Early emergence and resource availability can competitively favour natives over a functionally similar invader

Invasive plant species can form dense populations across large tracts of land. Based on these observations of dominance, invaders are often described as competitively superior, despite little direct evidence of competitive interactions with natives. The few studies that have measured competitive interactions have tended to compare an invader to natives that are unlikely to be strong competitors because they are functionally different. In this study, we measured competitive interactions among an invasive grass and two Australian native grasses that are functionally similar and widely distributed. We conducted a pair-wise glasshouse experiment, where we manipulated both biotic factors (timing of establishment, neighbour identity and density) and abiotic factors (nutrients and timing of water supply). We found that the invader significantly suppressed the performance of the natives; but its suppression ability was contingent on resource levels, with pulsed water/low nutrients or continuous watering reducing its competitive effects. The native grasses were able to suppress the performance of the invader when given a 3-week head-start, suggesting the invader may be incapable of establishing unless it emerges first, including in its own understorey. These findings provide insight for restoration, as the competitive effect of a functionally similar invader may be reduced by altering abiotic and biotic conditions in favour of natives.     

Effects of native species diversity and resource additions on invader impact

Theory and empirical work have demonstrated that diverse communities can inhibit invasion. Yet, it is unclear how diversity influences invader impact, how impact varies among exotics, and what the relative importance of diversity is versus extrinsic factors that themselves can influence invasion. To address these issues, we established plant assemblages that varied in native species and functional richness and crossed this gradient in diversity with resource (water) addition. Identical assemblages were either uninvaded or invaded with one of three exotic forbs: spotted knapweed (Centaurea maculosa), dalmatian toadflax (Linaria dalmatica), or sulfur cinquefoil (Potentilla recta). To determine impacts, we measured the effects of exotics on native biomass and, for spotted knapweed, on soil moisture and nitrogen levels. Assemblages with high species richness were less invaded and less impacted than less diverse assemblages. Impact scaled with exotic biomass; spotted knapweed had the largest impact on native biomass compared with the other exotics. Although invasion depressed native biomass, the net result was to increase total community yield. Water addition increased invasibility (for knapweed only) but had no effect on invader impact. Together, these results suggest that diversity inhibits invasion and reduces impact more than resource additions facilitate invasion or impact.     

Social interactions regulate resource utilization in a Tephritidae fruit fly

Previous studies have suggested that social interactions (e.g., the actions and reactions elicited by the interaction of co-specific individuals) induce individual fruit flies (Tephritidae) to ingest more food, especially protein-rich food. Changes in feeding behavior related to social interactions have been associated with reproduction (e.g., when different sexes are present), reproductive facilitation (e.g., when two females interact) and stress and aggression (e.g., flies of the same sex, or crowdedness). The present study investigated the effect of social interaction on the feeding, longevity and resource management of the Ethiopian fruit fly, Dacus ciliatus. Single flies and pairs of flies (of the same or different sexes) were confined to a small arena (the PUB system), in which we measured the amount of liquid food ingested daily by each fly. In addition, we sampled flies of different ages, extracted and quantified their lipid and protein contents, and related individual metabolic contents to the ingestion of a fructose and protein hydrolysate solution. Results showed that individual ingestion was significantly higher in flies maintained in pairs than in flies kept as solitary individuals. The highest intake rates were observed for the female–female pairs. In general, females ingested significantly greater volumes than males. Lipid contents tended to decrease progressively with age in flies kept as solitary individuals, especially in female flies, while lipid levels decreased and then increased in flies maintained in pairs. Protein trends were similar, although less pronounced than the patterns observed for the lipids. The flies kept as solitary individuals lived significantly longer than those kept in pairs. A resource-management analysis points to a decreased metabolic rate in flies kept as solitary individuals, as compared to paired flies. Results are discussed in view of theories of resource management and survival strategies.     

