The Influence of Habitat Complexity on Reef Fish Communities in the Northeastern Gulf of Mexico

Several previous studies have attempted to correlate habitat complexity and reef fish species diversity. These studies have mostly examined natural reef systems, but results differed. To examine this relation, we built 1 m² habitats with 20 replicates of five complexity levels from July to August 2001 in the northeastern Gulf of Mexico (n=100). In June and July 2002, we built new habitats using the 2001 design, but also added a sixth complexity level (n=120). In order of increasing complexity these included: cage, shell, cage-shell, block-shell, cage-block-shell, and shell-block-pyramid habitats. Most fish in both years were juveniles and included species common to reef structures in the northeastern Gulf of Mexico. In 2001, we identified 26 fish species, and the dominant species was red snapper, Lutjanus campechanus (41%), followed by rock sea bass, Centropristis philadelphica (23%), and sand perch, Diplectrum spp. (14%). In 2002 we identified 36 species, and the dominant species was tomtate, Haemulon aurolineatum (36%), followed by Diplectrum spp. (19%), and L. campechanus (13%). In 2001, species diversity and richness were significantly (P<0.05) higher on more complex habitats (H′=1.7, S=11–12) compared to less complex habitats (H′=0.8–1.0, S=4–9). In 2002, patterns among diversity, richness and reef complexity were less apparent with only the least complex habitats shell and cage showing significantly lower values. In both years, multidimensional scaling grouped by complexity levels with cage and shell habitats showing the clearest separation from other habitat types. Also, with few exceptions (only 8%) analysis of similarities showed significant (P<0.05) differences in fish communities across complexity levels. Although community composition varied between years, this study provided evidence to support the hypothesis that habitat complexity increased reef fish species diversity.     

Relative Importance of Coral Cover,Habitat Complexity and Diversity in Determining the Structure of Reef Fish Communities

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat characteristics are often not distinguished. Here, we investigate the strength of the relationships between these habitat features and local fish diversity, abundance and community structure in the lagoon of Lizard Island, Great Barrier Reef. In a spatial comparison using sixty-six 2m² quadrats, fish species richness, total abundance and community structure were examined in relation to a wide range of habitat variables, including topographic complexity, habitat diversity, coral diversity, coral species richness, hard coral cover, branching coral cover and the cover of corymbose corals. Fish species richness and total abundance were strongly associated with coral species richness and cover, but only weakly associated with topographic complexity. Regression tree analysis showed that coral species richness accounted for most of the variation in fish species richness (63.6%), while hard coral cover explained more variation in total fish abundance (17.4%), than any other variable. In contrast, topographic complexity accounted for little spatial variation in reef fish assemblages. In degrading coral reef environments, the potential effects of loss of coral cover and topographic complexity are often emphasized, but these findings suggest that reduced coral biodiversity may ultimately have an equal, or greater, impact on reef-associated fish communities.     

Ecological Restoration and Large-Scale Ecological Disturbance: The Effects of Drought on the Response by Fish to a Habitat Restoration Experiment

Human‐induced erosion regularly delivers massive quantities of fine sediments into streams and rivers forming large static bodies of sediment known as sand slugs, which smother in‐stream habitat, alter community structure, and decrease biodiversity. Sand slugs are widespread in parts of southeastern Australia as well as in many other parts of the world, and there is now considerable interest in restoring such affected streams. The reintroduction of large timber is widely suggested as a strategy for restoring habitat complexity, but this has rarely been tested in sand slug–affected streams. We examined the response of fish populations to wood addition to two streams in southeastern Australia that have been impacted by sand slugs. Manipulated sites (three per treatment) had either one or four timber structures added, and these sites were compared with (three) unmanipulated (control) sites before and after the manipulation occurred. Despite a supraseasonal drought during the study, we observed short‐term increases in the abundance of Mountain galaxias (Galaxias olidus) at the four‐structure sites, while both the four‐structure and the one‐structure treatments appeared to buffer against drought‐induced declines in two other species, River blackfish (Gadopsis marmoratus) and Southern pygmy perch (Nannoperca australis), relative to controls. However, drought eventually caused the complete loss of surface water from these streams and the loss of fish from both manipulated and unmanipulated sites. Thus, although the study supports the use of timber structures as a means of increasing local fish abundances, these beneficial effects were, in these streams, contingent upon permanency of flow. Because sedimentation has depleted the number of permanent refuge pools in these creeks, recovery rates of the fauna (i.e., resilience) are likely to be slow. We therefore conclude that in streams subjected to frequent disturbance, restoring refugia may be as, if not more, important as restoring what we term residential habitat.     

