Molecular barcoding of skates (Chondrichthyes: Rajidae) from the southern Northeast Atlantic

Serra‐Pereira, B., Moura, T., Griffiths, A. M., Gordo, L. S. & Figueiredo, I. (2010). Molecular barcoding of skates (Chondrichthyes: Rajidae) from the southern Northeast Atlantic. —Zoologica Scripta, 40, 76–84. Due to their vulnerability to fishing pressure, many species of skate (Rajidae) in the Northeast Atlantic are undergoing declines in abundance. The assessment of stock status and subsequent proposal of management measures are often complicated by high levels of species diversity and endemism, coupled with morphological and ecological conservatism, which makes distinguishing between species difficult. To improve the identification of skates and investigate the phylogenetic position of endemic species the cytochrome c oxidase subunit I (COI) was sequenced in 12 species (Dipturus oxyrinchus, Leucoraja naevus, Leucoraja circularis, Neoraja iberica, Raja brachyura, Raja clavata, Raja maderensis, Raja microocellata, Raja miraletus, Raja montagui, Raja undulata, Rostroraja alba) inhabiting the Portuguese waters. Based on sequence divergence R. maderensis and R. clavata only differ by 1% of the 652 bp COI sequence, questioning the recognition of R. maderensis (considered to be endemic to Madeira and the Azores), as a reproductively isolated species. Otherwise, there was clear phylogenetic support for the different genera and all the remaining species, although the genetic divergence was low compared to other chordates. In particular, COI analysis allowed clear identification of the morphologically similar species R. brachyura and R. montagui.     

Characterisation of polymorphic microsatellite markers for skates (Elasmobranchii: Rajidae) from expressed sequence tags

Simple sequence repeat markers (SSRs, microsatellites) were characterised for skates (Elasmobranchii: Rajidae) from published expressed sequence tags (ESTs) of Leucoraja erinacea. These were tested in four European species (Raja clavata, Raja montagui, Dipturus batis, and Leucoraja naevus). Thirteen of the fourteen amplified loci were polymorphic in at least one species. Polymorphic loci possessed on average 4.5–5.9 alleles per species, and expected heterozygosity ranged from 0.05 to 0.88. Possible null alleles were detected at three loci, while one locus showed significant deviation from Hardy–Weinberg Equilibrium proportions. Three locus-pairs exhibited significant linkage disequilibrium in one or more species. This marker set will be valuable for population genetic analyses of the focal taxa, and may prove useful for studies of other skate species.     

Possible occurrence of character displacement in the sympatric skates Raja erinacea and R. ocellata (Pisces: Rajidae)

Synopsis Raja erinacea and R. ocellata are sibling species which are positively correlated with each other by occurrence and numerical abundance. In sympatry the species undergo interactive segregation; R. erinacea feeds on a higher percentage of epifauna and R. ocellata feeds on a higher percentage of infauna.An isolated allopatric population of R. ocellata occurs in the Gulf of St. Lawrence which is phenotypically intermediate between the sympatric populations of R. erinacea and R. ocellata in characters related to feeding e.g. size, number of tooth rows in the upper jaw, and shape of the upper jaw. It appears probable that the allopatric population represents the morphological state of R. ocellata before it became sympatric with R. erinacea; divergence in size, number of tooth rows, and shape of the upper jaw between the two species developed after establishment of sympatry. These divergences in character traits, related to feeding, reduced competition between the two sympatric species and permitted the present wide overlap in their ranges.Character displacement is evidently rare in demersal fishes inhabiting the flat and soft bottoms of the northwestern Atlantic because the three other pairs of sibling species that occur there are parapatrically distributed and thus would not compete for resources. Raja erinacea and R. ocellata may have been restrained from establishing parapatry by another species pair of skates (R. senta and R. radiata) which have a complementary distribution and similar feeding habits of R. erinacea and R. ocellata but which occur in deeper water.     

