Development of a hydrothermal time model that accurately characterises how thermoinhibition regulates seed germination

Thermoinhibition is the decline in germinability within a seed population as soil temperatures increase above the optimum for germination. Hydrothermal time (HTT) models have been developed that describe the thermoinhibition response as a function of increases in the threshold water potential for seed germination [seed base water potential, Ψ(b) (G)]. Although these models assume a normal distribution of Ψ(b) (G) and a linear upward shift in Ψ(b) (G) with increasing temperature, little research has tested these assumptions. Using germination data obtained from four unrelated plant species, we fitted HTT models that use the Weibull and normal distribution to describe Ψ(b) (G) and compared the accuracy and bias of these two HTT models. For all four species, Ψ(b) (G) and germination were more accurately described by the Weibull than the normal distribution HTT model. At supra-optimal temperatures, Ψ(b) (G) of the earliest germinating seeds showed little thermoinhibition effect so that the seeds germinated very rapidly under moist conditions. However, for the rest of the population, Ψ(b) (G) increased progressively in response to supra-optimal temperatures so that the slower germinating seeds were thermoinhibited. The fitted HTT models reveal aspects of seed thermoinhibition that appear to have adaptational value under variable conditions of soil temperature and moisture.     

Quantification Assays for Total and Polyglutamine-Expanded Huntingtin Proteins

The expansion of a CAG trinucleotide repeat in the huntingtin gene, which produces huntingtin protein with an expanded polyglutamine tract, is the cause of Huntington''s disease (HD). Recent studies have reported that RNAi suppression of polyglutamine-expanded huntingtin (mutant HTT) in HD animal models can ameliorate disease phenotypes. A key requirement for such preclinical studies, as well as eventual clinical trials, aimed to reduce mutant HTT exposure is a robust method to measure HTT protein levels in select tissues. We have developed several sensitive and selective assays that measure either total human HTT or polyglutamine-expanded human HTT proteins on the electrochemiluminescence Meso Scale Discovery detection platform with an increased dynamic range over other methods. In addition, we have developed an assay to detect endogenous mouse and rat HTT proteins in pre-clinical models of HD to monitor effects on the wild type protein of both allele selective and non-selective interventions. We demonstrate the application of these assays to measure HTT protein in several HD in vitro cellular and in vivo animal model systems as well as in HD patient biosamples. Furthermore, we used purified recombinant HTT proteins as standards to quantitate the absolute amount of HTT protein in such biosamples.     

Climate alters the movement ecology of a non‐migratory bird

Global climate change is causing increased climate extremes threatening biodiversity and altering ecosystems. Climate is comprised of many variables including air temperature, barometric pressure, solar radiation, wind, relative humidity, and precipitation that interact with each other. As movement connects various aspects of an animal''s life, understanding how climate influences movement at a fine‐temporal scale will be critical to the long‐term conservation of species impacted by climate change. The sedentary nature of non‐migratory species could increase some species risk of extirpation caused by climate change. We used Northern Bobwhite (Colinus virginianus; hereafter bobwhite) as a model to better understand the relationship between climate and the movement ecology of a non‐migratory species at a fine‐temporal scale. We collected movement data on bobwhite from across western Oklahoma during 2019–2020 and paired these data with meteorological data. We analyzed movement in three different ways (probability of movement, hourly distance moved, and sinuosity) using two calculated movement metrics: hourly movement (displacement between two consecutive fixes an hour apart) and sinuosity (a form of tortuosity that determines the amount of curvature of a random search path). We used generalized linear‐mixed models to analyze probability of movement and hourly distance moved, and used linear‐mixed models to analyze sinuosity. The interaction between air temperature and solar radiation affected probability of movement and hourly distance moved. Bobwhite movement increased as air temperature increased beyond 10°C during low solar radiation. During medium and high solar radiation, bobwhite moved farther as air temperature increased until 25–30°C when hourly distance moved plateaued. Bobwhite sinuosity increased as solar radiation increased. Our results show that specific climate variables alter the fine‐scale movement of a non‐migratory species. Understanding the link between climate and movement is important to determining how climate change may impact a species’ space use and fitness now and in the future.     

