Reproductive responses of two related coexisting songbird species to environmental changes: global warming, competition, and population sizes

Comparative analyses of interspecific differences in response to climate change can provide important insights into the factors initiating seasonal onset of reproduction in various species and subsequent fitness consequences. We present a comparative analysis based on a 30-year breeding survey of two related migratory songbird species [Reed Warbler Acrocephalus scirpaceus (RW) and Great Reed Warbler A. arundinaceus (GRW)], which coexist in reedbeds by means of various interspecific interactions. The RW advanced breeding by 15 days and shortened its breeding time window, which is a combined effect of higher temperatures, alleviated competition as a consequence of population declines in the dominant GRW, and reduced RW population. Although the breeding period of GRW changed only slightly, its clutch initiation was likewise related to temperature. Most probably, advanced breeding in RW is favoured by changes in food supply and accelerated reed growth, which provides the necessary nest concealment earlier, whereas this does not affect the GRW, a species less vulnerable to nest predation. Clutch size decreased later in the season, so that earlier breeding produced a net increase in both species. An additional increase of clutch size in GRW can be explained by the use of higher-quality territories in today’s smaller population. The main causes of nest losses were predation in RW and adverse weather in GRW, but reproductive success increased over the study period in both species, which was a consequence of larger clutches in RW, but of favourable weather during rearing and fewer total losses in GRW. Our results document that different causal mechanisms are involved in the reproductive changes of the two congeneric species living in the same habitat: RW breeding earlier by making use of competitive release and other ecological improvements, and GRW by benefiting from better rearing conditions. As species respond differentially to climate change depending on ecosystem and biotic interactions, predictions of population dynamics will remain vague until the specific response mechanisms have been elucidated.     

Morphological determinants of signal carrier frequency in katydids (Orthoptera): a comparative analysis using biophysical evidence of wing vibration

Male katydids produce mating calls by stridulation using specialized structures on the forewings. The right wing (RW) bears a scraper connected to a drum‐like cell known as the mirror and a left wing (LW) that overlaps the RW and bears a serrated vein on the ventral side, the stridulatory file. Sound is generated with the scraper sweeping across the file, producing vibrations that are amplified by the mirror. Using this sound generator, katydids exploit a range of song carrier frequencies (CF) unsurpassed by any other insect group, with species singing as low as 600 Hz and others as high as 150 kHz. Sound generator size has been shown to scale negatively with CF, but such observations derive from studies based on few species, without phylogenetic control, and/or using only the RW mirror length. We carried out a phylogenetic comparative analysis involving 94 species of katydids to study the relationship between LW and RW components of the sound generator and the CF of the male's mating call, while taking into account body size and phylogenetic relationships. The results showed that CF negatively scaled with all morphological measures, but was most strongly related to components of the sound generation system (file, LW and RW mirrors). Interestingly, the LW mirror (reduced and nonfunctional) predicted CF more accurately than the RW mirror, and body size is not a reliable CF predictor. Mathematical models were verified on known species for predicting CF in species for which sound is unknown (e.g. fossils or museum specimens).     

Carboxymethylcellulase produced by facultative bacteria from the hind-gut of the termite Reticulitermes hesperus.

Bacillus cereus RW1 and Serratia marcescens RW3, isolated from the hind-gut of the termite Reticulitermes hesperus, both grew well on mesquite wood and produced moderate amounts of carboxymethylcellulase. Carboxymethylcellulose (CMC) gels were depolymerized rapidly by B. cereus RW1 and slowly by S. marcescens RW3. The depolymerization of CMC was pH and temperature sensitive. Depolymerization of gels by growing cultures of B. cereus RW1 and the action of cell-free extracts of B. cereus RW1 on CMC sols were optimum at pH 6.0 and 5.5, respectively. Glucose and cellobiose increased the rate of CMC gel depolymerization. Enzyme synthesis rather than growth was stimulated by the addition of glucose to a culture of RW1 growing on a non-cellulosic substrate. Bacillus cereus RW1 produced both cell-free and cell-bound carboxymethylcellulase.     

