Temporal variation in habitat structure and shrubsteppe bird dynamics

Summary We investigate the role of temporal variation in habitat physiognomy in influencing the dynamics of shrubsteppe bird populations and communities. During a 3-y (1977–1979) study of 14 sites in the northern Great Basin of North America, annual precipitation varied substantially, with one of the driest years on record followed by one of the wettest. This resulted in significant physiognomic variation (increasing height and coverage of vegetation, decreasing horizontal patchiness), mediated largely by changes in the annual elements of the flora, particularly forbs and grasses. Shrub species coverage values, on the other hand, demonstrated no statistically detectable year-to-year changes, nor were they correlated with any physiognomic variation. Despite large scale physiognomic changes, no bird species' abundance varied in a statistically significant fashion; neither could variation in bird abundances be correlated with variation in either physiognomy or shrub species coverages.Multivariate analyses revealed essentially the same patterns as the univariate analyses: substantial changes in physiognomy, few changes in shrub species coverages or bird species abundances, and little correlation of temporal variation among the three data sets. Calculation of the Euclidean distances that sites moved in multivariate physiognomic, bird species, or shrub species hyperspaces yields synthetic gradients of annual turnover of sites with respect to those data sets. Sites identified as demonstrating high physiognomic turnover were characterized by high coverage of grass and forbs, while low turnover sites had greater coverage of shrubs and higher shrub species diversity. Relatively high bird turnover sites had greater numbers of Western Meadowlarks and Black-throated Sparrows, while more stable sites had high numbers of Brewer's Sparrows. Physiognomically, high bird turnover sites were grassier and had greater total vegetation coverage, while low bird turnover sites had more bare ground and higher horizontal patchiness. A site's position on the avifauna turnover axis, however, was uncorrelated with its position on the physiognomic turnover axis. Shrub species showed virtually no annual turnover.Reanalysis of a previous Principal Components Analysis (PCA) of these same data sets that was applied without regard to year of sampling revealed that the first physiognomic component (41% of the total physiognomic variability) did in fact have a strong temporal element, and that this element was consistent with the changes in univariate characters noted above. No other physiognomic component could be associated with annual variation, nor could any components of parallel bird abundance or shrub species coverage PCA's.Regional patterns indicate that sites tended to be very consistent from year to year in their relationships to one another as defined by their relative locations in either physiognomic or shrub species hyperspaces, but varied independently of one another with respect to their bird species abundances and composition. Examination of the temporal consistency of site relationships between bird space and vegetation space reveals that bird communities are to a large degree independent of a site's physiognomic position, but instead are strongly associated with its position in shrub species hyperspace.The overall patterns that emerge from these analyses are consistent with the so-called checkerboard effect that results from the apparently random annual redistribution of individual birds, and leads to the conclusion that populations of shrubsteppe birds are not existing at maximum density or carrying capacity. Such observations are consistent with contentions that these populations lack close biological coupling with coexisting species and that interactions among these species (e.g. competition) are likely to play little if any role in the organization of their communities.     

Seasonal matching of habitat quality and fitness in a migratory bird

When species occupy habitats that vary in quality, choice of habitat can be critical in determining individual fitness. In most migratory species, juveniles migrate independently of their parents and must therefore choose both breeding and winter habitats. Using a unique dataset of marked black-tailed godwits (Limosa limosa islandica) tracked throughout their migratory range, combined with analyses of stable carbon isotope ratios, we show that those individuals that occupy higher quality breeding sites also use higher quality winter sites. This seasonal matching can severely inflate inequalities in individual fitness. This population has expanded over the last century into poorer quality breeding and winter habitats and, across the whole population; individual birds tend to occupy either novel or traditional sites in both seasons. Winter and breeding season habitat selection are thus strongly linked throughout this population; these links have profound implications for a wide range of population and evolutionary processes. As adult godwits are highly philopatric, the initial choice of winter habitat by juveniles will be critical in determining future survival, timing of migration and breeding success.     