The Limonium binervosum aggregate (Plumbaginaceae) in the British Isles

A taxometric analysis of 153 colonies of the agamospermous Limonium binervosum aggregate in the British Isles has revealed an ordered hierarchy of variation. A taxonomic treatment of the group describes five new species, redefines four others and describes other infraspecific variants as subspecies or varieties. Each species is morphologically distinct and has a defined geographic range. There are four widespread and morphologically variable species and five geographically restricted species (four monotypic). Limonium recurvum , previously described as a microspecies endemic to a small area of the Dorset Coast, has been widened to include all triploid (2 n = 27) L. binervosum agg. variants found also in W and N Ireland, SW Scotland and Cumbria. All other taxa are tetraploid, usually with 2 n = 35.     

Sexual dimorphism of external morphological characters in some deepwater skates (Rajidae,Rajiformes, Chondrichthyes) of the North Atlantic

Our studies of the external morphology of five species of deepwater skates (Amblyraja jenseni, Bathyraja pallida, B. richardsoni, Rajella bigelowi, and R. kukujevi) showed that their males and females differ significantly in 9 characters in the first species, 14 characters in the second, 11 characters in the third and fourth, and 10 characters in the fifth. Sexual differences occur most frequently in the length of the first gill slit (in four species out of five), the length of the nasal curtain, the mouth width, and the length of the third gill slit (in three species out of five), the width and length of the disc, the length of the first and second dorsal fin bases, the tail height at the tip of the ventral fin, the length of the fifth gill slit, the distance between the first and fifth gill slits, the interspiracular distance, the preanal length, distance from the tip of the snout to the maximum disc width, and the interorbital distance (in two species out of five).     

Phosphoglucose isomerase polymorphism in the common goby, Pomatoschistus microps (Krøyer) (TeleosteirGobiidae), around the British Isles

Phosphoglucose isomerase (PGI) polymorphism has been investigated by horizontal starch-gel electrophoresis in the common goby, Pomatoschistus microps (Krøyer), from 21 localities around the British Isles and at Roscoff, France. Sixteen PGI phenotypes were observed, consistent with occurrence of four alleles at each of the two loci (A,B). In the Teign estuary at Shaldon, Devon, seasonal fluctuation in PGI-A allele frequencies was accompanied in some months by departure from Hardy-Weinberg equilibrium. At this locality, a significant change in PGI-A allele frequencies was found with increasing modal age of sample (within a year class) but not between year-classes over eight years. Similar stability is noted for other areas. Major alleles (PGI-A2, A3; PGI-B2, B3) were found at all localities, but with marked differences in proportions. Atlantic coast populations tended to have higher A2 and B2 frequencies than those of the North Sea and English Channel, with Irish Sea populations having high A2 but low B2. Historical and selective causes for this geographical variation are discussed. A significant correlation exists between the frequencies of the major PGI-A alleles and maximum monthly mean sea temperature for the same area.     

The status of the otter (Lutra lutra) in the British Isles

National field surveys for otters were carried out between 1977 and 1981. The species is apparently absent from large areas of England, although healthy populations still occur in the south-west. In many other areas, populations are isolated and fragmented and there is some evidence for continuing declines. In Wales the otter is rare or absent from the south and parts of the north. Healthy populations are present in the Highland Region of Scotland, on the north and west coasts and in the islands but there is evidence of a decline in the south and east-central lowlands. Otters are widespread and common in Ireland which sustains the best of the known populations in Europe.
Pollution by pesticides probably caused the initial rapid decline of the species but habitat destruction is increasingly important and where habitat is poor, human disturbance assumes greater significance. There is no evidence of competition with mink. The otter is now a protected species but if it is to recover some of its former range, remaining habitat must be retained.
While otter populations have decreased over much of northern Europe, the animal survives, albeit somewhat precariously, in a few southern parts of the continent.     

Pattern of variation of agamospermous Limonium (Plumbaginaceae) in the British Isles

An investigation of cytological, palynological, and taxometric variation in Limonium binervosum (G. E. Sm.) C. E. Salmon has revealed an extensive pattern of hierarchical relationships within this agamospermous group in the British Isles. The group is either triploid (2n = 27) or aneuploid tetraploid (usually 2n = 35) with a highly jumbled karyotype. Pollen is either not produced or of very low stainability (in the range 0–38%). Well stained pollen grains are usually abnormally large resulting from a failure of a meiotic division. These facts as well as the presence of only a single self-incompatible polledstigma morph in the majority of the group suggest that it is obligately agamospermic. The very strong correlation of taxometric relationship and geographical distance between variants suggests that evolution in the group has occurred by the gradual accumulation of mutations giving rise to morphologically and geographically related seed clones. The hierarchical pattern of variation as revealed by cluster analysis has been used as the basis of a hierarchical classification of the group.     