Protective mechanism of reduced water against alloxan-induced pancreatic β-cell damage: Scavenging effect against reactive oxygen species

Reactive oxygen species (ROS) cause irreversible damage to biological macromolecules, resulting in many diseases. Reduced water (RW) such as hydrogen-rich electrolyzed reduced water and natural reduced waters like Hita Tenryosui water in Japan and Nordenau water in Germany that are known to improve various diseases, could protect a hamster pancreatic β cell line, HIT-T15 from alloxan-induced cell damage. Alloxan, a diabetogenic compound, is used to induce type 1 diabetes mellitus in animals. Its diabetogenic effect is exerted via the production of ROS. Alloxan-treated HIT-T15 cells exhibited lowered viability, increased intracellular ROS levels, elevated cytosolic free Ca²⁺ concentration, DNA fragmentation, decreased intracellular ATP levels and lowering of glucose-stimulated release of insulin. RW completely prevented the generation of alloxan-induced ROS, increase of cytosolic Ca²⁺ concentration, decrease of intracellular ATP level, and lowering of glucose-stimulated insulin release, and strongly blocked DNA fragmentation, partially suppressing the lowering of viability of alloxan-treated cells. Intracellular ATP levels and glucose-stimulated insulin secretion were increased by RW to 2–3.5 times and 2–4 times, respectively, suggesting that RW enhances the glucose-sensitivity and glucose response of β-cells. The protective activity of RW was stable at 4 °C for over a month, but was lost by autoclaving. These results suggest that RW protects pancreatic β-cells from alloxan-induced cell damage by preventing alloxan-derived ROS generation. RW may be useful in preventing alloxan-induced type 1-diabetes mellitus. This revised version was published online in August 2006 with corrections to the Cover Date.     

四个温带树种树干呼吸的时间动态及其影响因子

揭示树干呼吸(RW)的时空变化规律及其影响因子,不但是模拟和估测森林碳收支的重要内容,而且对解释森林生产力的变化有重要意义。采用红外气体分析法于2008年5-9月份测定了自然条件下东北东部山区4个主要树种(红松Pinus koraiensis,兴安落叶松Larix gmelinii,白桦Betula platyphylla,水曲柳Fraxinus mandshurica)的RW日进程,探索其RW及其温度系数(Q10)的时间变化格局及其影响因子。结果表明:树种、径级、月份及其交互作用均显著地影响RW。测定期间RW的总体平均值分别为:落叶松(3.69μmol·m-·2s-1)、水曲柳(3.24μmol·m-·2s-1)、白桦(1.64μmol·m-·2s-1)、红松(1.62μmol·m-·2s-1)。4个树种的RW的日变化(7月除外)大体上与树干温度(TW)变化一致,呈单峰曲线格局,但峰值出现时间因树种和月份而异,RW比TW滞后2-6h。7月份的RW对TW的响应不明显,呈现S型或无峰的日变化格局。RW日平均的季节变化基本与TW和物候节律相符,呈单峰模式。虽然树种之间Q10的差异显著(波动在1.09-2.95之间),但所有树种Q10的季节变化格局一致,均在8月达到最低值,9月份反弹达到最大值。除白桦之外,同一树种不同个体的RW与其胸径之间有显著的正相关关系,但这种关系的形式和相关程度却因树种而异。在构建森林碳循环机理模型时,应考虑RW及其温度敏感性随树种和时间的变化特性。     

New entomopathogenic nematodes from semi-natural and small-holder farming habitats of Rwanda