Non-breeding season habitat quality mediates the strength of density-dependence for a migratory bird

Our understanding of when natural populations are regulated during their annual cycle is limited, particularly for migratory species. This information is needed for parametrizing models that can inform management and conservation. Here, we use 14 years of data on colour-marked birds to investigate how conspecific density and habitat quality during the tropical non-breeding period interact to affect body condition and apparent annual survival of a long-distance migratory songbird, the American redstart (Setophaga ruticilla). Body condition and survival of birds in high-quality mangrove habitat declined as density increased. By contrast, body condition improved and survival did not vary as density increased in adjacent, lower quality scrub habitat, although mean condition and survival were almost always lower than in mangrove. High rainfall enhanced body condition in scrub but not in mangrove, suggesting factors such as food availability outweighed consequences of crowding in lower quality habitat. Thus, survival of overwintering redstarts in mangrove habitat, disproportionately males, appears to be regulated by a crowding mechanism based on density-dependent resource competition. Survival of individuals in scrub, mostly females, appears to be limited by density-independent environmental factors but not regulated by crowding. The contrasting effects of density and food limitation on individuals overwintering in adjacent habitats illustrate the complexity of processes operating during the non-breeding period for migratory animals, and emphasize the need for long-term studies of animals in multiple habitats and throughout their annual cycles.     

Corticosterone levels as indicators of habitat quality: effects of habitat segregation in a migratory bird during the non-breeding season

During the non-breeding season, many species of territorial migratory birds exhibit a non-random pattern of habitat distribution, with males and females occupying different habitats. In this study, we examined possible physiological consequences arising from such habitat segregation in one migrant passerine species, the American redstart (Setophaga ruticilla), on its non-breeding grounds in Jamaica, West Indies. For 2 years, we measured concentrations of corticosterone, at the time of capture (baseline) and 30 min after capture (profile of acute corticosterone secretion), in redstarts in two distinct habitats, one occupied predominately by males and one mostly by females. All redstarts in both habitat types exhibited similar concentrations of baseline corticosterone levels in fall (October), whereas in spring (March–April), redstarts in female-biased habitat exhibited significantly higher baseline levels regardless of age or sex. In fall, all individuals in both habitats exhibited significant increases in corticosterone concentration with capture and handling, but in spring only redstarts (both sexes) in male-biased habitat continued to exhibit acute corticosterone secretion. Redstarts in female-biased habitat had elevated baseline corticosterone levels and reduced acute corticosterone secretion. In spring, baseline corticosterone concentration was negatively correlated with body mass, suggesting muscle catabolism associated with high corticosterone concentrations or possibly that birds are leaner as a result of increased foraging effort. These results indicate that redstarts (primarily females) in female-biased habitats suffered a decline in physiological condition, which could in turn influence their departure schedules, migration patterns and even their condition and arrival schedules on the breeding grounds. Thus, segregation of populations into habitats of different quality during the non-breeding period may have ramifications throughout the annual cycle of such migratory species. Furthermore, these results show the usefulness of plasma corticosterone levels as indicators of physiological condition and thus habitat quality for birds during the non-breeding period. Received: 14 November 1997 / Accepted: 9 March 1998     

Experimental evidence for real-time song frequency shift in response to urban noise in a passerine bird

Research has shown that bird songs are modified in different ways to deal with urban noise and promote signal transmission through noisy environments. Urban noise is composed of low frequencies, thus the observation that songs have a higher minimum frequency in noisy places suggests this is a way of avoiding noise masking. Most studies are correlative and there is as yet little experimental evidence that this is a short-term mechanism owing to individual plasticity. Here we experimentally test if house finches (Carpodacus mexicanus) can modulate the minimum frequency of their songs in response to different noise levels. We exposed singing males to three continuous treatments: low–high–low noise levels. We found a significant increase in minimum frequency from low to high and a decrement from high to low treatments. We also found that this was mostly achieved by modifying the frequency of the same low-frequency syllable types used in the different treatments. When different low-frequency syllables were used, those sung during the noisy condition were longer than the ones sang during the quiet condition. We conclude that house finches modify their songs in several ways in response to urban noise, thus providing evidence of a short-term acoustic adaptation.     

Linking anti-predator behaviour and habitat quality: group effect in nest defence of a passerine bird

In habitats where the density of breeding individuals is higher, breeding success has been shown to increase with the number of close conspecific and heterospecific neighbours. However, the mechanisms linking habitat quality, group size of prey individuals and offspring defence are poorly known. In this field study, we examined the relationships between habitat quality and parental nest defence behaviour in the pied flycatcher (Ficedula hypoleuca). We found that mobbing is more intense in unmanaged forests where birds breed in more dense and diverse communities than in heavily managed young forests where heterospecific densities are lower. We also found that the mobbing activities of pied flycatchers breeding in unmanaged mature boreal forests attracted more neighbouring prey individuals than in nearby managed forests. This study shows that habitat quality-mediated effects might be responsible for the decreased group size of mobbing birds in managed forests, which may lead to less effective communal defence.     

