Anaerobic denitrification in fungi from the coastal marine sediments off Goa, India

Denitrification is a microbial process during which nitrate or nitrite is reduced under anaerobic condition to gaseous nitrogen. The Arabian Sea contains one of the major pelagic denitrification zones and in addition to this, denitrification also takes places along the continental shelf. Prokaryotic microorganisms were considered to be the only players in this process. However recent studies have shown that higher microeukaryotes such as fungi can also adapt to anaerobic mode of respiration and reduce nitrate to harmful green house gases such as NO and N₂O. In this study we examined the distribution and biomass of fungi in the sediments of the seasonal anoxic region off Goa from two stations. The sampling was carried out in five different periods from October 2005, when dissolved oxygen levels were near zero in bottom waters to March 2006. We isolated mycelial fungi, thraustochytrids and yeasts. Species of Aspergillus and thraustochytrids were dominant. Fungi were isolated under aerobic, as well as anaerobic conditions from different seasons. Four isolates were examined for their denitrification activity. Two cultures obtained from the anoxic sediments showed better growth under anaerobic condition than the other two cultures that were isolated from oxic sediments. Our preliminary results suggest that several species of fungi can grow under oxygen deficient conditions and participate in denitrification processes.     

Microbial characteristics of marine sediments in bathing area along Pesaro-Gabicce coast (Italy): a preliminary study

AIMS: This paper evaluates the presence of human pathogen micro-organisms in marine sediments in a coastal area suitable for bathing. In addition, the grain size analysis was performed in order to correlate the characteristics of the sediments and the microbial content. METHODS AND RESULTS: The samples were collected in two small bays along the central Adriatic coast, where breakwaters had been built for the purpose of halting marine erosion. Faecal contamination indicators, Salmonella and Vibrio species, enteric viruses were investigated using standard techniques for isolation and identification. The grain size was determined using calibrated sieves and 'Sedigraph' device. In some samples, the faecal contamination indices overstepped legislative limits. Salmonella was never found. Vibrio and enteric viruses were isolated: the micro-organisms were preferentially abundant in fine sediments. CONCLUSIONs: Marine sediments can represent an important reservoir of allochthonous and marine micro-organisms and the microbial charge correlates with the characteristics of the sediments. SIGNIFICANCE AND IMPACT OF THE STUDY: This study indicates that it is important to analyse marine sediments before defining the quality of coastal areas.     

A revision of the genus Halectinosoma (Harpacticoida: Ectinosomatidae): a reappraisal of H. sarsi (Boeck) and related species

Ectinosomatid material was examined from extensive collections around the British Isles and from several additional world localities and museum collections, permitting a revision of the genus Halectinosoma. This paper describes 12 morphologically similar species and erects five new species. H. sarsi (Boeck) is regarded as species incertae sedis, while H. sarsi sensu Sars (1904) is redescribed as H. pseudosarsi sp. nov.; H. sarsi sensu T. & A. Scott (1894) is synonymized with H. canaliculatum (Por). H. propinquum is regarded as a junior subjective synonym of H. chrystalli (T. Scott). H. clavatum (Sars) is resurrected, having previously been regarded as a synonym of H. brunneum (Brady). A key for the identification of females belonging to this group of species is provided.     

Meiobenthic distribution and nematode community structure in five European estuaries

Meiofauna from the intertidal zone of five European estuaries (Ems, Westerschelde, Somme, Gironde, Tagus) was investigated. Samples represented a cross section of various benthic habitats from near-freshwater to marine, from pure silts to fine-sandy bottoms. The meiobenthic community comprised everywhere a fauna strongly dominated by nematodes, with meiobenthic density increasing with increasing salinity. The Ems differed from the other estuaries due to the presence of a well developed community of Copepods, Gastrotrichs, large Ciliates and/or soft-shelled Foraminiferans in some sites. The Westerschelde stood out due to the near-absence of harpacticoid copepods and, as in the Tagus, the lower meiobenthic densities in the marine part of the estuary. For nematode community analysis, we also included data from the Tamar which were obtained from the literature (Warwick &; Gee, 1984). This resulted in the enumeration of 220 species, belonging to 102 genera, each with a characteristic distribution along the salinity, sedimentary and latitudinal gradients. Using the multivariate technique CANOCO, a zonation along these different physicochemical determinants was observed as well although salinity and sediment characteristic (scale of hundreds of meters to kilometers) proved to be more important in explaining community structure than latitudinal differences (scale of hundreds of kilometers). Nematode diversity was nearly entirely determined on the genus level and was positively related to salinity. Deviations from this general trend in the Gironde and the Tamar were attributed to sedimentary characteristics or to low macrobenthic predation. The presence of a typical opportunistic colonizing nematode species Pareurodiplogaster pararmatus in the low-salinity region of the Gironde could indicate (organic?) pollution or disturbance of the intertidal mud-flats.     