Five field surveys for indigenous entomopathogenic nematodes (EPNs) were conducted in 22 semi-natural and 17 small-holder farming habitats across 16 districts of different altitudes in the northern, eastern, southern and Kigali city provinces of Rwanda. In 2014, 216 mixed soil samples were collected and subsamples thereof baited with Galleria mellonella or Tenebrio molitor larvae. Five samples from five locations and habitats were positive for nematodes (2.8%). Nine nematode species/strains were isolated and five successfully maintained. DNA sequence comparisons and morphological examinations revealed Steinernema carpocapsae, Heterorhabditis bacteriophora, as well as two steinernematids and one heterorhabditid with no species designation. The isolates (strains) were named Steinernema sp. RW14-M-C2a-3, Steinernema sp. RW14-M-C2b-1, Steinernema carpocapsae RW14-G-R3a-2, H. bacteriophora RW14-N-C4a and Heterorhabditis sp. RW14-K-Ca. These are the first records of naturally occurring EPNs in Rwanda. It is also the first record of S. carpocapsae from Africa. Finding H. bacteriophora from tropical rather than temperate Africa was surprising. The found nematodes will serve as the basis for efficacy screening, and for mass production in a biocontrol agent factory at Rubona Research Centre of the Rwanda Agriculture Board with the ultimate aim of delivering effective, safe and environmentally benign pest control for soil-inhabiting pests.     

再生水灌溉对草坪根际可培养细菌组成影响

【目的】为了了解再生水灌溉对草坪根际可培养细菌群落组成的影响,【方法】采用稀释平板法,对北京市陶然亭公园内再生水灌区及其对照自来水灌区草坪根际细菌进行了分离,并对其16S rDNA序列进行了分析。【结果】16S rDNA序列分析表明自来水样品分离得到的菌落分属于15个属的20个种,而再生水样品分离得到的菌落分属于18个属的24个种。自来水和再生水灌区草坪根际细菌主要包括变形菌门α亚群(Alphaproteobacteria,分别为9.7%和13.4%)、变形菌门β亚群(Betaproteobacteria,分别为8.1%和12.3%)、变形菌门γ亚群(Gammaproteobacteria,分别为17.9%和42.0%)、拟杆菌门(Bacteroidetes,分别为13.0%和2.9%)、厚壁菌门(Firmicutes,分别为23.6%和10.1%)和放线菌门(Actinobacteria,分别为27.6%和19.6%)其中,芽孢杆菌属(Bacillus sp.)是自来水灌区草坪根际优势菌属(23.6%),而不动杆菌属(Acinetobacter sp.)是再生水灌区根际优势菌属(17.4%)。从不同类群优势菌属看,除变形菌门γ亚群受再生水影响优势菌属在两灌区表现出一定的差异外,其余各亚群优势菌属均未受再生水影响,其中,不动杆菌属是再生水灌区变形菌门γ亚群的优势菌属(41.3%),肠杆菌属(Enterobacter sp.)是自来水灌区变形菌门γ亚群的优势菌属(45.4%)。【结论】这表明,再生水灌溉未改变细菌群落组成类型,但改变了不同类型多度分布状况。具体表现为优势种多度值增加及部分非优势种有无。再生水灌区特有机会性致病菌、植物致病菌和重金属耐性细菌的出现表明再生水灌溉中病原微生物及重金属的控制工作还有待于进一步严格。     

Defects in protein modification precede developmental defects in l(3)c21RRW630, a temperature-sensitive Drosophila developmental mutant

The temperature-sensitive Drosophila developmental mutation, l(3)c21RRW630 (abbreviated RW630) disturbs oogenesis and has a maternal effect on embryogenesis. At restrictive temperature, RW630 alters post-translational modification of three abundant proteins. To examine the causal relationship between these biochemical defects and the developmental defects in RW630, a series of temperature-shift experiments was performed. It was found that defects in protein modification could be detected in RW630 ovaries after RW630 females had been exposed to restrictive temperature for 1 day. RW630 females treated in this fashion produce embryos which contain a low level of unmodified proteins. Nevertheless, these embryos hatch at a normal rate. Since these ovaries and these embryos are developmentally normal, but do show defects in protein modification, it is unlikely that the RW630 developmental defects cause the biochemical defects in RW630. It is more likely that accumulation of unmodified proteins after extended exposure to restrictive temperature produces the developmental defects in RW630.     