Integration-independent Transgenic Huntington Disease Fragment Mouse Models Reveal Distinct Phenotypes and Life Span in Vivo

The cascade of events that lead to cognitive decline, motor deficits, and psychiatric symptoms in patients with Huntington disease (HD) is triggered by a polyglutamine expansion in the N-terminal region of the huntingtin (HTT) protein. A significant mechanism in HD is the generation of mutant HTT fragments, which are generally more toxic than the full-length HTT. The protein fragments observed in human HD tissue and mouse models of HD are formed by proteolysis or aberrant splicing of HTT. To systematically investigate the relative contribution of the various HTT protein proteolysis events observed in vivo, we generated transgenic mouse models of HD representing five distinct proteolysis fragments ending at amino acids 171, 463, 536, 552, and 586 with a polyglutamine length of 148. All lines contain a single integration at the ROSA26 locus, with expression of the fragments driven by the chicken β-actin promoter at nearly identical levels. The transgenic mice N171-Q148 and N552-Q148 display significantly accelerated phenotypes and a shortened life span when compared with N463-Q148, N536-Q148, and N586-Q148 transgenic mice. We hypothesized that the accelerated phenotype was due to altered HTT protein interactions/complexes that accumulate with age. We found evidence for altered HTT complexes in caspase-2 fragment transgenic mice (N552-Q148) and a stronger interaction with the endogenous HTT protein. These findings correlate with an altered HTT molecular complex and distinct proteins in the HTT interactome set identified by mass spectrometry. In particular, we identified HSP90AA1 (HSP86) as a potential modulator of the distinct neurotoxicity of the caspase-2 fragment mice (N552-Q148) when compared with the caspase-6 transgenic mice (N586-Q148).     

Huntingtin’s Function in Axonal Transport Is Conserved in Drosophila melanogaster

Huntington’s disease (HD) is a devastating dominantly inherited neurodegenerative disorder caused by an abnormal polyglutamine expansion in the N-terminal part of the huntingtin (HTT) protein. HTT is a large scaffold protein that interacts with more than a hundred proteins and is probably involved in several cellular functions. The mutation is dominant, and is thought to confer new and toxic functions to the protein. However, there is emerging evidence that the mutation also alters HTT’s normal functions. Therefore, HD models need to recapitulate this duality if they are to be relevant. Drosophila melanogaster is a useful in vivo model, widely used to study HD through the overexpression of full-length or N-terminal fragments of mutant human HTT. However, it is unclear whether Drosophila huntingtin (DmHTT) shares functions similar to the mammalian HTT. Here, we used various complementary approaches to analyze the function of DmHTT in fast axonal transport. We show that DmHTT interacts with the molecular motor dynein, associates with vesicles and co-sediments with microtubules. DmHTT co-localizes with Brain-derived neurotrophic factor (BDNF)-containing vesicles in rat cortical neurons and partially replaces mammalian HTT in a fast axonal transport assay. DmHTT-KO flies show a reduced fast axonal transport of synaptotagmin vesicles in motoneurons in vivo. These results suggest that the function of HTT in axonal transport is conserved between flies and mammals. Our study therefore validates Drosophila melanogaster as a model to study HTT function, and its dysfunction associated with HD.     

The seed bank longevity index revisited: limited reliability evident from a burial experiment and database analyses

Background and Aims

Seed survival in the soil contributes to population persistence and community diversity, creating a need for reliable measures of soil seed bank persistence. Several methods estimate soil seed bank persistence, most of which count seedlings emerging from soil samples. Seasonality, depth distribution and presence (or absence) in vegetation are then used to classify a species'' soil seed bank into persistent or transient, often synthesized into a longevity index. This study aims to determine if counts of seedlings from soil samples yield reliable seed bank persistence estimates and if this is correlated to seed production.

Methods

Seeds of 38 annual weeds taken from arable fields were buried in the field and their viability tested by germination and tetrazolium tests at 6 month intervals for 2·5 years. This direct measure of soil seed survival was compared with indirect estimates from the literature, which use seedling emergence from soil samples to determine seed bank persistence. Published databases were used to explore the generality of the influence of reproductive capacity on seed bank persistence estimates from seedling emergence data.