Understanding testosterone variation in a tropical lek-breeding bird

Male reproductive coalitions, in which males cooperate to attract females, are a rare strategy among vertebrates. While some studies have investigated ultimate aspects of these relationships, little is known about the mechanistic role that hormones play in modulating cooperative behaviours. Here, we examined male testosterone variation in a tropical lekking bird, the wire-tailed manakin (Pipra filicauda), which exhibits cooperative male-male display coalitions. We found that testosterone levels in territorial males were comparable to those of temperate breeding birds, a surprising result given their environmental, social and reproductive dynamics. In addition, social status rather than plumage was a strong predictor of testosterone variation. Territorial males had significantly higher testosterone levels than did two other plumage classes of floater males, who do not hold territories. We hypothesize that testosterone variation plays an important role in the establishment of male dominance hierarchies (competition), while concurrently facilitating stable display partnerships (cooperation).     

Effects of habitat change and geographical variation on the bird communities of two Indonesian islands

The effects of selective logging and other types of forest exploitation on bird communities are often studied latitudinally, i.e. a contemporaneous comparison of disturbed and pristine areas. Such an approach assumes that before disturbance those areas were equivalent. By comparing communities at a single site before and after disturbance, a so called longitudinal approach does not make that assumption but such studies can be resource intensive. In this study we adopt a latitudinal approach to explore the effects of disturbance on birds, but pay specific attention to whether natural geographically-based variation in the forest ecosystem may be a major contributory factor equal to, or greater than, effects of disturbance. Bird census data were collected from two Indonesian islands, Sumba and Buru. On Sumba the differences between habitat types in terms of species richness, species accumulation rates, and numbers of birds were swamped by simple site differences between the forest blocks sampled. On Buru, disturbed areas were more diverse than mature forest but it was still not possible to discount the effects of natural variation between forest areas. Although the islands support bird faunas which are rather similar in size and origin, local species diversities and abundances were significantly greater on Sumba. Substituting space for time is a common strategy in ecological research but the results of such studies should be viewed with caution.     

Compared distribution within a disturbed fishpond ecosystem of breeding ducks and bird species indicators of habitat quality

The distribution of breeding ducks versus three other bird species (Mute Swan Cygnus olor, Black-headed Gull Larus ridibundus and Purple Heron Ardea purpurea) among waterbodies was investigated in the Dombes area, Eastern France, where breeding duck populations have undergone a severe decline following a large-scale transformation of meadow habitat into cropland. Higher Pochard Aythya ferina, Tufted Duck Aythya fuligula, Red-crested Pochard Netta rufina and Gadwall Anas strepera pair densities were recorded in fishponds where Black-headed Gulls were nesting. In these ponds however, nesting success (assessed by the number of broods divided by the number of pairs) was not significantly higher. Similarly, Pochard pair density was higher in ponds with a Purple Heron colony, but brood densities were not. We hypothesise that, in the study region, clutch concentration in the most attractive areas could compensate for the anti-predation effect of gull colonies or overwater nesting in shore vegetation. We could not confirm the expected negative impact of Mute Swan aggressive behaviour on duck distribution. Even though Mallard Anas platyrhynchos pair density was lower in ponds with breeding swans, we did not observe difference for Mallard broods. Moreover, Red-crested Pochard pair density and nesting success were higher in ponds where swans were breeding, probably as a consequence of shared habitat preferences.     

Genetic variation for the rate of recruitment of novel insect prey into the diet of a bird

Two lines of quail (Cotumix coturnix japonicus) were selected over three generations for the speed of their response to the red colour form of the two-spot ladybird beede (Adalia bipunctata), an aposematic, semi-palatable prey insect. One line was bred for fast recruitment of die new prey into the diet and die odier for slow recruitment. Differences between the lines suggested additive genetic variation. The birds' response to insect prey with different colour patterns and toxicities (brown beetles, green butterfly pupae, melanic two-spot ladybirds and toxic seven-spot ladybirds) demonstrated that die selection involved a specific response to novel prey. The results are discussed in relation to predator strategy and the evolution of aposematism.     

Maladaptive habitat selection of a migratory passerine bird in a human-modified landscape