不同作物轮作制度对土壤杂草种子库特征的影响

为明确不同作物轮作制度对杂草种子库特征的影响,比较研究了玉米-小麦(MW)、大豆-小麦(SW)轮作和原水稻-小麦(RW)轮作方式下杂草种子库的特征。结果表明,作物轮作显著影响杂草种子库的密度和种类组成,进行玉米-小麦或大豆-小麦轮作2年后,杂草种子库密度分别比稻麦轮作降低27．16％、44．44％。在原水稻-小麦轮作方式下,种子库中主要杂草为陌上菜、异型莎草、菵草、水苋菜、千金子等。玉米-小麦轮作使种子库中马唐、碎米莎草、飘拂草的相对优势度显著上升,鸭舌草、水苋菜、菵草的相对优势度显著下降。而在大豆-小麦轮作方式下,种子库中通泉草、马唐、鳢肠、飘拂草的相对优势度显著上升。玉米-小麦轮作种子库的物种多样性指数高于大豆-小麦轮作和水稻-小麦轮作。玉米-小麦与大豆-小麦轮作种子库的物种组成相似性较高。作物轮作影响杂草种子库密度和种类组成的机制,可能在于通过轮换种植不同的作物,提供了多样化的选择压,限制了某些对单一种植系统有着良好适应性的杂草种类的生长。     

Monitoring fish passes using infrared beaming: a case study in an Iberian river

An application of a new automated fish counting device – the Riverwatcher System (RW) – was used to monitor upstream fish movements in a pool‐and‐weir fish pass in the River Zêzere, Portugal, for 141 days from June 2002 to May 2003. Fish populations were also collected downstream using multimesh gillnets (5 different mesh sizes ranging from 30 mm to 85 mm knot to knot; ratio between mesh sizes of about 1.30) and electrofishing for comparison with fish records produced by the RW. More than 3000 individual Iberian nase Chondrostoma polylepis ascended the fish pass and moved through the RW during the study period. However, only 18% of the records produced by the RW contained silhouettes similar to fish; no individual smaller than 15 cm TL was recorded by the counter. Most seasonal movements (73.9%) occurred in spring and were associated with reproduction. Displacements seemed to occur independently of time of day. Water temperature (range: 12–22°C) was the only significant environmental variable (P < 0.01) influencing upstream movements of this species. Further development of hardware and software will be necessary to improve performance of the counter, particularly in Mediterranean rivers, where more turbid waters and a greater proportion of small‐size species are present.     

Ring width and vessel features of the mangrove Excoecaria agallocha L. depend on salinity in the Sundarbans,Bangladesh

The Bangladesh Sundarbans is the largest continuous mangrove in the world that providing crucial environmental services, particularly related to coastal protection and livelihoods of millions of people. However, anthropogenic disturbances, diseases infestation and environmental changes including sea level rise (SLR) and fresh-water flux into the delta are threatening the Sundarbans and other mangrove ecosystems worldwide. Protection of mangrove ecosystems requires knowledge on factors that mainly drive growth and vitality of tree species to evaluate which consequences can be expected from, mainly hydrology-related, environmental changes. In this study, we assessed the nature and periodicity of tree rings in Excoecaria agallocha, a wide spread mangrove species in the Bangladesh Sundarbans. We also analysed the influence of climatic factors, such as precipitation, temperature and vapor pressure deficit (VPD), and river discharge, as a proxy of salinity on ring width (RW) and vessel features, such as mean vessel area (MVA) and mean vessel density (MVD). E. agallocha forms distinct tree-ring boundary that characterized by a narrow (2–4 cells wide) band of radially flattened fibres. The RW as well as the MVA and MVD are crossdatable. The RW is mainly driven by salinity which is influenced by freshwater inputs through precipitation during monsoon along with river discharge January to April. The MVA and MVD responded to similar seasons and months as RW, but mostly with opposite signs in MVD. The results suggest that fresh water inputs through precipitation and river discharge positively influence the radial growth of E. agallocha in the Sundarbans. The RW and vessel features can be used as proxies to explore the growth dynamics of this species, especially in relation to global environmental changes.     

