天然线性二芳基庚烷类化合物

本文对目前已发现的天然线性二芳基庚烷类化合物在植物中的分布及其结构特征,生源合成途径和药理学研究进展作一简要的综述。     

二氢呋喃喹啉酮类化合物的抑菌效果

为了解二氢呋喃喹啉酮类化合物对四种细菌的抑制作用,选用大肠杆菌,金色葡萄球菌,绿脓杆菌,枯草杆菌作为测试菌;选用牛肉膏蛋白胨作为培养基;以化学合成的二氢呋喃喹啉酮化合物a～f为测试对象,采用抑菌圈试验测定样品抗菌活性,并根据所得抑菌率求得MIC50值。结果表明:对于大肠杆菌,金色葡萄球菌,枯草杆菌,六个化合物的抑菌效果均一般。但是化合物f(含甲氧基)对于绿脓杆菌的抑菌效果尤其出色,远高于对大肠杆菌、金葡杆菌、枯草杆菌的抑菌效果,具有明显的选择性。     

非一线抗结核药物耐药机制及耐药性诊断研究进展

结核病(Tuberculosis, TB)至今仍是世界三大传染疾病之一。2014年,TB导致的死亡人数已经超过HIV。二线抗TB药物是临床治疗耐多药TB(Multidrug-resistant TB, MDR-TB)的主要药物,然而某些MDR-TB患者由于未及时诊断、治疗方案不合理、所处区域医疗条件差等原因,逐渐发展成为广泛耐药TB(Extensively drug-resistant TB, XDR-TB),使治疗更加困难,其死亡率甚至与肺癌接近。目前结核分枝杆菌(Mycobacterium tuberculosis)的耐药性机制研究已经转向非一线药物,如二线、三线和一些新研发的抗TB药物,揭示这些非一线药物的耐药机制对于耐药TB的治疗和新型抗TB药物的研发具有重要意义。本文对目前临床上使用的主要非一线药物的耐药机制研究进行了综述,并对目前常用的TB耐药性诊断方法的优缺点进行了归纳比较。     

天然大环二芳基庚烷类化合物的研究概况

本文对目前已经发现的天然大环二芳基庚烷类化合物在植物中的分布及结构特征、生物合成和药理学研究进展进行了综述.     

1，5-二芳基戊烷类化合物生物活性与结构关系的研究进展

本文对目前已经发现的天然1,5-二芳基戊烷类化合物在植物中的分布、结构特征、生物合成及其改构化合物的结构和生物活性作一简要综述.     

二代测序技术在结核分枝杆菌研究中的应用进展

结核病是由结核分枝杆菌引起的全球第二大传染病。二代测序技术为从基因组水平研究结核分枝杆菌提供了重要的研究方法。本文从结核病流行病学、结核分枝杆菌耐药和进化及相关生物信息学等方面,介绍二代测序技术在结核分枝杆菌研究中的应用进展。     

抗结核分枝杆菌RpfB结构域单克隆抗体的制备及鉴定

目的:制备抗结核分枝杆菌Rpf B结构域单克隆抗体。方法:将p PRO-EXHT-Rpf B domain原核表达载体接种于大肠杆菌DH5中,用IPTG诱导表达Rpf B结构域蛋白,以纯化的Rpf B结构域蛋白作为免疫原,皮下包埋免疫小鼠3次,每次间隔2周;分离小鼠的脾细胞,与Sp2/0细胞融合,克隆化制备抗Rpf B结构域单抗,ELISA检测其效价,鉴定其特异性和相对亲和力,观察制备的抗Rpf B结构域单抗对Rpf家族其他蛋白的识别能力及其对结核分枝杆菌和藤黄微球菌的生长抑制作用。结果:制备了3株抗Rpf B结构域单抗,特异性高,亲和力较强,均能特异性识别Rpf B结构域。经小鼠腹腔注射制备腹水并纯化,获得了较高纯度的单抗,所制备的抗Rpf B结构域多肽的单克隆抗体可以识别多种Rpf样蛋白及其结构域蛋白。在抗体滴度为1∶1000时可有效抑制Rpf B结构域对结核分枝杆菌H37Ra和藤黄微球菌的生长促进作用,提示抗Rpf B结构域单抗可能会抑制进入机体内生长停滞或潜伏感染的结核分枝杆菌的再次激活,可能具有预防隐性感染复发的作用。结论:抗Rpf B结构域单抗的制备为进一步研究Rpf B结构域的生物学和免疫特性提供了实验工具。     

