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1.
由于外源化合物能诱导鱼类CYPIA(P4501A)的表达,因而它广泛被用作评价水环境污染生物标记物.利用RT-PCR结合RACE技术从大黄鱼(Larimichthys crocea)肝脏克隆了CYP1A基因全长cDNA序列.经分析,该cDNA的5'末端有175 bp的非翻译区.开放阅读框为1 566 bp,编码521个氨基酸和一个终止密码子,3'末端有857 bp的非翻译区,3'非翻译区有一个多聚腺苷酸信号及两个与mRNA的快速降解有关的AUUUA序列.推测大黄鱼CYP1A的氨基酸序列和欧洲鲈鱼的相似度最高迭89.6%.用RT-PCR检测大黄鱼CYP1A的表达特征发现,在所检测的9个组织中均有表达,以肝脏、消化道、脾脏和肾脏的表达量较高.  相似文献   

2.
采用RT-PCR技术从草鱼肝脏中克隆了成纤维细胞生长21(FGF21)基因序列,并利用实时荧光定量PCR(q PCR)技术对该基因在草鱼幼鱼不同组织中表达进行了研究。结果表明,草鱼FGF21基因(Gen Bank登录号为MF_094727)c DNA序列全长615 bp,其中5'端非翻译区51 bp,开放阅读框564 bp,编码187个氨基酸。氨基酸序列同源性分析表明,草鱼FGF21基因与斑马鱼同源性最高(78.86%),与犀角金线鲃、鲤、虹鳟、大西洋鲑、罗非鱼和日本青鱂的同源性分别为77.66%、73.94%、53.29%、52.41%、43.71%和35.96%,与人和小鼠同源性较低,分别为31.87%和30.39%。q PCR分析表明:FGF21基因在草鱼幼鱼肝脏、前肠、中肠、后肠、心脏、肌肉、肾脏和全脑中均有表达,在肌肉、前肠和中肠表达量最高,表明该基因可能在草鱼肌肉和肠道等组织发挥重要作用。  相似文献   

3.
Qian YX  Song JJ 《动物学研究》2011,32(3):277-284
甜菜碱高半胱氨酸甲基转移酶(BHMT,EC2.1.1.5)催化甜菜碱的甲基转移给高半胱氨酸(Hcy),而分别生成二甲基甘氨酸和蛋氨酸。利用RT-PCR和SMART RACE的方法从鲈鱼(Lateolabrax japonicus)肝脏中克隆了BHMT全长cDNA。该序列全长1461bp,5'端非翻译区72bp,3'端非翻译区183bp,开放阅读框1206bp,可编码一个由401个氨基酸组成的蛋白质,该蛋白质相对分子质量为44.32kD,等电点为7.21。氨基酸序列分析表明,BHMT具有较高的保守性,鲈鱼BHMT与人、小鼠等9个物种的同源性为77%~93%,其中与黄鲈(Percaflavescens)同源性最高,为93%。用RT-PCR分析BHMT基因在10个组织中的表达结果表明,只有在肝、肠和肾中有较高的表达。RT-PCR和定量PCR表明,鲈鱼从盐度25的海水转入盐度12的海水后,肝、肠和肾BHMT基因表达量有增加,而将鲈鱼从盐度为25的海水转入盐度为29的海水后,肝、肠和肾的BHMT基因表达则减少。腹腔注射甜菜碱可增加鲈鱼BHMT基因在肝、肠和肾三个组织中的相对表达量。这些结果表明,甜菜碱可诱导鲈鱼BHMT...  相似文献   

4.
旨在探讨三疣梭子蟹高度不饱和脂肪酸自身合成能力,探究三疣梭子蟹HUFA生物合成途径。采用cDNA末端快速扩增(RACE)技术克隆得到三疣梭子蟹△6去饱和酶cDNA全长序列,并利用荧光定量PCR技术进行肝胰腺、肠道、鳃等8种组织的表达分析。通过分析序列表明,基因序列全长2875bp,其中5'非编码区长465bp,3'非编码区长1078bp,开放阅读框(ORF)长1332bp,编码443个氨基酸;并且编码的蛋白序列具有典型的去饱和酶特性:3个组氨酸保守区,一个N端细胞色素b5结构域以及一个血红素结合的HPGG结构域。荧光定量PCR结果显示,Δ6脂肪酸去饱和酶基因在三疣梭子蟹多个组织中均有表达,在肝胰腺中表达量最高,其次是肠道和肌肉,心脏中表达最少。结果表明三疣梭子蟹具有△6去饱和酶。  相似文献   