In human-altered environments, organisms may preferentially settle in poor-quality habitats where fitness returns are lower relative to available higher-quality habitats. Such ecological trapping is due to a mismatch between the cues used during habitat selection and the habitat quality. Maladaptive settlement decisions may occur when organisms are time-constrained and have to rapidly evaluate habitat quality based on incomplete knowledge of the resources and conditions that will be available later in the season. During a three-year study, we examined settlement decision-making in the long-distance migratory, open-habitat bird, the Red-backed shrike (Lanius collurio), as a response to recent land-use changes. In Northwest Europe, the shrikes typically breed in open areas under a management regime of extensive farming. In recent decades, Spruce forests have been increasingly managed with large-size cutblocks in even-aged plantations, thereby producing early-successional vegetation areas that are also colonised by the species. Farmland and open areas in forests create mosaics of two different types of habitats that are now occupied by the shrikes. We examined redundant measures of habitat preference (order of settlement after migration and distribution of dominant individuals) and several reproductive performance parameters in both habitat types to investigate whether habitat preference is in line with habitat quality. Territorial males exhibited a clear preference for the recently created open areas in forests with higher-quality males settling in this habitat type earlier. Reproductive performance was, however, higher in farmland, with higher nest success, offspring quantity, and quality compared to open areas in forests. The results showed strong among-year consistency and we can therefore exclude a transient situation. This study demonstrates a case of maladaptive habitat selection in a farmland bird expanding its breeding range to human-created open habitats in plantations. We discuss the reasons that could explain this decision-making and the possible consequences for the population dynamics and persistence.     

Brood sex ratio variation in a cooperatively breeding bird

In cooperatively breeding species, the fitness consequences of producing sons or daughters depend upon the fitness impacts of positive (repayment hypothesis) and negative (local competition hypothesis) social interactions among relatives. In this study, we examine brood sex allocation in relation to the predictions of both the repayment and the local competition hypotheses in the cooperatively breeding long-tailed tit Aegithalos caudatus. At the population level, we found that annual brood sex ratio was negatively related to the number of male survivors across years, as predicted by the local competition hypothesis. At an individual level, in contrast to predictions of the repayment hypothesis, there was no evidence for facultative control of brood sex ratio. However, immigrant females produced a greater proportion of sons than resident females, a result consistent with both hypotheses. We conclude that female long-tailed tits make adaptive decisions about brood sex allocation.     

Presence-absence versus presence-only modelling methods for predicting bird habitat suitability

Habitat suitability models can be generated using methods requiring information on species presence or species presence and absence. Knowledge of the predictive performance of such methods becomes a critical issue to establish their optimal scope of application for mapping current species distributions under different constraints. Here, we use breeding bird atlas data in Catalonia as a working example and attempt to analyse the relative performance of two methods: the Ecological Niche factor Analysis (ENFA) using presence data only and Generalised Linear Models (GLM) using presence/absence data. Models were run on a set of forest species with similar habitat requirements, but with varying occurrence rates (prevalence) and niche positions (marginality). Our results support the idea that GLM predictions are more accurate than those obtained with ENFA. This was particularly true when species were using available habitats proportionally to their suitability, making absence data reliable and useful to enhance model calibration. Species marginality in niche space was also correlated to predictive accuracy, i.e. species with less restricted ecological requirements were modelled less accurately than species with more restricted requirements. This pattern was irrespective of the method employed. Models for wide‐ranging and tolerant species were more sensitive to absence data, suggesting that presence/absence methods may be particularly important for predicting distributions of this type of species. We conclude that modellers should consider that species ecological characteristics are critical in determining the accuracy of models and that it is difficult to predict generalist species distributions accurately and this is independent of the method used. Being based on distinct approaches regarding adjustment to data and data quality, habitat distribution modelling methods cover different application areas, making it difficult to identify one that should be universally applicable. Our results suggest however, that if absence data is available, methods using this information should be preferably used in most situations.     

Maintenance of sperm variation in a highly promiscuous wild bird

Postcopulatory sexual selection is an important force in the evolution of reproductive traits, including sperm morphology. In birds, sperm morphology is known to be highly heritable and largely condition-independent. Theory predicts, and recent comparative work corroborates, that strong selection in such traits reduces intraspecific phenotypic variation. Here we show that some variation can be maintained despite extreme promiscuity, as a result of opposing, copulation-role-specific selection forces. After controlling for known correlates of siring success in the superb fairy-wren (Malurus cyaneus), we found that (a) lifetime extra-pair paternity success was associated with sperm with a shorter flagellum and relatively large head, and (b) males whose sperm had a longer flagellum and a relatively smaller head achieved higher within-pair paternity. In this species extrapair copulations occur in the same morning, but preceding, pair copulations during a female's fertile period, suggesting that shorter and relatively larger-headed sperm are most successful in securing storage (defense), whereas the opposite phenotype might be better at outcompeting stored sperm (offense). Furthermore, since cuckolding ability is a major contributor to differential male reproductive output, stronger selection on defense sperm competition traits might explain the short sperm of malurids relative to other promiscuous passerines.     

