatic resemblance among all the strains tested, even though the BCG strains could be divided into two groups based on the presence of one precipitinogen. Eight of the precipitinogens were shown to correspond to enzymes in M. bovis BCG and 10 in M. tuberculosis. Thus, catalase, isocitrate dehydrogenase, malate dehydrogenase, peroxidase, and several others were identified. By means of MEE the strains of M. tuberculosis, M. bovis, and M. bovis BCG could be differentiated. The analyses further indicated that the M. tuberculosis strain Canetti was more closely related to M. bovis than to M. tuberculosis.     

Isolation and chemical characterization of lipopolysaccharides from four Mycoplana species (M. bullata,M. segnis,M. ramosa and M. dimorpha)

Lipopolysaccharides (LPS), isolated from four Mycoplana species, i.e. the type strains of M. bullata, M. segnis, M. ramosa and M. dimorpha, were characterized onto their chemical composition and their respective lipid A-types. Those of M. bullata and M. segnis showed on DOC-PAGE an R-type character and had lipid A's of the Lipid A_DAG-type which exclusively contained 2,3-diamino-2,3-dideoxy-d-glucose as lipid A sugar. LPS's of M. ramosa and M. dimorpha showed, although only weakly expressed, ladder-like patterns on DOC-PAGE indicating some S-type LPS's and lipid A of the d-glucosamine type (Lipid A_GlcN). M. bullata LPS contained mannose and glucose in major amounts and additionally l-glycero-d-mannoheptose, whereas M. segnis LPS was composed of rhamnose, mannose and glucose together with both, d-glycero-d-manno- and l-glycero-d-manno-heptoses in a molar ratio of 1:2. All LPS's contained 2-keto-3-deoxy-octonic acid (Kdo), phosphate and an unidentified acidic component X. In addition to X, M. segnis LPS contained glucuronic and galacturonic acids, whereas M. ramosa LPS contained only galacturonic acid. Acetic acid hydrolysis of the LPS resulted in splitting off lipid A moieties, very rich in 3-hydroxy fatty acids, in particular in 3-OH-12:0 (in Lipid A_DAG), or in 3-OH-14:0 (in Lipid A_GlcN). Analysis of the 3-acyloxyacyl residues revealed major amounts of amide-linked 3-OH(3-OH-13:0)12:0 in lipid A of M. bullata and 3-OH(12:0)12:0 in lipid A of M. segnis. The rare 4-oxo-myristic acid (4-oxo-14:0) was observed only in M. bullata LPS, where it is ester-linked. Amide linked diesters could not be traced in M. ramosa and M. dimorpha. All four lipid A's lacked erster-bound acyloxyacyl residues.Non-standard abbreviations DAG 2,3-diamino-2,3-dideoxy-d-glucose - Kdo 2-keto-3-deoxy-octonate - LPS lipopolysaccharide - PITC phenyl isothiocyanate - NANA N-acetyl neuraminic acid     

Loperamide exerts a direct bactericidal effect against M. tuberculosis,M. bovis,M. terrae and M. smegmatis

Tuberculosis (TB) is caused by Mycobacterium tuberculosis. TB is highly prevalent, characterized by the constant occurrence of drug-resistant cases, and confounded by the incidence of respiratory disease caused by non-tuberculous mycobacteria (NTB). Expanding the spectrum of drugs for the treatment of TB is indispensable. Loperamide, an antidiarrhoeal drug, enhances immune-driven antimycobacterial activity, and we aimed to evaluate its bactericidal activity against M. tuberculosis, Mycobacterium bovis BCG, Mycobacterium terrae and Mycobacterium smegmatis. Loperamide exhibited an inhibitory effect against all mycobacterial species tested, with MICs of 100 and 150 μg ml⁻¹. Thus, loperamide is a mycobactericidal drug with potential as adjunctive therapy for TB and NTB infections.     

Miliusa cambodgensis sp. nov. (Annonaceae) from Cambodia and M. astiana,M. ninhbinhensis spp. nov. from Vietnam

The genus Miliusa in Cambodia and Vietnam is reviewed. Cambodia and Vietnam each harbors six species of Miliusa, including three which are described as new to science: one from Cambodia (Miliusa cambodgensis sp. nov.), the other two from Vietnam (M. astiana and M. ninhbinhensis spp. nov.). In addition, a complete nomenclature and relevant information about the Miliusa species previously known from Cambodia and Vietnam are provided, including keys to the Cambodian and Vietnamese species, the designation of a lectotype for M. baillonii and the synonymization of M. balansae var. elongatoides, M. chunii and M. sinensis with M. balansae.     