5.
低盐度可诱导鲈鱼胞浆型PEPCK基因表达   总被引:2,自引:0,他引:2  
磷酸烯醇式丙酮酸羧激酶(PEPCK)催化草酰乙酸生成磷酸烯醇式丙酮酸,是糖异生途径的第1个限速酶.本研究用SMARTRACE技术从鲈鱼肝脏中分离克隆了PEPCK基因的全长cDNA序列.该基因全长2215bp,包含1个123bp的5′非翻译区和217bp的3′非翻译区,开放阅读框为1875bp,编码1个由624个氨基酸组成的蛋白质,该蛋白理论分子量为69.1kD,等电点为5.87.氨基酸序列分析表明,与其它动物的胞浆型PEPCK相似性很高,与黑鲷为94.2%,与大西洋鲑为86.4%,与人为75.9%,而与该鱼线粒体型PEPCK氨基酸同源性只有70.6%.系统发育分析显示,该蛋白首先与其它动物的cPEPCK聚成一支,然后再与鱼类的mPEPCK成簇,认为该PEPCK属于胞浆型.同时用RT-PCR分析了PEPCK基因在10个组织中的表达,结果表明只有在肝脏、消化道和肾脏有较高的表达.将鲈鱼从盐度为25的海水转入盐度为12的海水48h后,肝脏和肾脏的PEPCK基因表达有增加.实验结果表明,本实验克隆的为鲈鱼胞浆型PEPCK,低盐度可诱导其表达.  相似文献   

6.
为了研究肽聚糖识别蛋白家族(Peptidoglycan recognition proteins, PGRPs)在黄颡鱼(Pelteobagrusfulvidraco)先天免疫应答中发挥的作用, 根据NCBI中斑马鱼(Danio rerio) 和虹鳟(Oncorhynchus mykiss) PGRP-L的基因信息, 采用简并引物和RACE方法从黄颡鱼肝脏中克隆得到了一个长型PGRP (PfPGRP-L)基因. PfPGRP-L基因的全长cDNA序列大小为1617 bp, 其中5'和3'非翻译区的长度分别为135和72 bp, 开放阅读框为1410 bp, 编码469个氨基酸. 同源性和系统进化分析表明, 黄颡鱼PGRP-L与虹鳟的同源性为60%, 与脊椎动物的PGLYRP2 或PGRP-L聚在一起. 半定量RT-PCR分析发现PfPGRP-L基因在黄颡鱼鳃、胸腺、肝脏、脾脏、肠道、肾脏、头肾、心脏、血液和肌肉组织中均有分布, 但在肠道和脾脏中的表达量较为丰富, 而在肌肉和血液中表达则很少. 用爱德华氏菌刺激后, PfPGRP-L在肝脏、脾脏、肠道及头肾中的表达明显上调. 结果表明, PfPGRP-L在黄颡鱼抵抗病原菌中具有重要作用.  相似文献   

7.
猪CuZnSOD基因的克隆、表达及功能分析   总被引:2,自引:0,他引:2  
Du JF  Zeng YQ  Chen W  Cui JX  Chen QM  Yang L  Hu YX 《遗传》2010,32(10):1037-1042
为了进一步了解和认识CuZnSOD基因的结构和功能,揭示CuZnSOD对猪抗氧化机能的影响,寻找与肉质性状相关联的分子标记,文章采用RACE(Rapid amplification of cDNA end)方法,对莱芜猪CuZnSOD基因cDNA进行克隆测序,分析其结构和功能,并用Real-timePCR检测CuZnSOD基因的表达.结果表明,CuZnSOD基因cDNA序列全长658 bp(GenBank登录号:GU944822),包含76 bp的5'UTR和120 bp的3'UTR序列.全部CDS序列462 bp,编码153个氨基酸,分子量为15.9 kDa,等电点为6.03.CuZnSOD基因编码的氨基酸序列中,第3氨基酸残基处存在1个O-糖基化位点,第86氨基酸残基处存在1个N-糖基化位点.二级结构中α螺旋仅占1.31%.在进化过程中高度保守,与人、牛、小鼠和褐鼠的编码区同源性分别为87.74%、87.66%、83.44%和83.23%;氨基酸序列同源性分别为90.26%、94.12%、92.21%和91.50%.CuZnSOD存在典型的金属结合配体结构域(GFHVHQFGDNT).基于蛋白序列所构建的分子进化树表明猪与牛的亲缘关系最近.在mRNA水平上,CuZnSOD是一个广谱表达基因,在大脑、心脏、脾脏、肝脏、肾脏、肺、大肠、小肠、脊髓,肌肉、背膘和胃中都能检测到,其在肾脏,小肠和肺中表达量较高,在心脏和肌肉组织中表达量较低.  相似文献   