DNA-based identification of Alaska skates (Amblyraja, Bathyraja and Raja: Rajidae) using cytochrome c oxidase subunit I (coI) variation

Variation at the mitochondrial cytochrome c oxidase subunit I (mt-COI) gene was examined in 15 species of North Pacific skates. Thirteen species had unique sequences, indicating that a DNA-based barcoding approach may be useful for species identification.     

Notomegarhynchus navonae n. gen. and n. sp. (Eucestoda: Tetraphyllidea), from skates (Rajidae: Arhynchobatinae) in the southern hemisphere

Notomegarhynchus n. gen. (Eucestoda: Tetraphyllidea) is proposed to accommodate Notomegarhynchus navonae n. gen., n. sp. from Atlantoraja castelnaui in Mar del Plata, Argentina. Notomegarhynchus shetlandicum n. comb. from Bathyraja eatonii and B. maccaini in South Shetlands region, Antarctica, is a second species in the genus. Notomegarhynchus belongs to the Echeneibothriinae within the Phyllobothriidae. It can be distinguished from all other tetraphyllidean genera by the structure of the scolex in form of a massive myzorhynchus consisting of a proscolex and an apical organ, both of which are nonretractable and noninvaginable; in addition, there are 4 pedunculated and nonloculate acetabula. Notomegarhynchus shetlandicum is differentiated from N. navonae particularly in details of acetabular and myzorhynchus morphology, arrangement of testes, and shape of eggs. The inclusion of Notomegarhynchus in the Echeneibothriinae requires emendation of the diagnosis of the subfamily to include taxa possessing postvaginal testes. In addition, new terminology is proposed for distinct regions of the scolex.     

Life History Differences between Rare and Common Flowering Plant Species of California and the British Isles

Generalizations about rare and endangered species are important for the development of conservation management policy and for understanding of the nature of rarity. Therefore, we sought such generalizations by statistically comparing eight life history and reproductive traits of rare and common plant species in two better-studied but climatically and geographically distinct Holarctic floras-those of California and the British Isles. Trends were often similar in both floras. Rare and common species differ significantly for a number of characters. In both floras, a woody habit was significantly more frequent for the rare species than the common species. Also, in both floras, monocarpy was less frequent in the rare species, significantly so in California. The rare species of both floras were, on average, significantly shorter in stature than the common species. This trend in stature remained significant when nonwoody species were compared but did not do so for woody species. Rare and common species differed with regard to their frequency of inflorescence structure types, but these differences were not concordant for both floras. The rare species of the British Isles had significantly higher proportions of mixed and polymorphic flower colors; the trend was not significant in California. In both floras, rare species had a higher frequency of many-seeded fruits, significantly so in California. California's rare species had a significantly higher frequency of dehiscent fruits than common species; the trend was reversed and not significant for the British Isles. We found no significant differences for characters associated with fruit dispersal. Finally, in California, the median altitude of the range of the common species was significantly greater than that of the rare species. At present, these correlates cannot be assigned as possible causes or consequences of rarity. Nonetheless, they may represent "high-risk" traits that could be used to identify other species already at risk or potentially at risk of becoming rarer.     

Aspects of the population genetics of Mytilus (Mytilidae; Mollusca) in the British Isles