Habitat Use of Fish Communities in A Virginia Stream System

Fish habitat use during summer was examined at micro- and meso-levels, to determine species associations in the upper Roanoke River watershed, Virginia. Based on multivariate-mesohabitat analysis and examination of mean microhabitat use, seven habitat-use guilds were apparent. These included four rheophilic (fast-riffle, riffle/run, fast-generalist, and shallow-rheophilic) and three limnophilic guilds (pool/run, open-pool, and pool-cover) that were reasonably robust across two river segments and two years. Although simple-hydraulic, bottom-topographic, and turbulence variables all segregated fish habitat-use guilds, turbulence variables were redundant with simple-hydraulic variables, substratum use by limnophilic fishes was related to availability, and only one guild consistently selected high cover levels. At the family level, suckers, darters, and especially minnows were notable for occupying several habitat-use guilds, because of species differences in habitat preferences. Such formulation of guilds can simplify habitat-impact analyses in biodiverse, warmwater streams, via focus on habitat needs of guilds rather than on individual species.     

Understanding the Spatio-Temporal Response of Coral Reef Fish Communities to Natural Disturbances: Insights from Beta-Diversity Decomposition

Understanding how communities respond to natural disturbances is fundamental to assess the mechanisms of ecosystem resistance and resilience. However, ecosystem responses to natural disturbances are rarely monitored both through space and time, while the factors promoting ecosystem stability act at various temporal and spatial scales. Hence, assessing both the spatial and temporal variations in species composition is important to comprehensively explore the effects of natural disturbances. Here, we suggest a framework to better scrutinize the mechanisms underlying community responses to disturbances through both time and space. Our analytical approach is based on beta diversity decomposition into two components, replacement and biomass difference. We illustrate this approach using a 9-year monitoring of coral reef fish communities off Moorea Island (French Polynesia), which encompassed two severe natural disturbances: a crown-of-thorns starfish outbreak and a hurricane. These disturbances triggered a fast logistic decline in coral cover, which suffered a 90% decrease on all reefs. However, we found that the coral reef fish composition remained largely stable through time and space whereas compensatory changes in biomass among species were responsible for most of the temporal fluctuations, as outlined by the overall high contribution of the replacement component to total beta diversity. This suggests that, despite the severity of the two disturbances, fish communities exhibited high resistance and the ability to reorganize their compositions to maintain the same level of total community biomass as before the disturbances. We further investigated the spatial congruence of this pattern and showed that temporal dynamics involved different species across sites; yet, herbivores controlling the proliferation of algae that compete with coral communities were consistently favored. These results suggest that compensatory changes in biomass among species and spatial heterogeneity in species responses can provide further insurance against natural disturbances in coral reef ecosystems by promoting high levels of key species (herbivores). They can also allow the ecosystem to recover more quickly.     

Influence of Habitat Structure on Pomacentrus sulfureus, A Western Indian Ocean Reef Fish

The influence of habitat on the distribution and abundance of Pomacentrus sulfureus was investigated on coral reefs in Zanzibar. Fish censuses were conducted using the simultaneous belt-transect method and substrate data were gathered using a point-base method. Densities of juvenile and adult P. sulfureus were examined in relation to habitat composition and structure. The influence of habitat structure on coral reef fishes remains debated and has been obscured by the various methods, scales and levels of detail that have been used. In this study, we compared two measures of structural complexity. One was a contour measure (rugosity) and the other was the percent cover of branching structures. Both were applied on the same scale but differed in the level of detail. P. sulfureus was distributed in an uneven pattern around Zanzibar Island and the distribution appeared to reflect local and regional differences in habitat structure. Multiple regression models identified relations between juvenile and adult P. sulfureus abundance and specific habitat features. The majority of the variation in juvenile numbers was attributed to percent cover of branching structures, the high-resolution measure. However, adult abundance was unrelated to this measure. Rugosity, the low-resolution measure of structural complexity, appeared to influence neither adult nor juvenile P. sulfureus. The best predictor of adult abundance was substrate diversity (inverse relationship), which, however, did not contribute to the proportion of explained variation in juvenile abundance. In addition, there was a weak positive relationship between adult abundance and the number of hard coral growth forms present. The results indicate that P. sulfureus exhibit an ontogenetic shift in habitat use. However, the regression models also revealed that adults per se have a positive effect on juvenile numbers. We suggest that the limited habitat use of juvenile P. sulfureus is contained within that of conspecific adults, and that juveniles are likely to adopt more general habitat associations as they grow.     