Palaeoclimate potential of New Zealand Manoao colensoi (silver pine) tree rings using Blue-Intensity (BI)

This study investigates if Blue Intensity (BI) parameters are capable of capturing enhanced climatic signals from a key New Zealand dendrochronological species when compared to ring-width (RW) measurements. Three BI parameters (earlywood mean, latewood mean and maximum latewood) recorded generally superior correlations to temperature than conventional RW measurements and these correlations appeared more stable over time. For all BI parameters, austral summer (Dec-Feb) was identified as the strongest reconstructive window. However, all the BI parameters required greater sample replication than RW to reach widely accepted thresholds of chronology reliability, highlighting the need for further examination into the physiological controls on the BI signal. Despite the need for further research, this pilot study is strongly encouraging for the wider application of BI in Southern Hemisphere dendrochronology.     

Stability of mutations in a Sphingomonas strain.

Sphingomonas sp. strain RW1 is able to mineralise dibenzofuran and dibenzo-p-dioxin. Three mutants were constructed that could not use dibenzofuran or dibenzo-p-dioxin as a carbon source but were able to grow with the succeeding metabolites of the pathway. Two different mutagenic agents were applied, a chemical treatment with 1-methyl-3-nitro-1-nitrosoguanidine, resulting in mutants RW1-N6 and RW1-N7, and a biological insertion mutagenesis with the mini-Tn5 transposon pBSL118, resulting in mutant RW1-M3. Southern blot analysis and PCR experiments confirmed a single insertion of the mini-Tn5 into one of the genes coding for the oxygenase component of the dibenzofuran 4,4a-dioxygenase system. The genetic stability of these mutants was examined after growth with complex medium under nonselective conditions. All three mutants failed to revert to wild-type metabolic functions.     

Red wine decreases asymmetric dimethylarginine via SIRT1 induction in human endothelial cells

To investigate the effect of three red wines (RWs) from different growing areas and made from different grapes on asymmetric dimethylarginine (ADMA), an endogenous inhibitor of nitric oxide synthase, in young and senescent human endothelial cells (ECs). All RWs decreased ADMA levels, but 2-fold concentration of German RW was necessary to reach the same effect on ADMA compared to Italian RW and French RW without affecting the cell viability and morphology. The ADMA-lowering effect of RW was increased in senescent compared to young cells, accompanied by enhanced activity of the metabolizing enzyme: dimethylarginine dimethylaminohydrolase (DDAH) II, whereas the same amount in the upregulated protein expression of DDAH II and the downregulated protein expression of the synthesizing enzyme: protein arginine methyltransferase 1 was revealed. These effects were associated with decreased 8-iso-prostaglandin F_2α and peroxynitrite formation, enhanced protein expression of NAD⁺-dependent class III histone deacetylase sirtuin (SIRT) 1, and downregulated protein expression of histone senescence factor p53. Blockade of SIRT1 activity abolished the effect of red wine on ADMA. These data are the first demonstration that RW by activating SIRT1 impairs synthesis and increases metabolism of ADMA. This effect of RW is accentuated in senescent cells probably due to enhanced DDAH activity.     