新型抗结核活性化合物H37Ra的耐药菌筛选及其菌落表型

ATB-152E和ATB-152J为本实验室前期研究获得的具有良好抗结核活性的两种结构类似的小分子化合物,本文就其作用靶标及耐药机制进行探索。采用含药平板涂板筛选以及平板划线培养法逐步提高化合物浓度,分别筛选出结核分枝杆菌ATB-152E和ATB-152J耐药菌株。选取有代表性的耐药菌株,用微孔法测定结核分枝杆菌的最小抑菌浓度,分别对它们的菌落形态、生物膜形成等表型进行观察并与野生株进行比较。通过不断提高化合物筛选浓度最终筛选到ATB-152E耐药菌株17株、ATB-152J耐药菌株15株,这两种化合物的耐药频率均为10^－7。生长表型结果显示,与野生株结核分枝杆菌相比,ATB-152E耐药菌菌落褶皱变多,ATB-152J耐药菌菌落形态更为扁平,褶皱变少。耐药菌的生物膜形成所需时间与野生株也存在差异,提示活性化合物耐药菌的突变可能导致细菌脂质代谢异常。ATB-152E和ATB-152J耐药菌的获得,为后续深入探索这两种具有良好抗结核活性化合物的作用机制奠定了基础。     

莽草酸芳构化制备二芳基胺类化合物

以莽草酸为起始物,经酯化及IBX氧化制备得到3-脱氢莽草酸甲酯。在甲醇溶剂中及对甲苯磺酸的催化下,3-脱氢莽草酸甲酯与芳香伯胺类化合物发生缩合-脱水芳构化反应,制备得到一类二芳基胺类化合物,即3-芳胺基-4-羟基苯甲酸甲酯类化合物。该方法以廉价的可再生资源为起始物,具有操作简单、条件温和、收率高等优点,是制备二芳基胺类化合物的一种有效途径。     

新型抗结核蛋白亚单位疫苗Ag85A-γ干扰素的免疫效果评价

本研究旨在评价新型抗结核融合蛋白亚单位疫苗Ag85A-γ干扰素(Ag85A-IFN-γ)的免疫效果.在成功表达并纯化了去除Ag85A信号肽的融合蛋白Ag85A-IFN-γ后,将其与免疫佐剂二甲基三十六烷基铵(DDA)混合,皮下免疫C57BL/6小鼠3次,每次间隔2周,末次免疫2周后进行效果评价.采用酶联免疫吸附试验(ELISA)检测血清中IgG、IgG1和IgG2c水平.结果显示,融合蛋白Ag85A-IFN-γ组的IgG水平均高于单独抗原组,且融合蛋白组IgG2c/IgG1 比值显著高于对照组,表明融合蛋白能刺激宿主产生更强烈的体液免疫反应,更倾向于激发T辅助细胞1型(Th1型)免疫反应.流式细胞术检测特异性CD4+和CD8+ T细胞比例,发现Ag85A-IFN-γ组CD8+/CD4+最高,显示该融合蛋白能显著增强CD8+ T细胞增殖.上述结果表明,融合蛋白Ag85A-IFN-γ有望成为有效的新型抗结核融合蛋白亚单位疫苗.     

以结核分枝杆菌丙氨酸消旋酶为靶点的抗结核药物筛选及其与D-环丝氨酸的共结晶

【目的】阐释结核分枝杆菌丙氨酸消旋酶原有抑制剂D-环丝氨酸的作用机制,建立丙氨酸消旋酶抑制剂的高通量筛选模型,并用此模型筛选到新的抑制剂分子。【方法】将结核分枝杆菌中丙氨酸消旋酶基因克隆到pET-28a表达载体中,在大肠杆菌BL21(DE3)菌株中得到可溶性的大量表达。表达后的蛋白质通过镍离子亲和层析和阴离子交换层析得到纯化,一方面将纯化后的蛋白和D-环丝氨酸共结晶以解析其抑制剂作用的分子机制。另一方面建立并优化丙氨酸消旋酶抑制剂的高通量筛选体系,用D-环丝氨酸验证体系的可行性并用该体系筛选本实验室药物库中的384种小分子片段、792种化合物及2 200种中药样品。【结果】得到的共晶晶体衍射能力2.50?,晶体空间群为P41212,晶胞参数a=b=163.92?,c=57.44?。结构分析表明,D-环丝氨酸进入活性位点之后与磷酸吡哆醛相互作用形成磷酸吡哆胺,使得磷酸吡哆醛的C4?原子与K42之间的相互作用被破坏,从而改变了结核分枝杆菌丙氨酸消旋酶的活性中心氢键网络。同时经D-环丝氨酸验证建立的抑制剂筛选体系可行,获得阳性化合物分子2个。【结论】依据我们所建立的高通量筛选体系可以有效地为结核分枝杆菌丙氨酸消旋酶筛选到可信的抑制剂分子。     