Key Results

There was no relationship between a species'' soil seed survival in the burial experiment and its seed bank persistence estimate from published data using seedling emergence from soil samples. The analysis of complementary data from published databases revealed that while seed bank persistence estimates based on seedling emergence from soil samples are generally correlated with seed production, estimates of seed banks from burial experiments are not.

Conclusions

The results can be explained in terms of the seed size–seed number trade-off, which suggests that the higher number of smaller seeds is compensated after germination. Soil seed bank persistence estimates correlated to seed production are therefore not useful for studies on population persistence or community diversity. Confusion of soil seed survival and seed production can be avoided by separate use of soil seed abundance and experimental soil seed survival.Key words: Arable weeds, Bifora testiculata, Carthamus lanatus, Centaurea solstitialis, longevity index, seed bank persistence, soil seed bank     

Environmental factors controlling seed germination and seedling recruitment of Stipa bungeana on the Loess Plateau of northwestern China

Germination studies are important for collecting information on field seedling recruitment, plant conservation and restoration. This study investigated the role of light, temperature, nitrogen, water stress and burial depth in controlling germination of Stipa bungeana seeds. S. bungeana seeds are photo-inhibited; light significantly decreased seed germination regardless of temperature and water conditions. Seeds germinated at 10–30° C, and the highest germination was 72 % and 88 % at 20° C in light and dark, respectively. Thermal model analysis showed that presence of light significantly increased average thermal requirement [θ _T (50)] from 105°Cd to 186°Cd at sub-optimal temperature, implying that light delays seed germination. Hydrotime model analysis showed that presence of light caused a shift in the median base water potential [Ψ _b(50)] from ?0.68 to ?0.26 MPa, which partly explains why light decreased both percentage and speed of germination, even at optimal conditions. As burial depth increased, seedling emergence initially increased and then decreased; the highest seedling emergence recruitment was 43 %, for seeds buried at a depth of 1 cm. Field observations showed that seedling emergence occurred primarily from July to September, and scarcely occurred from April to June. These results suggest that the light inhibitory effect is an adaptive mechanism that prevents S. bungeana seeds from germinating on the soil surface. To attain highest seedling establishment, seeds of S. bungeana should be sown at a soil depth of 1 cm prior to the rainy season, using seeds stored for 1 year.     

基于空间技术的烤烟种植生态环境综合评价分析

光照、气温、土壤类型、降水量、土壤含水量、海拔、坡度、重金属污染等自然生态环境对烤烟的分布、生长发育及品质有重要影响, 同时也是烤烟种植优化配置必不可少的基础信息。基于空间技术的烤烟种植生态环境综合评价分析的目的就是应用遥感、地理信息等空间技术, 实现烤烟种植区域生态环境信息的三维立体采集及烤烟种植生态环境适宜性空间分布信息评价。主要研究内容是分析影响烤烟种植及品质的生态因子, 应用ARCGIS空间分析功能获得海拔、坡度因子, 应用常规的遥感模型反演植被指数、地表温度、土壤含水量和太阳辐射因子, 应用Kriging插值加密地球化学数据建立烤烟种植生态环境综合评价指标体系。通过基于空间技术的烤烟种植生态环境适宜性等级空间分布优化分析结果与实验区烤烟种植示范基地和烤烟种植区域的调整结果进行对比, 可知该方法是有效的。     

Leaf water stress in engelmann spruce: influence of the root and shoot environments

The response of xylem pressure potential of Engelmann spruce (Picea engelmannii Engelm.) to environmental factors was studied in the natural subalpine environment. Data were analyzed in the context of a leaf water potential model based upon the van den Honert model for water transport through the soil-plant-atmosphere continuum. At soil temperatures of 10 to 15 C, xylem pressure potential decreased to about −10 bars as the ratio of leaf to air absolute humidity difference to leaf diffusion resistance (an estimate of transpiration) increased. The potentials were slightly lower at all flux rates above zero when the soil temperature was 5 to 10 C, and at temperatures of 0 to 5 C the potentials decreased sharply to as low as −20.4 bars, even though the soil water supply was adequate. The relative viscosity of water and soil to leaf resistances for flow were compared for Engelmann spruce and citrus at low soil temperatures. These comparisons indicated that decreased root permeability was probably not an important factor causing higher stresses in spruce at 5 to 10 C, but for citrus, root permeability became limiting at soil temperatures as high as 13.5 C. Xylem pressure potential was correlated with net radiation during the daytime when soil temperature was above 7 C. Under other conditions, however, xylem potential and net radiation apparently had a different relationship. The relationship between flux density and potential was the same on unshaded and shaded portions of the crown, with differences in potential related to differences in flux density.     