Nucleotide substitutions and small-scale insertion produce size and antigenic variation in group A streptococcal M1 protein

The presence of M protein on the surface of group A streptococci (GAS) confers the ability of the cell to resist phagocytosis in the absence of type-specific antibodies. It undergoes antigenic variation with more than 80 different serotypes having been defined. We have sequenced the M protein gene (emm1.1) from strain CS190 and present evidence that individual nucleotide substitutions are responsible for sequence variation in the N-terminal non-repeat region of emm1.1 and these substitutions have altered antibody recognition of opsonic epitopes. The N-terminal non-repeat domains of two other closely related strains, 71-155 and 76-088, were found to have sequence identical to emm1.1 with the addition of a 21 bp insert. This study provides the first evidence that nucleotide substitutions and small insertions are responsible for size and antigenic variation in the N terminal non-repeat domain of the M protein of GAS.     

Electron microscopic studies of three gliding Mycoplasmas,Mycoplasma mobile,M. pneumoniae,and M. gallisepticum,by using the freeze-substitution technique

Freeze-substitution technique was applied to thin-sectioning electron microscopy of Mycoplasma mobile, M. pneumoniae, and M. gallisepticum, all of which can glide in the direction of the tapered cell end. M. mobile presented a flask-like cell morphology. An additional layer was found around the tapered end. The cell images of M. pneumoniae showed a protruding membrane extension, the attachment organelle, composed of a low density space inside the cells and featuring a filamentous dense core anchored to the terminal end. The detailed structures were more obvious than those observed by the conventional chemical fixation. The cells of M. gallisepticum presented irregular dense granules, in contrast to regular particles, which can be observed in the images of chemically fixed thin sections, in the rear portion of the cells. Received: 4 September 2001 / Accepted: 25 September 2001     

Revision of genus Melamphaes (Melamphaidae). II. Multi-Raker species: M. polylepis, M. falsidicus sp. nova, M. pachystomus sp. nova, M. macrocephalus, M. leprus

The second part of the publication is devoted to the Melamphaes species (family Melamphaidae), which are characterized by 20 and more rakers on the first gill arch, by seven soft rays in the ventral fin, by absence of a temporal spine, by 14–15 rays in the pectoral fin, and by 11 abdominal vertebrae. M. polylepis is characterized by circumtropical range (Atlantic Ocean, Indian Ocean, western and central Pacific Ocean). Newly described species M. falsidicus is described from the northern Atlantic Ocean, where it was sampled between 34°N and 58°N. Before, this species was defined as M. microps. Another newly described species, M. pachystomus, is described along the Peruvian Coast. M. macrocephalus is redescribed. This species inhabits the eastern tropical Pacific Ocean (approximately between 30°N and 23°S). One of the studied specimens of M. macrocephalus was characterized by larger body size (SL = 128 mm) than was described before for this species. M. leprus is known currently by single findings from the eastern tropical Atlantic Ocean (between 11°N and 4°S). This species was also found in the samples obtain in the Gulf of Guinea.     

Study of H-2 mutations in mice. IV. A comparison of the mutants M505 and Hz1 by skin grafting and serological techniques

The line B6.M505 is congenic with C57BL/6JY and carries a mutant form of theH-2 ^b haplotype designatedH-2 ^bd . The mutant site 505 was located by the F₁ tests in theK end of theH-2 gene complex. The M505 mice are histoincompatible with the B6.C(Hz1) line (haplotypeH-2 ^ba ) carrying another mutation in theK end ofH-2 ^b . Inability of M505 to complement Hz1 in tests with B6 skin grafting is considered as an evidence that the same gene was altered by both mutations. The gained H antigens of two mutants can cross-react in vivo as revealed by accelerated rejection of Hz1 skin grafts by B6 recipients presensitized with M505 spleen cells. The lost antigenic determinants are not identical as shown by accelerated rejection of B6 skin grafts by Hz1 hosts preimmunized with M505 spleen cells. Absorptions of the antiserum ASY-015, (d×a) anti-i, anti-H-2.33 with M505 spleen cells did not clear forH-2 ⁱ ,H-2 ^b andH-2 ^ba , and absorptions with Hz1 did not clear forH-2 ⁱ ,H-2 ^b , andH-2 ^bd . These results show that changes of histocompatibility determinants may be accompanied by loss of some haptenic determinants in the Hz1 and M505 mutations.     

