Genomic screening for artificial selection during domestication and improvement in maize

BACKGROUND: Artificial selection results in phenotypic evolution. Maize (Zea mays L. ssp. mays) was domesticated from its wild progenitor teosinte (Zea mays subspecies parviglumis) through a single domestication event in southern Mexico between 6000 and 9000 years ago. This domestication event resulted in the original maize landrace varieties. The landraces provided the genetic material for modern plant breeders to select improved varieties and inbred lines by enhancing traits controlling agricultural productivity and performance. Artificial selection during domestication and crop improvement involved selection of specific alleles at genes controlling key morphological and agronomic traits, resulting in reduced genetic diversity relative to unselected genes. SCOPE: This review is a summary of research on the identification and characterization by population genetics approaches of genes affected by artificial selection in maize. CONCLUSIONS: Analysis of DNA sequence diversity at a large number of genes in a sample of teosintes and maize inbred lines indicated that approx. 2 % of maize genes exhibit evidence of artificial selection. The remaining genes give evidence of a population bottleneck associated with domestication and crop improvement. In a second study to efficiently identify selected genes, the genes with zero sequence diversity in maize inbreds were chosen as potential targets of selection and sequenced in diverse maize landraces and teosintes, resulting in about half of candidate genes exhibiting evidence for artificial selection. Extended gene sequencing demonstrated a low false-positive rate in the approach. The selected genes have functions consistent with agronomic selection for plant growth, nutritional quality and maturity. Large-scale screening for artificial selection allows identification of genes of potential agronomic importance even when gene function and the phenotype of interest are unknown. These approaches should also be applicable to other domesticated species if specific demographic conditions during domestication exist.     

Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis)

Analysis of fine scale genetic structure in continuous populations of outcrossing plant species has traditionally been limited by the availability of sufficient markers. We used a set of 468 SNPs to characterize fine‐scale genetic structure within and between two dense stands of the wild ancestor of maize, teosinte (Zea mays ssp. parviglumis). Our analyses confirmed that teosinte is highly outcrossing and showed little population structure over short distances. We found that the two populations were clearly genetically differentiated, although the actual level of differentiation was low. Spatial autocorrelation of relatedness was observed within both sites but was somewhat stronger in one of the populations. Using principal component analysis, we found evidence for significant local differentiation in the population with stronger spatial autocorrelation. This differentiation was associated with pronounced shifts in the first two principal components along the field. These shifts corresponded to changes in allele frequencies, potentially due to local topographical features. There was little evidence for selection at individual loci as a contributing factor to differentiation. Our results demonstrate that significant local differentiation may, but need not, co‐occur with spatial autocorrelation of relatedness. The present study represents one of the most detailed analyses of local genetic structure to date and provides a benchmark for future studies dealing with fine scale patterns of genetic diversity in natural plant populations.     

Formation of aerenchyma in roots of Zea mays in aerated solutions, and its relation to nutrient supply

The formation of lysigenous cavities (aerenchyma) in the root cortex of maize, Zea mays L. cv. Capella, under well-aerated conditions has been studied in relation to the composition of the nutrient solutions. Nitrogen, either supplied as nitrate or as ammonium, reduced the cavity formation by the roots. This reduction was most apparent at nitrate concentrations above 2 mM. Cavities were increasingly formed when the nitrate concentration was decreased and they reached their largest dimensions in roots growing in water. Thus, inadequate availability of nitrogen leads, under acrated conditions, to deterioration of cortex cells and cavity formation in the maize roots. It is suggested that cavity formation in these roots is connected with reduced nitrogen assimilation.     