8.
大头金蝇酰基辅酶AΔ9去饱和酶cDNA克隆与原核表达   总被引:1,自引:0,他引:1       下载免费PDF全文
为深入研究大头金蝇Chrysomya megacephala (Fabricius)脂肪酸代谢关键功能基因酰基辅酶AΔ9去饱和酶(ACD9des),运用RT-PCR和RACE技术,获得其cDNA全长序列,并对其进行生物信息学分析。大头金蝇ACD9des基因cDNA (GenBank登录号为KF835695)全长1 429 bp,其中开放阅读框(ORF)为1 146 bp,编码381个氨基酸,5'UTR长度为138 bp,3'UTR约为114 bp。ORF编码的蛋白质分子量为43. 47 kD,等电点9. 06,氨基酸序列与其他昆虫酰基辅酶A去饱和酶一致性高达66%-93%,且含有由7个酰基辅酶A去饱和酶蛋白家族特有的保守模式(motif)所构成的指纹(IPR015876)。大头金蝇ACD9des在进化上与葱蝇Delia antiqua最趋于一致。将ACD9des的ORF克隆到原核表达载体p ET-44a(+),并利用Rosetta (DE3)感受态细胞进行ACD9des原核表达。Western Blot分析表明,IPTG诱导表达的特异性蛋白可以与anti-His抗体特异性结合,大小与预期理论值(43. 47 kDa)相符,为ACD9des。该蛋白主要存在于上清溶液中,为可溶性表达。最后利用含250 mM咪唑洗脱液和镍离子亲和层析柱对扩大培养获得的重组蛋白进行了纯化收集。本文的研究结果为大头金蝇功能基因的深入研究提供了坚实的基础。  相似文献   

9.
研究旨在克隆大黄鱼磷脂酰胆碱合成关键基因磷脂酰胆碱胞苷转移酶 (CCT)基因全长, 并检测其表达量随稚鱼生长发育的变化。利用同源克隆技术和RACE技术从大黄鱼肝脏中成功扩增出CCT的全长。同时应用real-time PCR法检测不同日龄大黄鱼稚鱼CCT的表达变化。序列分析表明, CCT全长2419 bp(Genbank登录号: KF006239.1), 包括273 bp 的5'端非编码区, 1107 bp的开放阅读框, 1010 bp的3'端非编码区,共编码369个氨基酸。系统进化树分析表明, 相比其他物种, 大黄鱼CCT基因与红鳍东方鲀的亲缘关系较近。定量结果表明, 孵化后, 大黄鱼仔稚鱼CCT的表达量随日龄的变化先显著升高, 在15日龄时达到最大值,随后显著下降并趋于平稳, CCT基因表达量的变化趋势与大黄鱼稚鱼消化系统的发育密切相关。  相似文献   

10.
血管内皮生长因子A (vascular endothelial growth factor A, VEGFA)主要生理功能是增加小静脉血管与微血管的通透性,是血管生成过程最重要的正向调控因子。本研究采用RACE技术克隆布氏鲳鲹VEGFA基因和实时荧光定量PCR方法对该基因进行组织分布表达分析。结果显示,该VEGFA基因cDNA序列全长1 470 bp,5’UTR、3’UTR长度分别为617 bp和208 bp,ORF为645 bp,共编码214个氨基酸,其中包括一个信号肽和两个N-糖基化位点。理论分子量为25.23 kD,等电点为8.91。同源性分析结果表明,布氏鲳鲹VEGFA基因与同属鲈形目鱼类高体鰤的同源性最高(96.1%)。荧光定量PCR分析显示,VEGFA在布氏鲳鲹组织中均有表达,其中肝脏表达水平最高,其次是心脏,在小脑、胃、肠表达较低,在肾脏组织中的表达量最低,说明布氏鲳鲹VEGFA基因在生理代谢以及血管生成过程中可能发挥重要调节作用。本研究结果为深入研究布氏鲳鲹VEGFA基因的生理代谢调控功能提供理论依据。  相似文献   