Performance of a model for egg hatching of the western corn rootworm,Diabrotica virgifera virgifera LeConte,using measured and modelled soil temperatures as input

A model for egg hatching of the western corn rootworm,Diabrotica virgifera virgifera LeConte, was tested at several locations in Ontario, Canada, during the 1989 and 1990 seasons. The model required soil temperatures as input and was tested using measured and modelled data. Modelled soil temperatures at 5 and 10 cm depths were obtained from empirically and physically based models. The physically based model provided better estimates of soil temperatues, but both models slightly underestimated the temperatures. Predicted egg hatching, using measured and modelled soil temperature at 5 and 10 cm depths for all locations, compared reasonably well with the observations of egg hatching. When using modelled soil temperatures, the egg developmental model performed better using soil temperatures from the physically based model. However, both soil temperature models provided sufficiently accurate temperature values for use in the egg developmental model. Unlike the empirically based model, the physically based model was not site-specific and its application to larger areas appeared feasible.     

Mechanisms regulating seedling emergence of orchardgrass (Dactylis glomerata L.) and western wheatgrass (Pascopyrum smithii [Rydb.] L.): Dormancy change,seed fate and seeding date

Seed germination and seedling emergence of ‘Arctic’ and ‘Lineta’ orchardgrass (Dactylis glomerata L.) and ‘Walsh’ and ‘LC9078a’ western wheatgrass (Pascopyrum smithii [Rydb.] L.) were studied both in the field and laboratory. Four seeding dates were conducted each year over 2 years and seedling emergence and seed fate in the soil were monitored. The effects of alternating temperature and light on germination were quantified and correlated with seedling emergence from soil and in the field. Orchardgrass seeds were less dormant than western wheatgrass as indicated by the disparity in germination percentage between constant and alternating temperatures. Seed germination percentage was usually higher than seedling emergence in the field for orchardgrass but lower for western wheatgrass, and temperature was not responsible for the difference. Exposing orchardgrass seeds to light during germination check helped break dormancy in orchardgrass when temperature was unfavorable (low and/or constant temperatures), while favorable temperatures (optimal, alternating temperatures) conditions overcame the inhibiting effect of light in western wheatgrass. The final seedling emergence of orchardgrass was either similar among the four seeding dates or decreased slightly from early May to early June. For western wheatgrass, however, final seedling emergence increased with seeding dates from early to late May and decreased in early June. Soil temperatures of the first 2 weeks after seeding increased from the early May to late May and then decreased. These temperatures were below or near the optimal temperatures for western wheatgrass seeds to release dormancy and germinate. Germination of the previously buried seeds indicated that orchardgrass and western wheatgrass had the potential for a high germination percentage under field conditions for all seeding dates. While soil temperatures close to the optimal temperature for dormancy breaking and germination promoted germination of orchardgrass, the same conditions could cause deterioration of seeds if they failed to germinate. For western wheatgrass, deeper dormancy reduced seed mortality.     

Patterns of tree species richness in relation to environment in southeastern New South Wales,Australia

Abstract We present regression models of species richness for total tree species, two growth forms, rainforest trees (broadleaf evergreens) and eucalypts (sclerophylls), and two large subgenera of Eucalyptus. The correlative models are based on a data set of 166 tree species from 7208 plots in an area of southeastern New South Wales, Australia. Eight environmental variables are used to model the patterns of species richness, four continuous variables (mean annual temperature, rainfall, radiation and plot size), plus four categorical factors (topographic position, lithology, soil nutrient level and rainfall seasonality). Generalized linear modelling with curvilinear and interaction terms, is used to derive the models. Each model shows a significant and differing response to the environmental predictors. Maximum species richness of eucalypts occurs at high temperatures, and intermediate rainfall and radiation conditions on ridges with aseasonal rainfall and intermediate nutrient levels. Maximum richness of rainforest species occurs at high temperatures, intermediate rainfall and low radiation in gullies with summer rainfall and high nutrient levels. The eucalypt subgenera models differ in ways consistent with experimental studies of habitat preferences of the subgenera. Curvilinear and interaction terms are necessary for adequate modelling. Patterns of richness vary widely with taxonomic rank and growth form. Any theories of species diversity should be consistent with these correlative models. The models are consistent with an available energy hypothesis based on actual evapotranspiration. We conclude that studies of species richness patterns should include local (e.g. soil nutrients, topographic position) and regional (e.g. mean annual temperature, annual rainfall) environmental variables before invoking concepts such as niche saturation.     