玉米类受体蛋白激酶基因ZmLRRPK1的cDNA克隆与表达分析

富亮氨酸重复区的类受体蛋白激酶(LRR-RLKs)在植物对多种信号的响应中发挥作用。应用电子克隆的方法在玉米中克隆了一个LRR-RLKs类基因的全长cDNA,命名为ZmLRRPK1（GenBank接受号为EU873320）。推断的ZmLRRPK1蛋白含有594个氨基酸,分子量为66kDa,等电点pI为5.42,具有典型的LRR-RLKs结构域。半定量RT-PCR结果表明,在ABA、甘露醇和氯化钠的诱导下,ZmLRRPK1在玉米胚芽鞘中表达并在24 h内保持较高的转录水平。     

Proline Metabolism and Transport in Maize Seedlings at Low Water Potential

The growing zone of maize seedling primary roots accumulatesproline at low water potential. Endosperm removal and excisionof root tips rapidly decreased the proline pool and greatlyreduced proline accumulation in root tips at low water potential.Proline accumulation was not restored by exogenous amino acids.Labelling root tips with [¹⁴C]glutamate and [¹⁴C]proline showedthat the rate of proline utilization (oxidation and proteinsynthesis) exceeded the rate of biosynthesis by five-fold athigh and low water potentials. This explains the reduction inthe proline pool following root and endosperm excision and theinability to accumulate proline at low water potential. Theendosperm is therefore the source of the proline that accumulatesin the root tips of intact seedlings. Proline constituted 10% of the amino acids released from the endosperm. [¹⁴C]Prolinewas transported from the scutellum to other parts of the seedlingand reached the highest concentration in the root tip. Less[¹⁴C]proline was transported at low water potential but becauseof the lower rate of protein synthesis and oxidation, more accumulatedas proline in the root tip. Despite the low biosynthesis capacityof the roots, the extent of proline accumulation in relationto water potential is precisely controlled by transport andutilization rate.     

A study of the impaired growth of roots of Zea mays seedlings at low oxygen concentrations

Abstract. Seedlings of Zea mays L. were grown in the dark at 27°C. Four-day-old seedlings were then exposed for 3 days to solutions equilibrated with gas mixtures to give O₂ concentrations between 0.02 and 0.25 mol m^?3. Root growth was impaired just as severely at 0.06 as 0.02 mol O₂ m^?3 while growth at 0.16 mol O₂ m^?3 was about the same as in solutions in equilibrium with air (0.25 mol O₂ m^?3). Growth of young seedlings at low O₂ concentrations was inhibited to the same extent in nutrient solution and 0.5 ml m^?3 CaCl₂, showing that the adverse effect of O₂ deficits on growth was not due to less uptake of inorganic nutrients. Furthermore, at low O₂ concentrations neither exposure of the shoots to a relative humidity of 100% (26.0 g H₂O m^?3) nor excision of the entire shoot enhanced root growth relative to that in plants with shoots at a relative humidity of 50% (13.0 g H₂O m^?3). Therefore, for these seedlings growing in the dark, impairment of root growth at low O₂ concentrations was not a consequence of water deficits in the shoot or of other shoot-root interactions. Total soluble sugars and amino acid concentrations were generally greater at low (0.02–0.06 mol O₂m^?3) than at high O₂ concentrations (0.16–0.25 mol O₂ m ^?3). This applied specifically to the root apices (0–2 mm) and expanding (2–15 mm) tissue except in some experiments where sugar concentrations in expanding tissue were slightly greater at high than at low O₂ concentrations. Critical O₂ pressures for respiration of excised root segments were approximately 0.117 and 0.065 mol O₂ m^?3 in the expanding and expanded zones of the roots, respectively. In contrast, the critical O₂ pressure exceeded 0.20 mol O₂ m^?3 in the apex, suggesting that O₂ supply for metabolic processes is most likely to be sub-optimal in this zone. Our results show clearly that the adverse effects of low O₂ concentrations are unlikely to be a consequence of substrate shortage for either respiration or synthesis of macromolecules; low rates of ATP regeneration in growing root tissues are the logical cause for impaired growth in young seedlings while they are being sustained by seed reserves.     