Starch gel electrophoresis was used to study variation at 11 loci in mussels sampled mainly from British coastal sites. Two types of mussel were identified, Mytilus edulis, the common mussel and its southern relative Mytilus galloprovincialis. Several partially diagnostic loci were used to map the distribution of the two forms. Mytilus edulis was present at all sites sampled in Britain and Ireland but was at low frequency in SW England; M. galloprovincialis was detected in SW England, the south and west of Ireland. Scotland and NE England, but was absent from south Wales, the Irish sea coasts of Wales and Ireland, and SE England. Apart from the occurrence of M. galloprovincialis in NE England, this distribution conforms with the results of studies using morphological characters and parallels the distribution of many other southern species in Britain. At the microgeographical level, M. edulis was found to prefer more sheltered and estuarine conditions than M. galloprovincialis. Analysis using the best diagnostic loci showed that hybridization is occurring between M. edulis and M. galloprovincialis at all localities where they occur sympatrically but that the extent of hybridization varies considerably between localities. The distribution of localities having high proportions of hybrid individuals is best interpreted by assuming that hybrids have higher fitness than parental types at these localities. A study was made of variation within and between those localities where only M. edulis individuals were observed. Little significant geographic variation in allele frequency was detected, but significant deficits of heterozygotes compared with Hardy-Weinberg expectations were seen for most loci. Analysis suggests that the Wahlund effect is not involved and that the most likely cause of the deficit is low frequencies of null alleles. In M. edulis no differences in phenotypic variance in shell height and width were observed between samples of multiply heterozygous and multiply homozygous individuals and no genetic differences were found between juveniles and adults. Overall little evidence was found that balancing selection is responsible for maintenance of the polymorphisms studied in M. edulis. The pattern of geographic variation in gene frequencies in Mytilus in the British Isles is discussed in relation to variation in the south and north of Europe and North America. It is concluded that steep clines in gene frequencies in M. edulis observed by other workers in the Baltic and in Long Island Sound cannot be attributed to the presence of M. galloprovincialis.     

Tortella bambergeri (Schimp.) Broth. in the British Isles

Abstract

The moss Tortella bambergeri (Schimp.) Broth. is added to the described British bryophyte flora. It differs from fragile-leaved forms of T. tortuosa (Hedw.) Limpr. in having the apical quarter of the costa with quadrate, papillose abaxial cells and in having the peristome teeth twisted by a half turn instead of one and a half turns. Other identification features are discussed, and the habitat and distribution of T. bambergeri in Britain are described. Most records are from sandstone boulders in western Britain.     

The Wintering of Blackcaps in the British Isles

During this century the Blackbird has become one of the commonest urban and suburban song-birds in Britain. In an effort to discover why town life attracts so many Blackbirds, the author has looked closely at the B.T.O. data, derived mainly from ringing and nest records, and has found interesting differences in productivity between London and rural populations.     

Species composition and distribution patterns of baetid nymphs (Baetidae: Ephemeroptera) in a Japanese stream

Species composition and distributional patterns among nymphs of five baetid genera (Ephemeroptera), Baetis, Tenuibaetis, Labiobaetis, Nigrobaetis and Alainites were investigated in Yura Stream, Kyoto Prefecture. I collected 13 species: B. sahoensis, B. thermicus, B. sp. F, B. sp. J, B. sp. M1, B. sp. S1, T. sp. E, T. sp. H, L. sp. G, N. chocoratus, N. sp. D, N. sp. I and A. yoshinensis, among which B. thermicus, B. sp. S1 and T. sp. E were dominant, whereas B. sahoensis, B. sp. F, B. sp. M1 and N.sp. I were scarce. Based on their longitudinal distribution patterns, the 13 species were classified into upper species, upper-middle species, middle species, middle-lower species and lower species. Baetis thermicusand A. yoshinensis showed long downstream tails. Baetis sp. J and N. sp. D extended their longitudinal distribution upstream in summer. With regard to habitat preference, Alainites and Labiobaetis were restricted to riffle and vegetated zones, respectively. Tenuibaetis consisted of riffle-vegetated zone species, whereas Baetis and Nigrobaetiscontained both riffle species and ubiquitous species. Habitat partitioning (`sumiwake') along the watercourse (macro-sumiwake) was evident in Tenuibaetis, and that between habitat types (micro-sumiwake) in Labiobaetis vs. Baetis (rhodanigroup species) and Labiobaetis vs. Alainites.     

Distribution and ecology of small cow-wheat (Melampyrum sylvaticum L.; Scrophulariaceae) in the British Isles

Summary

Melampyrum sylvaticum L. is an annual, hemiparasitic herb which mainly grows in light woodland and on upland ledges in northern Britain and Ireland. Its distribution is poorly known due to confusion with the variable M. pratense. A review of its ecology and distribution has been carried out and it has now been recorded from 83 10-km squares in the British Isles, including three in England and two in Wales; an updated distribution map is given. It is probably declining slowly in the lowlands at the margins of its range due to afforestation, development of dense shade, over-grazing and intensive agriculture.