生长环境对结核分枝杆菌胁迫作用的研究进展

高传染性结核病是由结核分枝杆菌引起的慢性消耗性疾病,病死率较高,备受全球关注。结核分枝杆菌是一种胞内寄生菌,通过呼吸道感染宿主,感染期间寄居肺部形成肉芽肿。肉芽肿或者免疫系统施加的环境压力,比如低pH、缺乏营养(缺铁)、缺氧等使结核分枝杆菌进入休眠状态,从而影响结核分枝杆菌的正常生长和抗生素的疗效。结核病治疗周期长,易产生耐药性,因此迫切需要研发新的药物以提升治疗效果。本文通过3个主要具有胁迫作用的生长环境因素综述了近年来发现的结核分枝杆菌相关调控因子和药物新靶点,为疫苗研究及新药物设计提供理论基础和研究依据。     

一株白腐菌的食用安全性初步评价

本研究选取了一株白腐菌模式菌株进行了小鼠急性毒性试验、小鼠骨髓嗜多染红细胞微核试验以及小鼠精子畸形试验,以分析该白腐菌的食用安全性,为进一步应用白腐菌开发功能性食品提供数据支持。结果显示,小鼠经灌胃白腐菌,其LD50为6.76 g/kg(以白腐菌菌丝干重计)。微核试验和精子畸形试验结果均为阴性(P0.05)。试验结果表明,本次实验条件下,白腐菌对小鼠表现出一定的急性毒性,但未见遗传毒性,由此推断,在一定剂量范围内使用白腐菌作为食用材料是相对安全的,安全的剂量范围需要进一步扩大浓度梯度来确定。     

Tuberculosis patients co-infected with Mycobacterium bovis and Mycobacterium tuberculosis in an urban area of Brazil

In this cross-sectional study, mycobacteria specimens from 189 tuberculosis (TB) patients living in an urban area in Brazil were characterised from 2008-2010 using phenotypic and molecular speciation methods (pncA gene and oxyR pseudogene analysis). Of these samples, 174 isolates simultaneously grew on Löwenstein-Jensen (LJ) and Stonebrink (SB)-containing media and presented phenotypic and molecular profiles of Mycobacterium tuberculosis, whereas 12 had molecular profiles of M. tuberculosis based on the DNA analysis of formalin-fixed paraffin wax-embedded tissue samples (paraffin blocks). One patient produced two sputum isolates, the first of which simultaneously grew on LJ and SB media and presented phenotypic and molecular profiles of M. tuberculosis, and the second of which only grew on SB media and presented phenotypic profiles of Mycobacterium bovis. One patient provided a bronchial lavage isolate, which simultaneously grew on LJ and SB media and presented phenotypic and molecular profiles of M. tuberculosis, but had molecular profiles of M. bovis from paraffin block DNA analysis, and one sample had molecular profiles of M. tuberculosis and M. bovis identified from two distinct paraffin blocks. Moreover, we found a low prevalence (1.6%) of M. bovis among these isolates, which suggests that local health service procedures likely underestimate its real frequency and that it deserves more attention from public health officials.     

Tuberculosis vaccine design: influence of the completed genome sequence

Tuberculosis continues to be a major health problem, with more adults dying from Mycobacterium tuberculosis than any other pathogen world-wide.With the onset of the HIV epidemic and an increase in drug-resistant M. tuberculosis strains, the need for an improved vaccine has become an international priority.The recent completion of the genome sequences for two M. tuberculosis strains provides a wealth of information that can be used to design new strategies for vaccine development. The challenge comes in making rational choices from among the 4,000 genes of the most probable candidate immunogens or virulence genes.Thus, a well-designed screen is needed to reduce the number of candidates that must be tested. Presently, the most valuable role that bioinformatics can play is to provide such a screen.     

细胞壁缺陷结核分支杆菌致细胞病变作用的观察

目的：探讨细胞壁缺陷结核分支杆菌的致细胞病变作用。方法：用利福平诱导结核分支杆菌形成稳定L型后感染Vero细胞,直接在显微镜下和抗酸染色观察细胞病变情况以及结核分支杆菌同宿主细胞的关系。结果：Vero细胞受结核分支杆菌L型感染72h后形成空泡、变圆、脱落和裂解,结核分支杆菌稳定L型细胞粘附或侵入细胞内。结论：细胞壁缺陷结核分支杆菌仍然能够引起Vero细胞发生病变但致细胞病变的作用较其亲代细菌型明显减弱,L型能够粘附于宿主细胞表面或进入宿主细胞内生长繁殖,引起缓慢的细胞病变。     

Identification of peptidomimetic compounds as potential inhibitors against MurA enzyme of Mycobacterium tuberculosis