Increase in glutamate synthase (NADH) activity in maize seedlings in response to nitrate and ammonium nitrogen

Roots and leaves of Zea mays L. cv. Ganga Safed-2 seedlings grown with nutrient solution containing either 10 m M KNO₃ or NH₄Cl or 5 m M NH₄NO₃ had considerably higher glutamate synthase (NADH, EC 1.4.1.14) activity than the corresponding organs from seedlings grown without any nitrogen. The supply of inorganic nitrogen for a short time, i.e. 3 h, to roots and leaves excised from seedlings grown without nitrogen also increased the enzyme activity in these organs. This increase was more pronounced with nitrate than with ammonium nitrogen. When excised roots and leaves from NH₄NO₃-grown seedlings were incubated in a minus nitrogen medium for 24 h, the enzyme activity declined considerably. This decline was inhibited to some extent by nitrogen, especially by nitrate. Inorganic nitrogen prevented similarly the decline in in vitro enzyme activity during 24 h storage at 25°C, more regularly for the root than for the leaf enzyme. The experiments demonstrate the role of inorganic nitrogen in the regulation of glutamate synthase activity.     

铬胁迫下不同品种玉米种子和幼苗的反应及其与铬积累的关系

研究了铬胁迫对玉米(6个品种)种子萌发初期一些生理生态特征的影响,及各种生理指标与幼苗铬积累量间的关系,结果表明,随铬处理浓度的加大而玉米种子萌发率逐渐降低,幼苗株高、根长、鲜物质量和干物质量均逐渐降低;脯氨酸、吸收铬量、可溶性蛋白质、超氧负离子、丙二醛含量逐渐上升,超氧化物歧化酶(SOD)、过氧化物酶(POD)和过氧化氢酶(CAT)活性则逐渐增加,根系活力和硝酸还原酶活性在不同品种玉米中差异较大;所有供试玉米品种中,丙二醛含量、CAT和SOD活性与幼苗铬积累量之间存在显著或极显著的正相关关系。不同玉米品种对Cr3+毒害的反应表现不同,存在品种间差异。     

The effect of a day at low irradiance of a maize crop. II. Photosynthesis, transpiration and respiration

The kinetics of daily photosynthesis, transpiration and dark respiration of shoots of maize plants ( Zea mays L.) were studied in a growth chamber. After one or two days of reduced light intensity, the photosynthesis and the transpiration returned immediately to a level higher than expected. Respiration, which was reduced by at least 50%, returned slowly for over 2 days towards the initial level. These results suggest the existence of reserves of assimilation products which are used up while maintaining the growth of the aerial part in spite of the lack of assimilation. The prolonged reduction of the respiration shows that it is not strongly correlated to photosyntheis or to growth but rather to the amount of available reserves of assimilate.     

Localisation of translocated 14C in roots and root exudates of field-grown maize

The roots of a mature, field-grown maize plant are dimorphic: the primary root and those from the oldest nodes are bare with a heavily lignified cortex arid sloughed epidermis; those from younger nodes, except for a bare elongation zone, have an intact epidermis surrounded by a persistent soil sheath. Sheathed roots consistently have more layers of cortical cells, but the ratio of volumes of cortex to stele (ca 4) and the cross-sectional area of phloem (ca³× 10⁻² mm²) are similar in each type. Assimilated carbon (from ¹⁴ C applied to a small area of one leaf) was translocated to all roots and actively metabolized in cortex and stele of both types. After 1 to 2 days the proportion of ¹⁴C exuded from a given length of mature root into its soil sheath, or into the adjacent unattached soil in the case of bare roots, was the same (5%) in both root types when compared with the ethanol-soluble ¹⁴C in the tissues of this length. Up to 75% of the ethanol-soluble label in the roots was in a cationic fraction (amino acids and unidentified compounds), ca 1% was in an anionic fraction and the remainder was in a neutral fraction (sugars). Approximately equal amounts of soluble ¹⁴C were found in the stele, cortex and laterals.