11.
In Arabidopsis thaliana, acyl-CoA-binding protein 3 (?ACBP3), one of six ACBPs, is unique in terms of the C-terminal location of its acyl-CoA-binding domain. It promotes autophagy-mediated leaf senescence and confers resistance to Pseudomonas syringae pv. tomato DC3000. To understand the regulation of ACBP3, a 1.7 kb 5'-flanking region of ACBP3 and its deletion derivatives were characterized using β-glucuronidase (GUS) fusions. A 374 bp minimal fragment (-151/+223) could drive GUS expression while a 1698 bp fragment (-1475/+223) conferred maximal activity. Further, histochemical analysis on transgenic Arabidopsis harbouring the largest (1698 bp) ACBP3pro::GUS fusion displayed ubiquitous expression in floral organs and vegetative tissues (vascular bundles of leaves and stems), consistent with previous results showing that extracellularly localized ACBP3 functions in plant defence. A 160 bp region (-434/-274) induced expression in extended darkness and caused down-regulation in extended light. Electrophoretic mobility shift assay (EMSA) and DNase I footprinting assay showed that the DNA-binding with one finger box (Dof-box, -341/-338) interacted specifically with leaf nuclear proteins from dark-treated Arabidopsis, while GT-1 (-406/-401) binds both dark- and light-treated Arabidopsis, suggesting that Dof and GT-1 motifs are required to mediate circadian regulation of ACBP3. Moreover, GUS staining and fluorometric measurements revealed that a 109 bp region (-543/-434) was responsive to phytohormones and pathogens. An S-box of AT-rich sequence (-516/-512) was identified to bind nuclear proteins from pathogen-infected Arabidopsis leaves, providing the basis for pathogen-inducible regulation of ACBP3 expression. Thus, three cis-responsive elements (Dof, GT-1, and the S-box) in the 5'-flanking region of ACBP3 are proven functional in the regulation of ACBP3.  相似文献   

12.
In Arabidopsis thaliana , a family of six genes encodes acyl-CoA-binding proteins (ACBPs) that show conservation at the acyl-CoA-binding domain. They are the membrane-associated ACBP1 and ACBP2, extracellularly targeted ACBP3, kelch-motif-containing ACBP4 and ACBP5, and 10-kDa ACBP6. The acyl-CoA domain in each of ACBP1 to ACBP6 binds long-chain acyl-CoA esters in vitro , suggestive of possible roles in plant lipid metabolism. We addressed here the use of Arabidopsis ACBPs in conferring lead [Pb(II)] tolerance in transgenic plants because the 10-kDa human ACBP has been identified as a molecular target for Pb(II) in vivo . We investigated the effect of Pb(II) stress on the expression of genes encoding Arabidopsis ACBP1, ACBP2 and ACBP6. We showed that the expression of ACBP1 and ACBP2 , but not ACBP6 , in root is induced by Pb(II) nitrate treatment. In vitro Pb(II)-binding assays indicated that ACBP1 binds Pb(II) comparatively better, and ACBP1 was therefore selected for further investigations. When grown on Pb(II)-containing medium, transgenic Arabidopsis lines overexpressing ACBP1 were more tolerant to Pb(II)-induced stress than the wild type. Accumulation of Pb(II) in shoots of the ACBP1 -overepxressing plants was significantly higher than wild type. The acbp1 mutant showed enhanced sensitivity to Pb(II) when germinated and grown in the presence of Pb(II) nitrate and tolerance was restored upon complementation using an ACBP1 cDNA. Our results suggest that ACBP1 is involved in mediating Pb(II) tolerance in Arabidopsis with accumulation of Pb(II) in shoots. Such observations of Pb(II) accumulation, rather than Pb(II) extrusion, in the ACBP1 -overexpressing plants implicate possible use of ACBP1 in Pb(II) phytoremediation.  相似文献   