Studies of the life-history and energetics of marine and brackish-water nematodes

Summary Aspects of the demography of Monhystera disjuncta were investigated at different temperatures (in agnotobiotic cultures) and in different feeding conditions (monoxenic cultures with different bacterial strains, and different densities in the feeding suspension with one strain). Embryonic development time, minimum generation time, egg deposition rate and adult longevity depend on temperature, quality and quantity of food offered. Body mass at maturity is an allometric function of food density. It is shown that a previously inferred selectivity in food uptake is an artifact of culture conditions. pH buffering and addition of sterols permit culture of the species on a wide variety of bacterial strains. M. disjuncta is less well adapted to take advantage of high food density than are nematodes from polysaprobic environments. The animals channel surplus energy intake into a larger body mass, without being able to increase their rate of population growth accordingly.     

The influence of mangrove-derived tannins on intertidal meiobenthos in tropical estuaries

Summary Mangrove-derived tannins negatively effected laboratory-reared nematode populations and natural communities of meiobenthos in tropical mangrove forests along the northeastern coast of Australia. In the low and mid intertidal zones of five mangrove estuaries, nearly all of the dominant meiofaunal taxa correlated negatively with concentrations of sediment tannins. Only nematodes correlated with low tannin concentrations in the high intertidal zones. The negative exponential equation y=be ^-mx represented the best-fit for most of the meiofauna-tannin relationships. The mangrove-dwelling nematode, Terschellingia longicaudata did not grow (r=0.001) in the laboratory on fresh, tannin-rich leaves of the red mangrove, Rhizophora stylosa. Population growth of the nematode was significantly greater on fresh, tannin-poor leaves of the grey mangrove, Avicennia marina (r=0.081) with best growth (r=0.112) attained on a diet of tannin-free, mixed cereal. These preliminary field and laboratory results suggest that hydrolyzable tannins leached from mangrove roots and leaf litter are an important factor regulating intertidal meiobenthic communities in tropical mangrove forests along the northeastern Australian coast.     

Fractionation of metals in the Sa1/2 sediment core from Lake Sarbsko (northern Poland) and its palaeolimnological implications

Abstract

This article documents and interprets stratigraphical changes in fractionation of Fe, Mn, Mg, K, Pb, Cu and Zn in the Sa1/2 sediment core from a coastal freshwater lake, Lake Sarbsko (northern Poland). The elements were sequentially extracted from the samples to distinguish five geochemical fractions: exchangeable, acid-extractable, reducible, oxidisable and residual. The analyses revealed substantial variations in geochemical partitioning of the elements and showed no correlation between the fractionation patterns and lithology of the sediments. In the sediments of Lake Sarbsko, iron is mainly bound to sulfides. Potassium occurs in its residual form. Magnesium and zinc are associated with carbonates and aluminosilicates, while copper occurs in compounds with organic matter and sulfides. Lead is found in connection with aluminosilicates and, to a lesser extent, with sulfides and organic matter. Manganese is partitioned between the oxidisable, acid-extractable, and exchangeable fractions. Heavy metals and potassium display the overall tendency to reduce the contents of their residual forms towards the top of the depositional sequence. Fe, Mn, Mg and Zn were found to be the most susceptible to post-sedimentary mobilisation.     