Metagenome resource for D-serine utilization in a DsdA-disrupted Escherichia coli

To find alternative genetic resources for D-serine dehydratase (E.C. 4.3.1.18, dsdA) mediating the deamination of D-serine into pyruvate, metagenomic libraries were screened. The chromosomal dsdA gene of a wild-type Escherichia coli W3110 strain was disrupted by inserting the tetracycline resistance gene (tet), using double-crossover, for use as a screening host. The W3110 dsdA::tet strain was not able to grow in a medium containing D-serine as a sole carbon source, whereas wild-type W3110 and the complement W3110 dsdA::tet strain containing a dsdA-expression plasmid were able to grow. After introducing metagenome libraries into the screening host, a strain containing a 40-kb DNA fragment obtained from the metagenomic souce derived from a compost was selected based on its capability to grow on the agar plate containing D-serine as a sole carbon source. For identification of the genetic resource responsible for the D-serine degrading capability, transposon- micron was randomly inserted into the 40-kb metagenome. Two strains that had lost their D-serine degrading ability were negatively selected, and the two 6-kb contigs responsible for the D-serine degrading capability were sequenced and deposited (GenBank code: HQ829474.1 and HQ829475.1). Therefore, new alternative genetic resources for D-serine dehydratase was found from the metagenomic resource, and the corresponding ORFs are discussed.     

Changes in pelagic Polychaete assemblages along the California current system

The composition, abundance, species richness and structural changes of the planktonic polychaete assemblages were analysed along a latitudinal transect in the California Current System (California, U.S.A. and Baja California, Mexico). The biological (species and abundance) and physical (temperature and salinity) data were analysed using Principal Component Analysis (PCA). The principal water masses in the survey area were determined. Twenty-four holoplanktonic species belonging to families Alciopidae, Iospilidae, Lopadorhynchidae, Tomopteridae and Typhloscolecidae were identified. Three clear species assemblages were discerned in the PCA results: 1. A `north group' (from Oregon-California border to San Francisco), with relatively high species richness (11) and the highest mean abundance (121 ind. per 500 m<sup>3</sup>) was characterised by Tomopteris septentrionalis, T. planktonis, Plotohelmis tenuis, and Travisiopis lobifera. California Current Water and Subtropical Central Water were present in the area occupied by this assemblage. 2. A `south group' (from off Bahía Magdalena to Cabo San Lucas), with the highest species richness (16), but low mean abundance (37.8 ind. per 500 m³); it included tropical affinity species, such Lopadorhynchus henseni, Tomopteris nationalis, and Travisiopsis dubia. In concordance Surface Equatorial Water was identified in this region. 3. A `transition group' (between the north and south regions) recorded the lowest mean abundance (2.3 ind. per 500 m³) and species richness (9). Only the California Current Water was detected in this area. The spatial pattern of species richness found along of this transect, was at least, partially due to the planktonic productivity distribution in the epipelagic region and the influence of several water masses coming from different directions.     

Evaluation of a black-footed ferret resource utilization function model

Resource utilization function (RUF) models permit evaluation of potential habitat for endangered species; ideally such models should be evaluated before use in management decision-making. We evaluated the predictive capabilities of a previously developed black-footed ferret (Mustela nigripes) RUF. Using the population-level RUF, generated from ferret observations at an adjacent yet distinct colony, we predicted the distribution of ferrets within a black-tailed prairie dog (Cynomys ludovicianus) colony in the Conata Basin, South Dakota, USA. We evaluated model performance, using data collected during post-breeding spotlight surveys (2007–2008) by assessing model agreement via weighted compositional analysis and count-metrics. Compositional analysis of home range use and colony-level availability, and core area use and home range availability, demonstrated ferret selection of the predicted Very high and High occurrence categories in 2007 and 2008. Simple count-metrics corroborated these findings and suggested selection of the Very high category in 2007 and the Very high and High categories in 2008. Collectively, these results suggested that the RUF was useful in predicting occurrence and intensity of space use of ferrets at our study site, the 2 objectives of the RUF. Application of this validated RUF would increase the resolution of habitat evaluations, permitting prediction of the distribution of ferrets within distinct colonies. Additional model evaluation at other sites, on other black-tailed prairie dog colonies of varying resource configuration and size, would increase understanding of influences upon model performance and the general utility of the RUF. © 2011 The Wildlife Society.     