13.
利用电子克隆的方法寻找具有重要结构域的人类新基因ACBP5 ,根据得到的序列信息用RT PCR的方法获得全长基因 .通过生物信息学方法预测其结构 ,采用整体原位杂交和组织RT PCR的实验方法 ,在小鼠和鸡胚胎实验模型中研究该基因在发育过程中的表达情况 ,并对其功能进行初步的预测 ,获得一个含有乙酰辅酶A结合蛋白 (acyl CoAbindingprotein ,ACBP)结构域的人类新基因ACBP5 .ACBP5基因的cDNA长度为 10 83bp ,生物信息学方法预测其定位在人第 1号染色体上 ,包含 7个外显子 ,6个内含子 ,包含一个 35 4bp的完整阅读框架 ,编码一个 118个氨基酸残基的蛋白 .在以小鼠胚胎和鸡胚为模型的整体原位杂交中 ,以ACBP5基因全长编码区为探针的结果均显示该基因在胚胎头部特异表达 ,并且主要集中在中脑与间脑之间的峡部 .成体小鼠的组织RT PCR的结果显示 ,ACBP5的同源基因在各组织中均有表达 .这提示ACBP5基因在不同物种中的表达可能比较保守 ,并与头部发育有密切关系 ,同时也对维持细胞的正常功能起到重要的作用 .  相似文献   

14.
15.
16.
Six genes encode proteins with acyl-CoA-binding domains in Arabidopsis thaliana. They are the small 10-kDa cytosolic acyl-CoA-binding protein (ACBP), membrane-associated ACBP1 and ACBP2, extracellularly-targeted ACBP3, and kelch-motif containing ACBP4 and ACBP5. Here, the interaction of ACBP4 with an A. thaliana ethylene-responsive element binding protein (AtEBP), identified in a yeast two-hybrid screen, was confirmed by co-immunoprecipitation. The subcellular localization of ACBP4 and AtEBP, was addressed using an ACBP4:DsRed red fluorescent protein fusion and a green fluorescent protein (GFP):AtEBP fusion. Transient expression of these autofluoresence-tagged proteins in agroinfiltrated tobacco leaves, followed by confocal laser scanning microscopy, indicated their co-localization predominantly at the cytosol which was confirmed by FRET analysis. Immuno-electron microscopy on Arabidopsis sections not only localized ACBP4 to the cytosol but also to the periphery of the nucleus upon closer examination, perhaps as a result of its interaction with AtEBP. Furthermore, the expression of ACBP4 and AtEBP in Northern blot analyses was induced by the ethylene precursor 1-aminocyclopropane-1-carboxylic acid, methyl jasmonate treatments, and Botrytis cinerea infection, suggesting that the interaction of ACBP4 and AtEBP may be related to AtEBP-mediated defence possibly via ethylene and/or jasmonate signalling.  相似文献   

17.
Membrane localization of Arabidopsis acyl-CoA binding protein ACBP2   总被引:3,自引:0,他引:3  
Cytosolic acyl-CoA binding proteins bind long-chain acyl-CoAs and act as intracellular acyl-CoA transporters and pool formers. Recently, we have characterized Arabidopsis thaliana cDNAs encoding novel forms of ACBP, designated ACBP1 and ACBP2, that contain a hydrophobic domain at the N-terminus and show conservation at the acyl-CoA binding domain to cytosolic ACBPs. We have previously demonstrated that ACBP1 is membrane-associated in Arabidopsis. Here, western blot analysis of anti-ACBP2 antibodies on A. thaliana protein showed that ACBP2 is located in the microsome-containing membrane fraction and in the subcellular fraction containing large particles (mitochondria, chloroplasts and peroxisomes), resembling the subcellular localization of ACBP1. To further investigate the subcellular localization of ACBP2, we fused ACBP2 translationally in-frame to GFP. By means of particle gene bombardment, ACBP2-GFP and ACBP1-GFP fusion proteins were observed transiently expressed at the plasma membrane and at the endoplasmic reticulum in onion epidermal cells. GFP fusions with deletion derivatives of ACBP1 or ACBP2 lacking the transmembrane domain were impaired in membrane targeting. Our investigations also showed that when the transmembrane domain of ACBP1 or that of ACBP2 was fused with GFP, the fusion protein was targeted to the plasma membrane, thereby establishing their role in membrane targeting. The localization of ACBP1-GFP is consistent with our previous observations using immunoelectron microscopy whereby ACBP1 was localized to the plasma membrane and vesicles. We conclude that ACBP2, like ACBP1, is a membrane protein that likely functions in membrane-associated acyl-CoA transfer/metabolism.  相似文献   