Expression of Mutant Huntingtin in Leptin Receptor-Expressing Neurons Does Not Control the Metabolic and Psychiatric Phenotype of the BACHD Mouse

Metabolic and psychiatric disturbances occur early on in the clinical manifestation of Huntington’s disease (HD), a neurodegenerative disorder caused by an expanded CAG repeat in the huntingtin (HTT) gene. Hypothalamus has emerged as an important site of pathology and alterations in this area and its neuroendocrine circuits may play a role in causing early non-motor symptoms and signs in HD. Leptin is a hormone that controls energy homeostasis by signaling through leptin receptors in the hypothalamus. Disturbed leptin action is implicated in both obesity and depression and altered circulating levels of leptin have been reported in both clinical HD and rodent models of the disease. Pathological leptin signaling may therefore be involved in causing the metabolic and psychiatric disturbances of HD. Here we tested the hypothesis that expression of mutant HTT in leptin receptor carrying neurons plays a role in the development of the non-motor phenotype in the BACHD mouse model. Our results show that inactivation of mutant HTT in leptin receptor-expressing neurons in the BACHD mouse using cross-breeding based on a cre-loxP system did not have an effect on the metabolic phenotype or anxiety-like behavior. The data suggest that mutant HTT disrupts critical hypothalamic pathways by other mechanisms than interfering with intracellular leptin signaling.     

南方红豆杉生长发育及其紫杉醇含量与环境因子的关系

研究了人工种植的3年生南方红豆杉的生长发育特征及其枝叶中紫杉醇的含量,并观测了其生长环境因子的动态特征。通过对南方红豆杉的生长发育特征以及其枝叶中紫杉醇含量与生长环境因子进行相关分析发现,南方红豆杉生长发育与空气和土壤湿度呈极显著的正相关,与空气和土壤温度、土壤N和K含量、土壤有机质和土壤紧实度呈正相关,与净辐射和土壤P含量呈负相关,但相关关系不显著,说明高温、高湿以及遮荫有利于南方红豆杉的生长,且对土壤P含量有较高需求;南方红豆杉枝叶中紫杉醇含量与空气和土壤湿度、土壤N、P和K含量呈负相关,与净辐射、空气和土壤温度、土壤有机质和土壤紧实度呈正相关,但相关关系均不显著,说明高温、高光强和干旱促进南方红豆杉枝叶中紫杉醇含量的增加,且紫杉醇含量的增加对土壤中N、P和K含量有一定的需求,尤其是N和K,对P需求不大;南方红豆杉生长发育与其枝叶中紫杉醇含量呈负相关,相关关系也不显著,推测紫杉醇可能是南方红豆杉的防御物质,以促使南方红豆杉抵御高温、干旱和高光强等不良环境。     

Polyglutamine- and Temperature-Dependent Conformational Rigidity in Mutant Huntingtin Revealed by Immunoassays and Circular Dichroism Spectroscopy

Background

In Huntington''s disease, expansion of a CAG triplet repeat occurs in exon 1 of the huntingtin gene (HTT), resulting in a protein bearing>35 polyglutamine residues whose N-terminal fragments display a high propensity to misfold and aggregate. Recent data demonstrate that polyglutamine expansion results in conformational changes in the huntingtin protein (HTT), which likely influence its biological and biophysical properties. Developing assays to characterize and measure these conformational changes in isolated proteins and biological samples would advance the testing of novel therapeutic approaches aimed at correcting mutant HTT misfolding. Time-resolved Förster energy transfer (TR-FRET)-based assays represent high-throughput, homogeneous, sensitive immunoassays widely employed for the quantification of proteins of interest. TR-FRET is extremely sensitive to small distances and can therefore provide conformational information based on detection of exposure and relative position of epitopes present on the target protein as recognized by selective antibodies. We have previously reported TR-FRET assays to quantify HTT proteins based on the use of antibodies specific for different amino-terminal HTT epitopes. Here, we investigate the possibility of interrogating HTT protein conformation using these assays.