The Structures and Dynamics of Fish Communities in an Okinawan Coral Reef: Effects of Coral-based Habitat Structures at Sites with Rocky and Sandy Sea Bottoms

Although there have been many studies on ecological factors responsible for the organization of reef fish communities, most of the studies have focused on isolated habitats. However, findings from isolated habitats cannot necessarily be applied to fish communities in other habitats (e.g., a continuous habitat). In this study, therefore, we examined the structures of fish communities (abundance, species richness and species composition), and the dynamics of fish communities (seasonal changes in abundance, species richness and species composition) over a 2-year period in two different habitats (continuous habitat and isolated habitat) in an Okinawan coral reef. We established eight permanent quadrats (8m × 8m) on a rocky reef flat (continuous habitat) and rock reef patches surrounded by a sandy sea bottom (isolated habitat). The abundance and species richness of fishes such as pomacentrids, labrids, chaetodontids and acanthurids were greater in quadrats located in the continuous habitat, whereas those of blenniids, gobiids and mullids were greater in quadrats located in the isolated habitat. This caused marked differences between the fish community structure at the two sites. Seasonal and annual changes in fish community structure were relatively small at the continuous habitat site (>0.7 similarity based on C index) but were large at the isolated habitat site (C < 0.4), indicating that the fish community structure was relatively stable at the continuous habitat site but unstable at the isolated habitat site throughout the study period. Spatial differences between the fish community structures in the four quadrats at the continuous habitat site were small (C > 0.65 in most sites), but these differences were large at the isolated habitat site (C < 0.4). Our findings suggest that habitat structure (spatial arrangement of habitats) affects both spatial and seasonal differences in the reef fish community structure. The results also suggest that the main mechanisms underlying organization of reef fish communities in continuous and isolated habitats are different.     

Reef Odor: A Wake Up Call for Navigation in Reef Fish Larvae

The behavior of reef fish larvae, equipped with a complex toolbox of sensory apparatus, has become a central issue in understanding their transport in the ocean. In this study pelagic reef fish larvae were monitored using an unmanned open-ocean tracking device, the drifting in-situ chamber (DISC), deployed sequentially in oceanic waters and in reef-born odor plumes propagating offshore with the ebb flow. A total of 83 larvae of two taxonomic groups of the families Pomacentridae and Apogonidae were observed in the two water masses around One Tree Island, southern Great Barrier Reef. The study provides the first in-situ evidence that pelagic reef fish larvae discriminate reef odor and respond by changing their swimming speed and direction. It concludes that reef fish larvae smell the presence of coral reefs from several kilometers offshore and this odor is a primary component of their navigational system and activates other directional sensory cues. The two families expressed differences in their response that could be adapted to maintain a position close to the reef. In particular, damselfish larvae embedded in the odor plume detected the location of the reef crest and swam westward and parallel to shore on both sides of the island. This study underlines the critical importance of in situ Lagrangian observations to provide unique information on larval fish behavioral decisions. From an ecological perspective the central role of olfactory signals in marine population connectivity raises concerns about the effects of pollution and acidification of oceans, which can alter chemical cues and olfactory responses.     

Non-Random Variability in Functional Composition of Coral Reef Fish Communities along an Environmental Gradient

Changes in the coral reef complex can affect predator-prey relationships, resource availability and niche utilisation in the associated fish community, which may be reflected in decreased stability of the functional traits present in a community. This is because particular traits may be favoured by a changing environment, or by habitat degradation. Furthermore, other traits can be selected against because degradation can relax the association between fishes and benthic habitat. We characterised six important ecological traits for fish species occurring at seven sites across a disturbed coral reef archipelago in Indonesia, where reefs have been exposed to eutrophication and destructive fishing practices for decades. Functional diversity was assessed using two complementary indices (FRic and RaoQ) and correlated to important environmental factors (live coral cover and rugosity, representing local reef health, and distance from shore, representing a cross-shelf environmental gradient). Indices were examined for both a change in their mean, as well as temporal (short-term; hours) and spatial (cross-shelf) variability, to assess whether fish-habitat association became relaxed along with habitat degradation. Furthermore, variability in individual traits was examined to identify the traits that are most affected by habitat change. Increases in the general reef health indicators, live coral cover and rugosity (correlated with distance from the mainland), were associated with decreases in the variability of functional diversity and with community-level changes in the abundance of several traits (notably home range size, maximum length, microalgae, detritus and small invertebrate feeding and reproductive turnover). A decrease in coral cover increased variability of RaoQ while rugosity and distance both inversely affected variability of FRic; however, averages for these indices did not reveal patterns associated with the environment. These results suggest that increased degradation of coral reefs is associated with increased variability in fish community functional composition resulting from selective impacts on specific traits, thereby affecting the functional response of these communities to increasing perturbations.     