Intestinal uptake of MPP+ is differently affected by red and white wine

It is becoming increasingly evident that ingested products, such as wine, may have profound effects on the therapeutic efficacy of certain drugs. As various xeno- and endobiotics are organic cations, the purpose of our study was to examine the modulation of organic cations intestinal apical uptake by red (RW) and white wine (WW). For this purpose, we used RW, WW, the same alcohol-free wines, phenolic compounds and ethanol. The uptake of the organic cation 1-methyl-4-phenylpyridinium (MPP+) was evaluated in Caco-2 cells, an intestinal epithelial cell model. RW and alcohol-free RW increased 3H-MPP+ apical uptake, although the effect of alcohol-free RW was less pronounced. On the other hand, WW and alcohol-free WW decreased the organic cation uptake but the effect of alcohol-free WW was more pronounced. Our results show that the total content in phenolic compounds was 7 times higher, and the dialysis index was about 4 times higher in RW compared to WW. Ethanol, in the same concentration found in wine, caused a significant decrease in 3H-MPP+ apical uptake. The solution containing high molecular weight compounds from dialyzed RW increased 3H-MPP+ apical uptake. In conclusion, the results suggest that RW may increase and WW may reduce the intestinal absorption of organic cations present in the diet, such as drugs or vitamins (e.g. thiamine and riboflavin). As ethanol alone decreased the uptake of MPP+, and alcohol-free RW and WW had a lower potency than intact wine upon the transport, the presence of ethanol is probably important for the solubilisation/bioavailability of the components endowed with the transport modulating activity.     

The group delay and suppression pattern of the cochlear microphonic potential recorded at the round window

Background

It is commonly assumed that the cochlear microphonic potential (CM) recorded from the round window (RW) is generated at the cochlear base. Based on this assumption, the low-frequency RW CM has been measured for evaluating the integrity of mechanoelectrical transduction of outer hair cells at the cochlear base and for studying sound propagation inside the cochlea. However, the group delay and the origin of the low-frequency RW CM have not been demonstrated experimentally.

Methodology/Principal Findings

This study quantified the intra-cochlear group delay of the RW CM by measuring RW CM and vibrations at the stapes and basilar membrane in gerbils. At low sound levels, the RW CM showed a significant group delay and a nonlinear growth at frequencies below 2 kHz. However, at high sound levels or at frequencies above 2 kHz, the RW CM magnitude increased proportionally with sound pressure, and the CM phase in respect to the stapes showed no significant group delay. After the local application of tetrodotoxin the RW CM below 2 kHz became linear and showed a negligible group delay. In contrast to RW CM phase, the BM vibration measured at location ∼2.5 mm from the base showed high sensitivity, sharp tuning, and nonlinearity with a frequency-dependent group delay. At low or intermediate sound levels, low-frequency RW CMs were suppressed by an additional tone near the probe-tone frequency while, at high sound levels, they were partially suppressed only at high frequencies.

Conclusions/Significance

We conclude that the group delay of the RW CM provides no temporal information on the wave propagation inside the cochlea, and that significant group delay of low-frequency CMs results from the auditory nerve neurophonic potential. Suppression data demonstrate that the generation site of the low-frequency RW CM shifts from apex to base as the probe-tone level increases.     

Quantitative PCR for tracking the megaplasmid-borne biodegradation potential of a model sphingomonad

We developed a quantitative PCR method for tracking the dxnA1 gene, the initial, megaplasmid-borne gene in Sphingomonas wittichii RW1's dibenzo-p-dioxin degradation pathway. We used this method on complex environmental samples and report on growth of S. wittichii RW1 in landfill leachate, thus furnishing a novel tool for monitoring megaplasmid-borne, dioxygenase-encoding genes.     