Methodology/Principal Findings

By performing TR-FRET measurements on the same samples (purified recombinant proteins or lysates from cells expressing HTT fragments or full length protein) at different temperatures, we have discovered a temperature-dependent, reversible, polyglutamine-dependent conformational change of wild type and expanded mutant HTT proteins. Circular dichroism spectroscopy confirms the temperature and polyglutamine-dependent change in HTT structure, revealing an effect of polyglutamine length and of temperature on the alpha-helical content of the protein.

Conclusions/Significance

The temperature- and polyglutamine-dependent effects observed with TR-FRET on HTT proteins represent a simple, scalable, quantitative and sensitive assay to identify genetic and pharmacological modulators of mutant HTT conformation, and potentially to assess the relevance of conformational changes during onset and progression of Huntington''s disease.     

Predicting future climate at high spatial and temporal resolution

Most studies on the biological effects of future climatic changes rely on seasonally aggregated, coarse‐resolution data. Such data mask spatial and temporal variability in microclimate driven by terrain, wind and vegetation, and ultimately bear little resemblance to the conditions that organisms experience in the wild. Here, I present the methods for providing fine‐grained, hourly and daily estimates of current and future temperature and soil moisture over decadal timescales. Observed climate data and spatially coherent probabilistic projections of daily future weather were disaggregated to hourly and used to drive empirically calibrated physical models of thermal and hydrological microclimates. Mesoclimatic effects (cold‐air drainage, coastal exposure and elevation) were determined from the coarse‐resolution climate surfaces using thin‐plate spline models with coastal exposure and elevation as predictors. Differences between micro and mesoclimate temperatures were determined from terrain, vegetation and ground properties using energy balance equations. Soil moisture was computed in a thin upper layer and an underlying deeper layer, and the exchange of water between these layers was calculated using the van Genuchten equation. Code for processing the data and running the models is provided as a series of R packages. The methods were applied to the Lizard Peninsula, United Kingdom, to provide hourly estimates of temperature (100 m grid resolution over entire area, 1 m for a selected area) for the periods 1983–2017 and 2041–2049. Results indicated that there is a fine‐resolution variability in climatic changes, driven primarily by interactions between landscape features and decadal trends in weather conditions. High‐temporal resolution extremes in conditions under future climate change were predicted to be considerably less novel than the extremes estimated using seasonally aggregated variables. The study highlights the need to more accurately estimate the future climatic conditions experienced by organisms and equips biologists with the means to do so.     

栗山天牛成虫羽化与温湿度的关系

栗山天牛Massicus raddei (Blessig)是危害我国东北辽东栎Quercus liaotungensis和蒙古栎Q.mongolicus天然林的重大害虫,生活周期长,3a发生1代,而且生活史整齐,在东北林区的辽宁、吉林和内蒙发育历期基本一致,因而绝大部分的成虫羽化时期出现在同一年份.为了有效防治栗山天牛,利用栗山天牛成虫具有趋光性这一特点,研究发明了诱集捕杀成虫的专用黑光灯,诱杀了大量的栗山天牛成虫,吉林省2008年共诱杀栗山天牛成虫达24.16t.根据每天晚上所诱到的栗山天牛的成虫数量(平均lkg栗山天牛成虫数量为430头,按此折合成重量kg统计),分析栗山天牛在成虫发生期其羽化数量与温湿度因子的关系.结果表明,栗山天牛成虫的羽化高峰期集中在7月下旬至8月上旬;成虫的羽化与林间气温呈显著的正相关关系,与相对湿度则呈显著负相关关系.研究对栗山天牛成虫的发生量与温湿度的关系进行了拟合.研究结果为我国东北林区栗山天牛成虫羽化年份预测预报成虫出现和发生期以及在成虫发生期开展防治提供了依据.