Human,Oceanographic and Habitat Drivers of Central and Western Pacific Coral Reef Fish Assemblages

Coral reefs around US- and US-affiliated Pacific islands and atolls span wide oceanographic gradients and levels of human impact. Here we examine the relative influence of these factors on coral reef fish biomass, using data from a consistent large-scale ecosystem monitoring program conducted by scientific divers over the course of >2,000 hours of underwater observation at 1,934 sites, across ~40 islands and atolls. Consistent with previous smaller-scale studies, our results show sharp declines in reef fish biomass at relatively low human population density, followed by more gradual declines as human population density increased further. Adjusting for other factors, the highest levels of oceanic productivity among our study locations were associated with more than double the biomass of reef fishes (including ~4 times the biomass of planktivores and piscivores) compared to islands with lowest oceanic productivity. Our results emphasize that coral reef areas do not all have equal ability to sustain large reef fish stocks, and that what is natural varies significantly amongst locations. Comparisons of biomass estimates derived from visual surveys with predicted biomass in the absence of humans indicated that total reef fish biomass was depleted by 61% to 69% at populated islands in the Mariana Archipelago; by 20% to 78% in the Main Hawaiian islands; and by 21% to 56% in American Samoa.     

Short‐term Costs and Benefits of Habitat Complexity for a Territorial Fish

An increase in habitat complexity is thought to decrease visibility and the territory size of visually oriented animals. Hence, the addition of physical structure has been viewed as a useful restoration technique to increase the density of territorial species, particularly in stream fishes. However, a decrease in territory size may have a negative effect on the fitness of individual organisms. We attempted to quantify some of the positive and negative effects of increasing habitat structure on the behaviour and growth rate of wild young‐of‐the‐year (YOY) Atlantic salmon. Fish were exposed to one of two habitat treatments in mesh enclosures in Catamaran Brook, New Brunswick: a gravel substrate (low complexity) or a gravel substrate with boulders added (high complexity). Wild‐caught individuals were tagged, weighed and measured before being stocked at densities of 1·m^?2 for 7‐d trials. While fish from high‐complexity treatments benefited from lower rates of aggression, they also had lower foraging rates and smaller territories compared to those in low‐complexity treatments. Specific growth rate, however, did not differ significantly between treatments. While the addition of structure to a habitat may be beneficial at the population level in terms of an increase in population density, our results suggested that individual fish may pay some short‐term costs in these environments. Further research is needed to evaluate the longer term costs and benefits of adding structure to improve the habitat quality for stream salmonids.     

Mangrove Habitat Use by Juvenile Reef Fish: Meta-Analysis Reveals that Tidal Regime Matters More than Biogeographic Region

Identification of critical life-stage habitats is key to successful conservation efforts. Juveniles of some species show great flexibility in habitat use while other species rely heavily on a restricted number of juvenile habitats for protection and food. Considering the rapid degradation of coastal marine habitats worldwide, it is important to evaluate which species are more susceptible to loss of juvenile nursery habitats and how this differs across large biogeographic regions. Here we used a meta-analysis approach to investigate habitat use by juvenile reef fish species in tropical coastal ecosystems across the globe. Densities of juvenile fish species were compared among mangrove, seagrass and coral reef habitats. In the Caribbean, the majority of species showed significantly higher juvenile densities in mangroves as compared to seagrass beds and coral reefs, while for the Indo-Pacific region seagrass beds harbored the highest overall densities. Further analysis indicated that differences in tidal amplitude, irrespective of biogeographic region, appeared to be the major driver for this phenomenon. In addition, juvenile reef fish use of mangroves increased with increasing water salinity. In the Caribbean, species of specific families (e.g. Lutjanidae, Haemulidae) showed a higher reliance on mangroves or seagrass beds as juvenile habitats than other species, whereas in the Indo-Pacific family-specific trends of juvenile habitat utilization were less apparent. The findings of this study highlight the importance of incorporating region-specific tidal inundation regimes into marine spatial conservation planning and ecosystem based management. Furthermore, the significant role of water salinity and tidal access as drivers of mangrove fish habitat use implies that changes in seawater level and rainfall due to climate change may have important effects on how juvenile reef fish use nearshore seascapes in the future.     

Influence of Coral Reef Rugosity on Fish Communities in Marine Reserves Around Lombok Island,Indonesia

Environmental Biology of Fishes - Coral reef structural form is widely considered a key factor with respect to the availability of shelter and foraging spaces for fishes and invertebrates. However,...     