Distribution and Contamination Status of Trace Metals in the Mediterranean Coastal Sediments,Egypt

Trace metals concentrations in sediments from the Egyptian Mediterranean coast were determined to evaluate the levels of contamination. The highest concentrations of metals were generally found in the middle region of the coast. Sediment pollution assessment was carried out using Enrichment Factor (EF), Geoaccumulation Factor (Igeo), Contamination Factor (CF), Modified Degree of Contamination (mCd), and Pollution Load Index (PLI). Association of adverse effects to aquatic life was determined using the classification of sediments according to three sets of sediment quality guidelines. The mean EF values were found to fall in the following sequence: Cr > Pb > Ni > Zn > Cu > Mn. The results demonstrated that the EF of metals in the sediments of the middle region was lower than those recorded in the western region and Rafah Station at the eastern region; the difference in the EF levels was significantly correlated with Fe concentrations along the study area. Based on the average Igeo of target elements, the Egyptian Mediterranean coast could be considered not polluted with Cr, Cu, Mn, Ni, Pb, and Zn (Igeo ≤ 0). The modified degree of contamination was >1.5, indicating zero to very low contamination. The calculated PLI were less than 1, indicating only baseline levels of pollution. There were small differences between the results obtained with the three used SQGs. Highly significant correlations were found between the concentrations of Fe, Mn, Co, Cr, and Ni, suggesting similar sources and/or similar geochemical processes controlling the occurrence of these metals in the sediments.     

Interrelationships of bacteria,meiofauna and macrofauna in a Mediterranean sedimentary beach (Maremma Park,NW Italy)

Collelungo beach (Maremma Park, NW Italy), was sampled quantitatively for macrofauna, meiofauna and bacteria in May 2003; several physicochemical variables and variables associated with food availability and sediment structure were also measured. Replicated samples were collected from three sites representing natural conditions, an erosion regime, and the influence of the Ombrone River, respectively, as well as from four stations each located in the surf and sublittoral zones. Both uni- and multivariate techniques were used to assess the benthic community structure and the associated environmental variables. Different diversity indices revealed no pattern; in contrast, multivariate techniques applied on the macrobenthic fauna and the polychaete taxocommunity distinguished between the sites located in natural and eroding conditions from the one located nearby the discharges of the Ombrone river. Τhe community patterns deriving from meio- and macrofauna are clearly divergent. The overall benthic faunal community appears to be influenced by both groups of organisms. The patterns of the meio- and macrofaunal communities seem to be affected synergistically by a number of environmental variables, in accordance with the multicausal environmental severity hypothesis. Meiofaunal patterns are more often correlated with bacteria and the protein concentration than are macrofaunal patterns, indicating a potential utilization of bacteria as a food source by the meiofaunal organisms. Total bacterial numbers are associated with the macrofaunal pattern under the erosion regime, probably as a consequence of competition for food between macrofauna and meiofauna.     

Chromium and Nickel Control in Full- and Small-scale Subsuperficial Flow Constructed Wetlands

A four-year research program has been carried out to the aim of evaluating the effectiveness of Cr and Ni removal from secondary effluent. Tests were performed in small-scale (10 l/h) and full-scale (150 m³/d) sub-surface flow (SSF) constructed wetlands (cw_s). Metals removal was also assessed as a function of increased clogging conditions that occur in the cw_s. Cr and Ni content were evaluated in sediments at various points and in plant tissues by sampling phragmites australis roots, stems, and leaves. Clogging was evaluated by measuring hydraulic conductivity at the same sampling points at the beginning and at the end of the experiment. Residence Time Distribution – RTD - curves were also assessed at the beginning and after 48 months by using lithium chloride as tracer. Plotted results showed an increased skewness in the RTD curves at the end of the experiment. Proportionality between increasing clogging conditions and sediment adsorption was observed, especially for nickel that was absorbed mainly in the roots.     

Studies of the life-history and energetics of marine and brackish-water nematodes

Summary An energy budget was constructed for the marine nematode Monhystera disjuncta. Respiration was measured with a modified Cartesian diver technique, in which the nematodes were kept in agar inside the diver head. The relationship between respiration and body weight was: R =1.53 W^0.75. Body growth was exponential during the juvenile phase, with a growth rate equal to 0.61 d^-1. After maturation the growth rate fell to 0.17 d^-1. Food uptake was measured in experiments with radiolabeled bacteria. In one series of experiments the accumulation of radiolabel in the nematodes was followed. In a second series the decrease in labeling was followed when pre-labeled nematodes fed on unlabeled bacteria. A model for label uptake permitted the calculation of assimilation efficiency and consumption rates. Consumption rates thus measured, correspond well to those calculated from the growth, reproduction and respiration rates. Assimilation efficiency was low, around 25%. Production efficiency (P/(P+R)) was high: 60% for the population at stable age distribution, and up to 75% for reproducing females. This seems to be a general feature in nematodes.     