The karyotypes ofMicroseris bigelovii,M. douglasii,andM. pygmaea (Asteraceae)

The karyotypes of the three annuals,Microseris bigelovii, M. douglasii andM. pygmaea, consist of 2n = 18, small, submetacentric chromosomes. Length, centromere position, C-banding pattern, silver staining of NOR's, and the use of base specific fluorochromes, allow the identification of four of the nine chromosome pairs. The banding pattern ofM. bigelovii andM. pygmaea is identical, but intraspecific differences are found between strains ofM. douglasii.     

Design and Analysis of Vaccine Studies by HALLORAN,M. E., LONGINI JR., I. M., and STRUCHINER,C. J.

Design and Analysis of Vaccine Studies (M. E. Halloran, I. M. Longini Jr. and C. J. Struchiner) Neal Alexander A SAS/IML Companion for Linear Models (J. J. Perrett) James E. Gentle Introducing Monte Carlo Methods with R (C. P. Robert and G. Casella) Brian D. Ripley Introductory Time Series with R (P. S. P. Cowpertwait and A. V. Metcalfe)
W. K. Li Linear Model Methodology (A. I. Khuri) Ronald R. Hocking     

Serum albumin and erythrocyte adenosine deaminase polymorphisms in Asian macaques with special reference to taxonomic relationships amongMacaca assamensis,M. radiata,andM. mulatta

Serum albumin (Alb) and erythrocyte adenosine deaminase (ADA) polymorphisms in Asian macaques were investigated by means of starch gel electrophoresis. The materials comprise a total of 2,323 blood samples from eight species, namely,Macaca fuscata,M. mulatta,M. cyclopis,M. fascicularis,M. nemestrina,M. speciosa,M. radiata, andM. assamensis. It was observed that three Alb phenotypes were controlled by two codominant alleles, Alb _mac ^A and Alb _mac ^B and six ADA phenotypes by four codominant alleles, ADA _mac ¹ , ADA _mac ² , ADA _mac ³ , and ADA _mac ⁴ . The taxonomic relationships amongM. assamensis,M. radiata, andM. mulatta were analyzed by measuring theNei's (1975) genetic distance. The result supportedHill andBernstein's (1969) postulation thatM. assamensis was more closely related phylogenetically toM. radiata than toM. mulatta.     

A Primer of Ecology with R by STEVENS,M. H. H.

A Primer of Ecology with R (M. H. H. Stevens) Péter Sólymos Handbook on Analyzing Human Genetic Data: Computational Approaches and Software (S. Lin and H. Zhao, Editors) Peter M. Visscher From Finite Sample to Asymptotic Methods in Statistics (P. K. Sen, J. M. Singer, and A. C. Pedroso de Lima) Miodrag Lovric Dynamic Linear Models with R (G. Petris, S. Petrone, and P. Campagnoli) Helio S. Migon Functional Data Analysis with R and Matlab (J. O. Ramsay, G. Hooker, and S. Graves) Hervé Cardot Continuous Bivariate Distributions, 2nd edition (N. Balakrishnan and C.‐D. Lai) Márcia D'Elia Branco Brief Reports by the Editor The Elements of Statistical Learning: Data Mining, Inference, and Prediction, 2nd edition. (T. Hastie, R. Tibshirani, and J. Friedman) Gene Expression Studies Using Affymetrix Microarrays (H. Göhlmann and W. Talloen)     

SEPERATION OF MALLOMONAS DUERRSCHMIDTIAE SP. NOV. FROM M. CRASSISQUAMA AND M. PSEUDOCORONATA: IMPLICATIONS FOR PALEOLIMNOLOGICAL RESEARCH1

A new species, Mallomonas duerrschmidtiae, with characteristics common to both Mallomonas crassisquama (Asmund) Fott and Mallomonas pseudocoronata Prescott, is described from acidic lakes low in specific conductance and total phosphorus concentration. Characteristics of scales, bristles and spines serve to separate the three taxa. The length and area of scales of M. duerrschmidtiae are significantly larger than those of M. crassisquama but smaller than those of M. pseudocoronata. Although the anterior submarginal ribs of scales of M. duerrschmidtiae may become extended to form short wings, the scales lack the large forward projecting anterior wings characteristic of scales of M. pseudocoronata. Features of the dome and junction between the arms of the V-rib and anterior submarginal ribs also serve to distinguish between the three species. Cells of M. duerrschmidtiae also possess long, smooth and thick spines on their posterior scales and lack helmet bristles. M. duerrschmidtiae has different maxima along pH, temperature, specific conductance, total phosphorus and seasonal gradients than either M. crassisquama or M. pseudocoronata. Discriminant analysis, based on nine morphological characters, was used to successfully classify body scales of the three species. The importance of M. duerrschmidtiae as a bioindicator in future lake monitoring and paleolimnological inference studies is discussed.     