Abstract

Increasing prevalence of resistance to anti-tubercular drugs has become the foremost challenge now. According to WHO, over half a million of multidrug resistance cases (rifampicin, isoniazid, etc.) were reported in 2017, mostly emerging from countries such as China, India, and Russia. Therefore, developing new drugs or repurposing existing ones is need of the hour. The Mycobacterium cell wall biogenesis pathway offers many attractive targets for drug discovery against Tuberculosis (TB). MurA, a transferase enzyme that catalyzes the initial step of peptidoglycan (PG) biosynthesis, is one among them. A peptidoglycan layer resides over the plasma membrane and is an integral component of the bacterial cell wall. Therefore, disruption of their formation through inhibition of MurA enzyme should lead to deficiency in Mycobacterium cell synthesis. Based on this strategy, we have designed this study where two libraries of peptidomimetic compounds (Asinex & ChemDiv) were first screened against our modeled MurA structure and then validated through molecular dynamic simulations. From our virtual screening, top four compounds (ChemDiv: D675-0102, D675-0217; Asinex: BDE25373574, BDE 26717803) were selected based on their docking scores, binding energies, and interactions with catalytic site residues, for further evaluation. Results revealed stable ligand-MurA interactions throughout 50?ns of MD simulation and also druggability acceptable pharmacokinetic profile for all four compounds. Thus, based on our findings, these compounds could be considered as potential inhibitors of Mycobacterium MurA enzyme and hence be further tested for in vitro experimental validation as TB therapeutic drug candidate.

Communicated by Ramaswamy H. Sarma     

Extensively drug-resistant tuberculosis: current challenges and threats

Extensively drug-resistant tuberculosis (XDR-TB) is defined as tuberculosis caused by a Mycobacterium tuberculosis strain that is resistant to at least rifampicin and isoniazid among the first-line antitubercular drugs (multidrug-resistant tuberculosis; MDR-TB) in addition to resistance to any fluroquinolones and at least one of three injectable second-line drugs, namely amikacin, kanamycin and/or capreomycin. Recent studies have described XDR-TB strains from all continents. Worldwide prevalence of XDR-TB is estimated to be c. 6.6% in all the studied countries among multidrug-resistant M. tuberculosis strains. The emergence of XDR-TB strains is a reflection of poor tuberculosis management, and controlling its emergence constitutes an urgent global health reality and a challenge to tuberculosis control activities in all parts of the world, especially in developing countries and those lacking resources and as well as in countries with increasing prevalence of HIV/AIDS.     

Evaluation of a low-cost calorimetric approach for rapid detection of tuberculosis and other mycobacteria in culture

Aims: The objective of this study was to evaluate the effectiveness of microcalorimetry in rapid detection of mycobacterium species using an inexpensive Isothermal microcalorimetry (IMC) instrument. In addition, we compared microcalorimetry with conventional monitoring techniques. Methods and Results: Isothermal microcalorimetry measures heat production rate and can provide rapid detection of living mycobacteria in clinical specimens. Using liquid medium showed that bacterial activity measured by IMC using a TAM Air^® agreed with the triphenyl tetrazolium chloride (TTC) assay. Using solid medium to enhance growth, fast‐growing mycobacteria detection was achieved between 26 and 53 h and slow‐growing mycobacteria detection was achieved between 54 and 298 h. In addition, the calorimetric data were analysed to estimate the growth rate and generation time of the mycobacteria monitored. Significance and Impact of the Study: Infections caused by mycobacteria are severe and difficult to treat. With 9·27 million new cases of tuberculosis in 2007, developing countries experience severe health and economic consequences owing to the lack of an affordable, fast detection method. Research‐grade IMC instruments are too expensive to use in developing countries. Our study demonstrates that less‐expensive instruments such as the TAM air ^® are adequate for mycobacteria detection and therefore establishes a clear proof of concept.     

Polymorphisms of 20 regulatory proteins between Mycobacterium tuberculosis and Mycobacterium bovis

Mycobacterium tuberculosis and Mycobacterium bovis are responsible for tuberculosis in humans and animals, respectively. Both species are closely related and belong to the Mycobacterium tuberculosis complex (MTC). M. tuberculosis is the most ancient species from which M. bovis and other members of the MTC evolved. The genome of M. bovis is over >99.95% identical to that of M. tuberculosis but with seven deletions ranging in size from 1 to 12.7 kb. In addition, 1200 single nucleotide mutations in coding regions distinguish M. bovis from M. tuberculosis. In the present study, we assessed 75 M. tuberculosis genomes and 23 M. bovis genomes to identify non‐synonymous mutations in 202 coding sequences of regulatory genes between both species. We identified species‐specific variants in 20 regulatory proteins and confirmed differential expression of hypoxia‐related genes between M. bovis and M. tuberculosis.