Microalgal–meiofaunal interactions in a sublittoral site of the Gulf of Trieste (northern Adriatic Sea, Italy): A three-year study

Monthly sediment sampling was carried out from February 1999 to December 2001 at a 21-m deep station. Benthic diatom biomass and meiobenthic abundance were estimated together with abiotic parameters (PAR irradiance, temperature, salinity and dissolved oxygen). During the three-year study average microphytobenthic abundance (ABU) and biomass (BIOM) were 4.7 ± 2.6 × 10⁴ cell cm^− 3 and 14.3 ± 8.1 µg C cm^− 3, respectively, while the mean meiofaunal abundance was 923 ± 210 ind 10 cm^− 2. The microphytobenthic community was mainly composed of Bacillariophyceae (99.3%) with a smaller percentage of phytoflagellates (0.7%). Among diatoms 39 genera were observed with a total of 110 taxa and 100 species. The main benthic diatom genera were Navicula, Paralia, Nitzschia and Diploneis. A total of 18 meiobenthic taxa were detected: 7 taxa belonged to permanent meiofauna (Nematoda, Copepoda Harpacticoida and their nauplius stages, Kinorhyncha, Turbellaria, Gastrotricha, Ostracoda and Acarina). The remaining 11 taxa belonged to temporary meiofauna (juvenile macrofauna: Polychaeta, Cumacea, Amphipoda, Isopoda, Nemertea, Decapoda, Sipunculida, Ophiurida, Gastropoda, Bivalvia and Cnidaria). Positive correlations between PAR and the biomass of the major diatom genera were revealed. Temperature did not seem to influence the microphytobenthic community as a whole, although we found statistically significant correlation between temperature and the genera Nitzschia and Amphora. Salinity showed significant positive correlation only with the genus Pleurosigma, in contrast, dissolved oxygen did not seem to affect the microalgal community. The major meiofaunal taxa were not correlated with abiotic variables, but were positively correlated with most diatom genera. Paralia was negatively correlated with the three main meiofaunal taxa. The three-point moving average applied to our biotic data allowed us to better the signal without the background noise which hid the actual variations of the studied communities. Applying the three-point moving average to the main taxa, it resulted that microphyto- and meiobenthos were in phase. The principal component analysis (PCA), constructed considering both biotic and abiotic variables, accounted for 58% of the total variance. PC1 axis explained 39.74% of the total variance and was correlated with Navicula, Diploneis and Nitzschia. PC2 axis explained 18.40% of the remaining variance and was correlated with Copepoda, Paralia and PAR. In contrast to 1999 and 2001, a mucilage event occurred in 2000, which resulted in the formation of a false bottom and a decrease in the abundance of microphyto- and meiobenthos.     

Experimental investigations of benthic reentry by migrating meiobenthic copepods

The resettlement behavior of meiobenthic copepods, which actively migrated from sediments in a seagrass bed, was investigated in a shallow subtidal area in Tampa Bay, Florida, U.S.A. Experimental studies were conducted to determine whether meiobenthic copepods after emerging from sediments at sunset reenter the sedimentary substratum or select other subhabitats, water and seagrass blades. Migrating copepods were collected with emergence traps and transferred to experimental aquaria in the field which contained sediment, seagrass-blade and water treatments. Settlement into each type of treatment was measured in separate 2-h and 9-h experiments. Differences in densities of copepod taxa retrieved from emergence traps and introduced into experimental aquaria were recorded as were differing relative proportions of each copepod species returning to the substratum treatments. Settlement patterns of total copepods and three dominant copepod species, Zausodes arenicolus, Halicyclops sp. and Robertsonia hamata, departed from those expected by chance. The populations of R. hamata and Halicyclops sp. which settled were generally skewed towards males and a close matching of males and copepodites within treatment dishes was evident. Similar to nighttime-emergence patterns, timing and magnitude of postmigration reentry differs among copepod taxa and such reentry may be linked to reproductive events. Complex behavioral processes previously noted for fish and macrofaunal organisms in seagrass beds may also be important in recruitment and reassortment of meiobenthic copepods.     