Natural Shorelines Promote the Stability of Fish Communities in an Urbanized Coastal System

Habitat loss and fragmentation are leading causes of species extinctions in terrestrial, aquatic and marine systems. Along coastlines, natural habitats support high biodiversity and valuable ecosystem services but are often replaced with engineered structures for coastal protection or erosion control. We coupled high-resolution shoreline condition data with an eleven-year time series of fish community structure to examine how coastal protection structures impact community stability. Our analyses revealed that the most stable fish communities were nearest natural shorelines. Structurally complex engineered shorelines appeared to promote greater stability than simpler alternatives as communities nearest vertical walls, which are among the most prevalent structures, were most dissimilar from natural shorelines and had the lowest stability. We conclude that conserving and restoring natural habitats is essential for promoting ecological stability. However, in scenarios when natural habitats are not viable, engineered landscapes designed to mimic the complexity of natural habitats may provide similar ecological functions.     

Seasonal and Habitat Influences on Fish Communities within the Lower Yasuni River Basin of the Ecuadorian Amazon

We sampled lagoon, river and forest stream habitats during the rising water, wet, falling water, and dry seasons in the lowland region of the Yasuni National Reserve in the Ecuadorian Amazon. We collected 195 species, increasing the current number of species for the Napo River basin to approximately 562. The steady rate of species accumulation per sample suggests that the fish fauna is still undersampled. Lagoon, river and forest stream fish communities are highly diverse and variable, composed of common species found within several habitats, of characteristic species found throughout the year, and of seasonally migrating species. Characteristic lagoon species were mainly the curimatids Curimata vittata, Psectrogaster amazonica, Potamorhina altamazonica, P. latior and Cyphocharax plumbeus. The characins Hyphessobrycon copelandi and Hemigrammus cf. lunatus and the catfishes Nemadoras humeralis, Pimelodella sp. C and Sorubim sp. A were characteristic river species. Characteristic forest stream species included Hoplias malabaricus, Hyphessobrycon copelandi, Pimelodella sp. B and Sternopyugus macrurus. During the dry season, lagoon and river habitats had the highest number of individuals and species, as fishes were concentrated in decreasing habitat area. In contrast, stream habitats had the highest species richness and abundance during the rising water and falling water seasons. Species collected included vital food fishes and seasonal migrants. The migratory catfishes Brachyplatystoma vaillantii, Hemisorubim platyrhynchos, Platynematichthys notatus, Platystomatichthys sturio and Sorubim lima were collected during the falling water season, which suggests that these species may begin migrating earlier than expected. These findings highlight the importance of seasonality for both adequately assessing aquatic biodiversity and for developing research and conservation programs encompassing whole river ecosystems.     

Structure of Littoral-zone Fish Communities in Relation to Habitat, Physical, and Chemical Gradients in a Southern Reservoir

How the distribution and abundance of organisms vary across environmental gradients can reveal factors important in structuring aquatic communities. We sampled the littoral-zone fish community in a large reservoir (Lake Texoma) on the Texas–Oklahoma (U.S.A.) border that has pronounced environmental gradients from up- to downlake and between major tributary arms. Our objective was to evaluate the predictability of the littoral-zone fish-community structure from a suite of environmental variables. A stepwise multiple-regression model, with environmental factors at independent variables, explained 64% of the variation in fish species richness across sample sites. The number of species was positively associated with water-column productivity and total Kjedahl nitrogen, and negatively associated with Secchi depth and benthic productivity. Canonical correspondence analysis, with environmental factors as independent variables, explained 63% of the variation in fish-community structure across sites. Equal proportions of the variation in community structure were explained by variables that have strong gradients within the reservoir (e.g., Secchi depth and water-column productivity) and those that represent local habitat variables (e.g., shoreline aspect and substrate type).     

Development of a Fish Based Lake Typology for Natural Austrian Lakes >50 ha Based on the Reconstructed Historical Fish Communities

Based on the reconstructed native fish communities all natural Austrian lakes >50 ha (n = 43) were classified into four groups using cluster analysis methods. Sentinel species (i.e. species with highest discriminating value for lake types and characteristic for a specific lake group) and type specific fish species (accompanying species with additional value for characterising lake groups) were defined by a newly developed index and by similarity analysis. The first group included 16 lakes of high altitude, small surface area and low fish species number with arctic char as a sentinel species. The second group (n = 10) was characterized by intermediate altitude, large surface area and high maximum water depth with the minnow as sentinel species. The third group contained 14 lakes with low maximum water depths and a long retention time. For this group the bleak was found as a sentinel species. The lakes of the eastern part of Austria represented the last group (n = 3) and were characterized by low altitude and very shallow water depth with pike‐perch as a sentinel species. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)