18.
Chen QF  Xiao S  Chye ML 《Plant physiology》2008,148(1):304-315
Small 10-kD acyl-coenzyme A-binding proteins (ACBPs) are highly conserved proteins that are prevalent in eukaryotes. In Arabidopsis (Arabidopsis thaliana), other than the 10-kD ACBP homolog (designated Arabidopsis ACBP6), there are five larger forms of ACBPs ranging from 37.5 to 73.1 kD. In this study, the cytosolic subcellular localization of Arabidopsis ACBP6 was confirmed by analyses of transgenic Arabidopsis expressing autofluorescence-tagged ACBP6 and western-blot analysis of subcellular fractions using ACBP6-specific antibodies. The expression of Arabidopsis ACBP6 was noticeably induced at 48 h after 4 degrees C treatment by northern-blot analysis and western-blot analysis. Furthermore, an acbp6 T-DNA insertional mutant that lacked ACBP6 mRNA and protein displayed increased sensitivity to freezing temperature (-8 degrees C), while ACBP6-overexpressing transgenic Arabidopsis plants were conferred enhanced freezing tolerance. Northern-blot analysis indicated that ACBP6-associated freezing tolerance was not dependent on the induction of cold-regulated COLD-RESPONSIVE gene expression. Instead, ACBP6 overexpressors showed increased expression of mRNA encoding phospholipase Ddelta. Lipid profiling analyses of rosettes from cold-acclimated, freezing-treated (-8 degrees C) transgenic Arabidopsis plants overexpressing ACBP6 showed a decline in phosphatidylcholine (-36% and -46%) and an elevation of phosphatidic acid (73% and 67%) in comparison with wild-type plants. From our comparison, the gain in freezing tolerance in ACBP6 overexpressors that was accompanied by decreases in phosphatidylcholine and an accumulation of phosphatidic acid is consistent with previous findings on phospholipase Ddelta-overexpressing transgenic Arabidopsis. In vitro filter-binding assays indicating that histidine-tagged ACBP6 binds phosphatidylcholine, but not phosphatidic acid or lysophosphatidylcholine, further imply a role for ACBP6 in phospholipid metabolism in Arabidopsis, including the possibility of ACBP6 in the cytosolic trafficking of phosphatidylcholine.  相似文献   

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The diazepam binding inhibitor (DBI) or the acyl-CoA-binding protein (ACBP) is a 9-10 kDa highly conserved multifunctional protein that plays important roles in GABA(A) receptor activity regulation, lipid absorption and steroidogenesis in various organisms. To study the functions of DBI/ACBP in insect development or diapause, we cloned the cDNA from Helicoverpa armigera (Har) utilizing rapid amplification of cDNA ends (RACE). By homology search, Har-DBI/ACBP is conserved with the DBI/ACBPs known from other insects. Northern blot analysis showed that DBI/ACBP gene expressed in nonneural and neural tissues. RT-PCR combined Southern blot analysis revealed that DBI/ACBP mRNA in the brain of nondiapause individual was much higher than that in the brain of diapausing insects. At early and middle stages of 6th instar larvae, the level of DBI/ACBP mRNA was higher in the midgut of diapause type than that in nondiapause type and low at late 6th instar larval stage and early pupal stage in both types. In the prothoracic gland (PG), DBI/ACBP expression appeared at a high level at middle and late stages of 6th larval instar in both nondiapause and diapause types, and declined after pupation. In vitro experiments revealed that DBI/ACBP mRNA in PG could be stimulated by synthetic H. armigera diapause hormone (Har-DH), suggesting that Har-DH may stimulate the PG to produce ecdysteroids by the DBI/ACBP signal pathway. By in vitro assay, we also found that FGIN-1-27, which has similar functions to DBI/ACBP in ecdysteroidogenesis, could induce PG ecdysteroidogenesis effectively, suggesting that DBI/ACBP regulates biosynthesis of ecdysteroids in PG. Thus, DBI/ACBP indeed plays a key role in metabolism and development in H. armigera.  相似文献   

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