Micro-benthic crustacean communities in tundra lakes of North-East European Russia

We studied micro-benthic copepods and cladocerans in the bottom substrates of 12 lakes in the Bol’shezemel’skaya tundra in North-East European Russia during the summer. About 30 species of Cladocera and 28 species and subspecies of Copepoda were found. The majority of the micro-crustaceans are palaearctic or northern palaearctic. But the harpacticoid fauna of the western part of the studied region had specific European features, and three species of the harpacticoid fauna in the eastern part of the region were Siberian. It is therefore a boundary territory for two zoogeographical regions, the arctic and subarctic zones. Acidophilic (Arcticocamptus arcticus (Lilljeborg 1902)) and halophilic (Microsetella norvegica (Boeck 1864)) harpacticoid species were found in the lakes of the eastern part of Bol’shezemel’skaya tundra. On basis of their way of locomotion we distinguished five ecological groups and on basis of their feeding habits four ecological groups of micro-crustaceans. Groups with a similar way of locomotion were likely distributed over the studied water bodies. Habitat (inshore versus offshore), substrate particle size and substrate hardness were of paramount importance for the species distribution.     

A taxonomic guide to the brittle-stars (Echinodermata,Ophiuroidea) from the State of Paraíba continental?shelf,Northeastern Brazil

We provide the first annotated checklist of ophiuroids from the continental shelf of the State of Paraíba, northeastern Brazil. Identification keys and taxonomic diagnoses for 23 species, belonging to 14 genera and 8 families, are provided. The material is deposited in the Invertebrate Collection Paulo Young, at the Federal University of Paraíba. Ophiopsila hartmeyeri represents the first record for the northeastern region of Brazil, while Ophiolepis impressa, Ophiolepis paucispina, Amphiura stimpsoni, Amphiodia riisei, Ophiactis quinqueradia, Ophiocoma wendtii and Ophionereis olivaceae are new records for the State of Paraíba. The number of species known for the state was increased from 16 to 23, representing approximately 17% of the species known for Brazil and 54% of the species known for northeastern Brazil. The recorded fauna has a large geographical and bathymetrical distribution.     

Collembola in the Bed Sediments of an Alpine Gravel Stream (RITRODAT-Lunz Study Area,Austria)

In the creek “Oberer Seebach”, 355 springtails belonging to 42 species were collected from the water-filled pore space of the bed gravel proper and the adjacent bank sediment. Almost 10 % of 2094 samples contained Collembola, with a mean density of 1.8 specimens per positive sample. The topographic distribution of the most abundant species Lepidocyrtus lignorum, Agrenia bidenticulata, and Folsomia quadrioculata suggests that riparian and eurytopic forms are frequently washed into the channel and transported down to a considerable sediment depth without injury to the animals. The rising groundwater table in the bank sediment traps no riparian, but predominantly hemiedaphic species. Euedaphic springtails are rare, especially in the groundwater samples.     

Life at the extreme: meiofauna from three unexplored lakes in the caldera of the Cerro Azul volcano,Galápagos Islands,Ecuador

On Isla Isabela, Galápagos Archipelago, three so far unexplored lakes were investigated in the caldera of Cerro Azul, one of the most active volcanoes in the world. The lakes face recurrent desiccation and eruption events and showed distinct differences in their water chemistry. Thirty cores from the upper 15 cm of sediment indicate distinct differences in the composition of meiobenthic communities between the lakes. In total, 27 different aquatic metazoan species could be distinguished. Numerically, rotifers dominated in two of the lakes, with mean densities up to 4.56 × 10⁶ individuals m⁻² while the third lake was dominated by a gastrotrich of the genus Chaetonotus (0.67 × 10⁶ individuals m⁻²). The largest lake harboured up to 14.4 × 10⁶ nematodes m⁻², which is the highest nematode density thus far reported for a freshwater habitat. The lakes yielded few nematode species (S = 7, N = 887) and calculation of the Shannon–Wiener index (H′) indicated an exceptionally low nematode diversity. The nematode community of one lake was clearly dominated by an undescribed suction-feeding Mesodorylaimus (59.6%), the community of the other lake by the epistrate feeder Achromadora pseudomicoletzkyi (89.3%), whereas the third lake surprisingly contained no nematodes. The benthic nematode biomasses for the two nematode-containing lakes differed by a factor 50. The food webs of the three lakes are presumed to have an exceptionable simply structure.