Taxonomic notes on Macromitrium densum (Bryopsida) with a new synonym,M. brevissimum

Macromitrium densum Mitt. (from Nepal) is well differentiated from other Asian congeners by its lingulate and strongly rugose leaves having cucullate, obtuse to retuse apices with a mucro, distinctly bulging upper and median leaf cells, and tuberculate lower and basal cells. Comparisons of the type and other specimens of M. brevissimum Dixon from Thailand with those of M. densum show that they belong to a single species, and hence, that the names are synonyms. By including M. brevissimum, the geographic range of M. densum is considerably expanded to cover Nepal, Thailand to north Peninsular Malaysia and Vietnam. The phenetic relationship between M. densum and other species of Macromitrium is also discussed.     

Taxonomic status of Monotropastrum humile, with special reference to M. humile var. glaberrimum (Ericaceae, Monotropoideae)

Taxonomic treatment of the achlorophyllous monotropoid plant Monotropastrum humile is still unclear and confusing because of the lack of detailed morphological analyses and molecular phylogeny. In particular, the taxonomic status of a glabrous variety, M. humile var. glaberrimum, is under debate. Our detailed examination of the morphological characteristics of living plants revealed that M. humile var. glaberrimum can be easily distinguished from the putative conspecific taxon M. humile var. humile by characteristics not previously recognized, namely the shape and color of the floral disc. Most morphological features characterizing Cheilotheca were also found in M. humile var. glaberrimum. Moreover, there was considerable nucleotide differentiation in the internal transcribed spacer (ITS)2 sequences of M. humile var. humile and var. glaberrimum. Molecular analysis of the phylogenetic relationship of M. humile var. humile, var. glaberrimum, and other monotropoids using ITS2 sequences showed that two varieties of M. humile formed a monophyletic clade with a member of a different genus, Monotropa L., but obvious phylogenetic relationships among these three taxa were not obtained. Thus we conclude that Monotropastrum humile var. glaberrimum should be treated as a distinct species. However, the generic affiliation of M. humile var. glaberrimum could not be determined because of its intermediate character state combination and the insufficient characterization of related species. We strongly suggest that Monotropastrum as a whole needs re-evaluation.     

THE RED ALGAL EPIPHYTES MICROCLADIA COULTERI AND M. CALIFORNICA (RHODOPHYCEAE,CERAMIACEAE). II. BASIPHYTE SPECIFICITY1

The phenomenon of basiphyte specificity in the settlement and growth of the red algal epiphytes Microcladia californica Farl. and M. coulteri Harv. was examined by studying the interface with their respective basiphytes and by cross-inoculation experiments. Microcladia californica attaches only to the surface of its single basiphyte Egregia menziesii (Aresch.) Turn. whereas M. coulteri penetrates the tissue of a wide range of basiphytes. The pattern of primary rhizoid development in both epiphytes determines the mode of attachment and may influence the range of basiphytes possible for each epiphyte. Cross-inoculation experiments show that Microcladia californica is not able to colonize the basiphytes of M. coulteri, Iridaea and Prionitis, or Ulva. The mechanisms by which these algae restrict the growth of epiphytes include short life-span, “cuticle peeling” and chemical defense. Microcladia coulteri, which naturally colonizes Iridaea and Prionitis, has evolved mechanisms to counteract the antifouling effects of those basiphytes. The question of why Egregia is the exclusive substratum for M. californica remains undetermined. However, Egregia may provide the appropriate ecological conditions and a surface topography conductive to M. californica spore settlement and growth.     

Transthyretin gene V30M,H90N,and (del9) mutations in cardiomyopathy patients from St. Petersburg

A search of transthyretin (TTR) gene mutations was performed in patients with cardiomyopathies from St. Petersburg. Mutations H90N, V30M and deletion (del9) of nucleotides GACTTCTCC in position 6776 from the start codon of the TTR gene (in position 98782 according to reference sequence AC079096 (NCBI) was found. The H90N mutation in the third exon of TTR gene was detected in a son of a cardiomyopathy patient and in his mother, which lacked any clinical manifestations. Mutation V30M in exon 2 of TTR gene was found in heterozygous in one of the probands. Deletion (del9) was revealed in a patient with cardiomyopathy and in his two daughters from different marriages, who had no clinical manifestations of the disease. All the mutations revealed in this study were previously identified in other populations.