Vertical habitat segregation as a mechanism for coexistence in sympatric rodents

Coexistence has been widely studied in small mammals and frequently is assumed to be facilitated by habitat segregation. Using live trapping and spool-and-line experiments, we analyzed habitat selection and segregation across multiples scales for Peromyscus leucopus and Ochrotomys nuttalli. At the habitat scale of a forest stand (∼1–100s ha) P. leucopus co-occurred at all sites where O. nuttalli was found, and we did not detect evidence of positive or negative associations or habitat segregation. However, O. nuttalli was restricted to early successional forests, and P. leucopus had significantly lower abundances in early successional forests than in other habitats. We found similar patterns at the mesohabitat scale of the study site (400 m²). O. nuttalli abundance increased with increasing shrub and tree densities, while increases in P. leucopus abundance were associated with open understories. At the microhabitat scale of the individual movement trail, we found vertical segregation. Movement trails for O. nuttalli were at significantly higher elevation (mean height = 142.93 ± 37.10 cm) than P. leucopus trails (mean height = 15.4 ± 4.98 cm; F-value = 35.29, p < 0.001). We concluded that microhabitat segregation was driven by differential use of vertical space for movement and foraging. We suggest O. nuttalli is superior to P. leucopus in its ability to acquire food especially in shrubby subcanopies where few acorns are available. However, P. leucopus is superior in its ability to forage and avoid predators.     

Traditional medicines as a mechanism for driving research innovation in Africa

The outcomes from recent high profile deliberations concerning African health research and economic development all point towards the need for a mechanism to support health innovation on the continent. The mission of the African Network for Drugs and Diagnostics Innovation (ANDI), is to promote and sustain African-led health product innovation to address African public health needs through the assembly of research networks, and building of capacity to support human and economic development. ANDI is widely viewed as the vehicle to implementing some of these recommendations. There is tremendous opportunity for Africa, to leverage the expertise in natural products and traditional medicines in support of this objective to kick-start innovation. This report highlights key recommendations that have emerged through expert forums convened by ANDI on the challenges, opportunities and prospects for investing in this important area of research.     

Traditional medicines as a mechanism for driving research innovation in Africa

Background

Malaria remains a serious problem in French Guiana, which is at potential risk for drought linked with the El Niño Event and where there could be a risk of malaria epidemic after the onset of an El Niño event.

Methods

A time series analysis using ARIMA was developed to investigate temporal correlations between the monthly Plasmodium falciparum case numbers and El Niño Southern Oscillation (ENSO) as measured by the Southern Oscillation Index (SOI) at the Cayenne General Hospital between 1996 and 2009.

Results

The data showed a positive influence of El Niño at a lag of three months on P. falciparum cases (p < 0.001). The incorporation of SOI data in the ARIMA model reduced the AIC by 4%.

Conclusions

Although there is a statistical link, the predictive value of ENSO to modulate prevention intervention seems marginal in French Guiana. However, additional work should refine the regional dependence of malaria on the ENSO state.     

Plumage quality mediates a life-history trade-off in a migratory bird

Background

Moult is one of the most costly activities in the annual cycle of birds and most avian species separate moult from other energy-demanding activities, such as migration. To this end, young birds tend to undergo the first post-juvenile moult before the onset of migration, but in some species the time window for the pre-migratory feather replacement is too narrow. We hypothesized that in such species an increased investment in the structural quality of juvenile feathers may allow to retain juvenile plumage throughout the entire migratory period and delay moult until arriving at wintering grounds, thus avoiding a moult-migration overlap.

Methods

The effect of juvenile plumage quality on the occurrence of moult-migration overlap was studied in a migratory shorebird, the common snipe Gallinago gallinago. Ca. 400 of first-year common snipe were captured during their final stage of autumn migration through Central Europe. The quality of juvenile feathers was assessed as the mass-length residuals of retained juvenile rectrices. Condition of migrating birds was assessed with the mass of accumulated fat reserves and whole-blood hemoglobin concentration. Path analysis was used to disentangle complex interrelationships between plumage quality, moult and body condition.

Results

Snipe which grew higher-quality feathers in the pre-fledging period were less likely to initiate moult during migration. Individuals moulting during migration had lower fat loads and hemoglobin concentrations compared to non-moulting birds, suggesting a trade-off in resource allocation, where energetic costs of moult reduced both energy reserves available for migration and resources available for maintenance of high oxygen capacity of blood.

Conclusions

The results of this study indicate that a major life-history trade-off in a migratory bird may be mediated by the quality of juvenile plumage. This is consistent with a silver spoon effect, where early-life investment in feather quality affects future performance of birds during migration period. Our results strongly suggest that the juvenile plumage, although retained for a relatively short period of time, may have profound consequences for individuals’ fitness.