Adaptive phenotypic plasticity in a clonal invader

Organisms featuring wide trait variability and occurring in a wide range of habitats, such as the ovoviviparous New Zealand freshwater snail Potamopyrgus antipodarum, are ideal models to study adaptation. Since the mid‐19th century, P. antipodarum, characterized by extremely variable shell morphology, has successfully invaded aquatic areas on four continents. Because these obligately and wholly asexual invasive populations harbor low genetic diversity compared to mixed sexual/asexual populations in the native range, we hypothesized that (1) this phenotypic variation in the invasive range might be adaptive with respect to colonization of novel habitats, and (2) that at least some of the variation might be caused by phenotypic plasticity. We surveyed 425 snails from 21 localities across northwest Europe to attempt to disentangle genetic and environmental effects on shell morphology. We analyzed brood size as proxy for fitness and shell geometric morphometrics, while controlling for genetic background. Our survey revealed 10 SNP genotypes nested into two mtDNA haplotypes and indicated that mainly lineage drove variation in shell shape but not size. Physicochemical parameters affected both shell shape and size and the interaction of these traits with brood size. In particular, stronger stream flow rates were associated with larger shells. Our measurements of brood size suggested that relatively larger slender snails with relatively large apertures were better adapted to strong flow than counterparts with broader shells and relatively small apertures. In conclusion, the apparent potential to modify shell morphology plays likely a key role in the invasive success of P. antipodarum; the two main components of shell morphology, namely shape and size, being differentially controlled, the former mainly genetically and the latter predominantly by phenotypic plasticity.     

How invader traits interact with resident communities and resource availability to determine invasion success

Competition for limited resources is considered a key factor controlling invasion success. Resource availability can be viewed in either the long or short‐term. Long‐term availability depends on the baseline nutrient availability in the ecosystem and how those conditions shape the ecological community. Short‐term resource availability fluctuates with disturbances that alter nutrient availability and/or the density and composition of the ecological community. We investigated how species’ traits interact with short and long‐term resource availability to determine the outcome of invasions. We manipulated long‐term baseline resource availability, disturbance intensity, disturbance frequency, and propagule pressure in a fully factorial design using protist microcosms. Our results show that short and long‐term resource availability and the direct mortality from disturbance interact with the traits of resident community members and traits of invaders to determine community invasibility. While competitively dominant invaders with slow growth rates may suffer rather than benefit from short‐term resource fluctuations, quickly growing but competitively inferior invaders can benefit from both the resource fluctuations and the heterogeneity in community composition created by disturbance. Our findings empirically synthesize two explanations for invasion success, namely short‐term resource fluctuations and long‐term resource availability, and highlight the importance of considering traits of invaders and residents, such as growth rate and competitive ability, in the context of productivity and disturbance gradients. This species’ traits approach could resolve idiosyncratic results from natural systems undergoing disturbance and invasion that do not follow patterns predicted by traditional invasion frameworks.     

Dispersion analyses and resource utilization of aphid parasitoids in a non-depletable environment

Dispersions and resource utilization of primary and secondary parasitoids developing in non-depletable primary host populations were determined for an aphid-parasitoid community occurring on strawberries. Analyses of dispersions based onGreen 's coefficient andLloyd 's Patchiness Index indicated parasitized aphids were highly aggregated initially, became less aggregated as density increased, and remained aggregated following collapse of the aphid populations. The “index of aggregation” values calculated usingTaylor 's Power Law concurred with results from the other indices, and the similarity of the regression coefficients from both seasons suggests that the index of aggregation may be characteristic for communities as well as species. Analysis withIwao 's regression of mean crowding on the mean generated similar results when population data were stratified temporally, and also indicated that the individual was the basic unit of the population. In a non-depletable environment, oviposition of individuals exhibiting an aggregated dispersion pattern within clumps of hosts provides primary parasitoids with a suitable trade-off between energy utilization or genetic potential, and losses associated with hyperparasitism.     

Habitat loss and possible effects on local species richness in a species-poor system: a case study of southern Baltic Sea macrofauna

The effects of habitat loss on local species richness depend on the characteristics of the endangered system (including its total species pool and the distribution of species among the habitats). The present study focuses on the species-poor southern Baltic marine benthic biota. Macrobenthic samples were collected in three habitats: (1) soft bottom covered with vegetation; (2) stony reefs; (3) unvegetated sands. Fourty one percent of 54 observed macrozoobenthic species were habitat specific, while 30% occurred in all three habitats. There were no significant differences in total species richness among the three habitats. The accumulation curves plotted for subsets of data with selected habitats excluded lay below the curve plotted for the whole dataset, but only in one case the 95% confidence intervals of the subset curve did not overlap with those plotted for the whole dataset. The exclusion of samples from selected habitats produced a species richness drop ranging from 9 to 13%. The present study showed that habitat loss in a species-poor area with a relatively large ratio of generalist species cannot produce local species richness declines similar to those predicted for diverse marine systems. However, it must be emphasized that in species-poor systems, the loss of ecological function accompanying habitat loss could be disproportionally higher than that predicted based on decreases in species richness, as some functions are performed by a single species.     