Mutations in a dominant-negative isoform correlate with phenotype in inherited cardiac arrhythmias

The long QT syndrome is characterized by prolonged cardiac repolarization and a high risk of sudden death. Mutations in the KCNQ1 gene, which encodes the cardiac KvLQT1 potassium ion (K+) channel, cause both the autosomal dominant Romano-Ward (RW) syndrome and the recessive Jervell and Lange-Nielsen (JLN) syndrome. JLN presents with cardiac arrhythmias and congenital deafness, and heterozygous carriers of JLN mutations exhibit a very mild cardiac phenotype. Despite the phenotypic differences between heterozygotes with RW and those with JLN mutations, both classes of variant protein fail to produce K+ currents in cultured cells. We have shown that an N-terminus-truncated KvLQT1 isoform endogenously expressed in the human heart exerts strong dominant-negative effects on the full-length KvLQT1 protein. Because RW and JLN mutations concern both truncated and full-length KvLQT1 isoforms, we investigated whether RW or JLN mutations would have different impacts on the dominant-negative properties of the truncated KvLQT1 splice variant. In a mammalian expression system, we found that JLN, but not RW, mutations suppress the dominant-negative effects of the truncated KvLQT1. Thus, in JLN heterozygous carriers, the full-length KvLQT1 protein encoded by the unaffected allele should not be subject to the negative influence of the mutated truncated isoform, leaving some cardiac K+ current available for repolarization. This is the first report of a genetic disease in which the impact of a mutation on a dominant-negative isoform correlates with the phenotype.     

Different combinations of morpho‐physiological traits are responsible for tolerance to drought in wild tomatoes Solanum chilense and Solanum peruvianum

Herbaceous species can modify leaf structure during the growing season in response to drought stress and water loss. Evolution can select combinations of traits in plants for efficient water use in restricted environments. We investigated plant traits that mediate adaptation and acclimation to water stress in two herbaceous drought‐tolerant species. Anatomical, morphological and physiological traits related to stems and leaves were examined under optimal watering (OW) and a long period of restricted watering (RW) in 11 accessions from three Solanaceae species (Solanum chilense, S. peruvianum and S. lycopersicum). The relationships between these traits were tested using linear regression and PCA. There were significant differences in anatomical traits between the species under both OW and RW, where leaf area correlated with stem diameter. Proline and total carbohydrates accumulated highly in S. chilense and S. peruvianum, respectively, and these osmolytes were strongly correlated with increased osmotic potential. Stomatal density varied between species but not between acclimation treatments, while stomatal rate was significantly higher in wild tomatoes. There was a strong positive relationship between stem growth rate and a group of traits together expressed as total stomatal number. Total stomata is described by integration of leaf area, stomatal density, height and internode length. It is proposed that constitutive adaptations and modifications through acclimation that mediate RW play an important role in tolerance to drought stress in herbaceous plants. The capacity for growth under drought stress was not associated with any single combination of traits in wild tomatoes, since the two species differed in relative levels of expression of various phenotypic traits.     

Revisiting the quantitative trait loci for milk production traits on BTA6

A parallel association study was performed in two independent cattle populations based on 41 validated, targeted single nucleotide polymorphisms (SNPs) and four microsatellite markers to re-evaluate the multiple quantitative trait loci (QTL) architecture for milk performance on bovine chromosome 6 (BTA6). Two distinct QTL located in the vicinity of the middle region of BTA6, but differing unambiguously regarding their effects on milk composition and yield traits were validated in the German Holstein population. A highly significant association of the protein variant ABCG2 p.Tyr581Ser with milk composition traits reconfirmed the causative molecular relevance of the ABCG2 gene in QTL region 1, whereas in QTL region 2, significant and tentative associations between gene variants RW070 and RW023 (located in the promoter region and exon 9 of the PPARGC1A gene for milk yield traits) were detected. For the German Fleckvieh population, only RW023 showed a tentative association with milk yield traits, whereas those loci with significant effects in German Holsteins (ABCG2 p.Tyr581Ser, RW070) showed fixed alleles. Even though our new data highlight two variants in the PPARGC1A gene (RW023, RW070) in QTL region 2, based on the results of our study, currently no unequivocal conclusion about the causal background of this QTL affecting milk yield traits can be drawn. Notably, the German Holstein and Fleckvieh populations, known for their divergent degree of dairy type, differ substantially in their allele frequencies for the growth-associated NCAPG p.Ile442Met locus.