Biodiversity and ecosystem functioning in a species-poor guild: a test using tropical stream detritivores

The relationship between biodiversity and ecosystem functioning (B–EF) was investigated by examining top-down effects of aquatic detritivore diversity on the functional process of leaf-litter breakdown. This study was undertaken in tropical Hong Kong where the stream detritivore guild is depauperate and loss of one or a few species might have strong effects on processes. Effects of detritivore richness and composition were investigated by comparing feeding rates of three species of detritivores with their two- and three-species mixtures in laboratory trials. The detritivores were a caddisfly larva (Anisocentropus maculatus: Calamoceratidae), a snail (Brotia hainanensis: Pachychilidae) and a shrimp (Caridina cantonensis: Atyidae). Liquidambar formosana (Hamamelidaceae) litter was provided as food. All three detritivore species had positive non-additive effects on litter processing. Per capita and mass-specific feeding rates of each species were faster in mixtures than when they were alone, although the non-additive effects of shrimps and snails were larger than those attributable to caddisflies, and thus, litter processing was strongly influenced by the composition of detritivore mixtures. The compositional effect appears to be evidence of facilitation indicating a lack of functional redundancy amongst these detritivores, probably due to their evolutionary distinctness, implying that extinction consequences in this species-poor guild will depend on the identity of the species lost.     

Oogenesis in the Polychaete Dipolydora commensalis

Oocytes of the polychaete Dipolydora commensalis develop in the gonad, in close contact with the wall of the genital blood vessel, up to the late stages of vitellogenesis. At the blood vessel wall, between the neighboring vitellogenic oocytes, and sometimes on the apical surface of the oocytes, there are flattened follicular cells. However, no continuous, well-expressed gonad envelope is found. Oogenesis is asynchronous. Gametes at all developmental stages, from oogonia to late vitellogenic oocytes, occur in the gonad. Dividing oogonia vary from 6 to 10 m in diameter. RNA, proteins, glycogen, and lipids accumulate in the oocytes during vitellogenesis. The breakdown of the oocyte germ vesicle occurs in the gonad. Before spawning, gametes accumulate in the coelom and reach 80–90 m in diameter, at which point a new generation appears in the gonad.     

Evolution of specialization in resource utilization in structured metapopulations

We study the evolution of resource utilization in a structured discrete-time metapopulation model with an infinite number of patches, prone to local catastrophes. The consumer faces a trade-off in the abilities to consume two resources available in different amounts in each patch. We analyse how the evolution of specialization in the utilization of the resources is affected by different ecological factors: migration, local growth, local catastrophes, forms of the trade-off and distribution of the resources in the patches. Our modelling approach offers a natural way to include more than two patch types into the models. This has not been usually possible in the previous spatially heterogeneous models focusing on the evolution of specialization.     

Evolution of specialization in resource utilization in structured metapopulations

We study the evolution of resource utilization in a structured discrete-time metapopulation model with an infinite number of patches, prone to local catastrophes. The consumer faces a trade-off in the abilities to consume two resources available in different amounts in each patch. We analyse how the evolution of specialization in the utilization of the resources is affected by different ecological factors: migration, local growth, local catastrophes, forms of the trade-off and distribution of the resources in the patches. Our modelling approach offers a natural way to include more than two patch types into the models. This has not been usually possible in the previous spatially heterogeneous models focusing on the evolution of specialization.     

The ZZP Questionnaire. Reliability of a new resource utilization measure

Data to determine the resource utilization of care recipients need to be reliable and the items that are measured need to be useful. In 2006, the Dutch Ministry of Health and Welfare has mandated all nursing homes and homes for the elderly to measure the Resource Utilization of all residents with the ZZP Questionnaire. Are the data resulting from this measurement reliable and is each of the 54 items of the ZZP Questionnaire useful? To answer this we tested the reliability of the data in a nursing home and a home for the elderly in two wards each. For 122 residents questionnaires were completed such that the inter- and intra-rater reliability of the answers could be assessed. Ten of the 54 items in the questionnaire showed insufficient inter rater reliability (<0.40) on the weighted Cohen kappa and another sixteen moderate (0.40 - 0.60). On the intra rater reliability test seven items had an insufficient kappa and another fifteen moderate. Besides, ten clusters of items could be formed with in-cluster Spearman correlation rates of .75 or higher. From the results of the reliability tests and the item intercorrelation rates we concluded that a substantial number of items needs to be improved and that in the ZZP Questionnaire 15 of the 54 items appear to be redundant on statistical grounds.     

A strategy of movement and resource utilization

A set of age-specific rates of birth and death implies expected numbers of kin. An individual girl or woman chosen at random out of a population whose birth and death rates are specified can be expected to have a certain number of older sisters, younger sisters, nieces, cousins; expressions for these values are provided for both total kin and kin who are still living. Included also are the probabilities of living mother, grandmother, and great grandmother for girls and women of various ages. The methods are applicable to the size of the nuclear and the extended family. All formulas have been programmed and specimen numerical values are given.     

Genome resource utilization during prokaryotic development.

The distributions of synthesis rates of expressed proteins in a liquid batch culture of the prokaryote S. coelicolor during 3 days' growth have been analyzed by using a law governing the relation between the synthesis rates and the corresponding ranks in a list of rates (the so-called simplified canonical law, scl), which we have found previously to characterize the distribution of prokaryotic protein expression. The scl remains valid throughout development and the two parameters of the distribution, q and r, evolve in a highly characteristic and revealing way. q is a measure of the degree to which available genomic resources are used, in the sense of exploiting their potential diversity. The passage from one developmental phase to another is marked by a sharp peak in q, as these resources are fully mobilized to deal with a crisis (i.e., exhaustion of the habitual food supply). This is followed by an even more pronounced trough, as the organism briefly focuses its resources on synthesizing just those proteins most essential for survival, especially those hitherto unavailable and needed for metabolizing the new nutrient source. The parameter r indicates redundancy among the most abundantly expressed proteins: higher r corresponds to more diversity; i.e., less duplication of function, hence less robustness. This parameter is relatively steady throughout the development of the culture, except for a pronounced peak during the developmental phase transition. This corresponds to the "emergency mode" characterized by extremely low q, during which a minimum repertoire of proteins is expressed.     

Metabolic engineering applications to renewable resource utilization

Lignocellulosic materials containing cellulose, hemicellulose, and lignin are the most abundant renewable organic resource on earth. The utilization of renewable resources for energy and chemicals is expected to increase in the near future. The conversion of both cellulose (glucose) and hemicellulose (hexose and pentose) for the production of fuel ethanol is being studied intensively, with a view to developing a technically and economically viable bioprocess. Whereas the fermentation of glucose can be carried out efficiently, the bioconversion of the pentose fraction (xylose and arabinose, the main pentose sugars obtained on hydrolysis of hemicellulose), presents a challenge. A lot of attention has therefore been focused on genetically engineering strains that can efficiently utilize both glucose and pentoses, and convert them to useful compounds, such as ethanol. Metabolic strategies seek to generate efficient biocatalysts (bacteria and yeast) for the bioconversion of most hemicellulosic sugars to products that can be derived from the primary metabolism, such as ethanol. The metabolic engineering objectives so far have focused on higher yields, productivities and expanding the substrate and product spectra.     

Complex effects of grazing treatment on an annual in a species-poor grassland community

Abstract. The effects of grazing upon the establishment, survival, growth and reproduction of a grassland annual Geranium dissectum growing in a sward dominated by grasses were examined in a replicated grazing experiment with sheep. Seeds were sown in both summer and autumn, and grazing was controlled to produce two levels of grazing in winter, two levels in spring, and two in summer, combined in a 2 x 2 x 2 factorial experimental design. Higher intensities of grazing in the period immediately before emergence benefitted plant establishment, but subsequent survival showed many interactions between factors, demonstrating that under certain conditions and at certain times grazing was detrimental. It is suggested that the frequency of G. dissectum in the grassland was low because the heavy grazing conditions that foster seedling emergence also jeopardize subsequent survival. This may also be why productive grassland communities in general contain few palatable dicots.