腾格里沙漠不同生物土壤结皮微生物多样性分析

主要采用MiSeq技术对腾格里沙漠不同生物土壤结皮中微生物16S rRNA基因V4-V5区进行测序, 分析其细菌群落结构的组成、丰度以及多样性, 通过非度量多维尺度法和Venn图解释微生物群落结构对生物土壤结皮演化过程的响应。结果表明不同生物土壤结皮在门水平上主要以Proteobacteria、Actinobacteria和Cyanobacteria为优势类群; 结皮下流沙层在门水平上主要以Actinobacteria、Proteobacteria、Chloroflexi和Acidobacteria为优势类群。在OTUs组成上, 样品之间存在共同的微生物类群, 也存在差异的微生物类群。结皮下流沙层的微生物群落结构组成相似, 与结皮中微生物群落结构的组成差异较大, 且藻结皮和藓结皮中微生物类群差异明显, 说明微生物类群对生物土壤结皮的演化过程做出了环境响应。在从流沙向藻结皮到藓结皮的演化过程中, 放线菌(Actinobacteria)、蓝细菌(Cyanobacteria)和变形菌(Proteobacteria)对结皮形成、演化的生物地球化学循环过程发挥着重要的影响。结皮中不同微生物类群丰度的差异表明其对沙漠土壤环境变化的响应以及生态功能的不同。     

植物ABC和MATE转运蛋白与次生代谢物跨膜转运

植物产生大量的次生代谢物,不但对植物自身适应性具有极其重要的作用,而且有着巨大的实用价值。次生代谢物的跨膜转运是植物次生代谢工程研究的一个新兴领域。ABC（ATP-binding cassette）和MATE（multidrug and toxin extrusion）转运蛋白与生物体内多种物质的跨膜转运有关,在植物次生代谢物的运输过程中均发挥着重要作用。文章主要综述了ABC和MATE转运蛋白在植物次生代谢物跨膜转运中的研究进展。     

结核分枝杆菌ABC转运蛋白与物质的跨膜转运

结核分枝杆菌作为一种胞内寄生菌,主要存在于巨噬细胞吞噬体内,并且通过与宿主细胞竞争摄取营养物质、主动排出有毒物质来维持生存。因此,参与上述过程的ABC转运蛋白在结核分枝杆菌的致病中发挥着举足轻重的作用。已有报道结核分枝杆菌基因组编码了38个ABC转运蛋白。这类蛋白质有着广泛的底物结合谱,参与了无机离子、糖类、氨基酸、寡肽、药物等多种物质的跨膜转运。本文将对结核分枝杆菌编码的ABC转运蛋白超家族中的不同成员及其底物特异性、转运机制以及与毒力的关系的研究进展进行综述。     

腾格里沙漠东南缘不同生物土壤结皮细菌多样性及其季节动态特征

微生物多样性对于生物土壤结皮在沙漠生态系统中改善局部环境以及提升生态功能具有重要作用。本研究对腾格里沙漠东南缘沙坡头地区藻结皮、藓结皮及其下层的四季样品进行了16S rDNA高通量测序, 以期阐明细菌多样性及其在生物土壤结皮演替过程中的季节变化规律。结果表明4种类型样品的细菌丰富度在夏季显著低于其他3个季节。4种类型样品中主要的细菌类群为变形菌门、放线菌门、绿弯菌门、酸杆菌门、蓝细菌门等, 其中变形菌门和放线菌门为优势类群, 夏季时变形菌门的相对多度显著高于春季、秋季、冬季, 且在结皮层中相对多度显著高于结皮下层。放线菌门的相对多度在春季、夏季显著高于秋季、冬季, 且结皮下层相对多度高于结皮层。生物土壤结皮演替过程中细菌多样性及其相对多度季节动态变化表明其对沙漠土壤局部环境的变化作出了响应, 这为深入理解生物土壤结皮在沙漠生态系统中的生态功能提供了微生物多样性数据。     

铜尾矿废弃地生物土壤结皮固氮微生物多样性

生物土壤结皮能够有效提高矿业废弃地有机质和氮的积累,促进植被的恢复.本研究基于固氮微生物的nifH基因多样性,以铜陵铜尾矿废弃地3种类型的生物土壤结皮(藻结皮、藓结皮和藻-藓混合结皮)为对象,利用变性梯度凝胶电泳(DGGE)技术研究生物土壤结皮中固氮微生物的多样性以及废弃地植物群落发育对其产生的影响.结果表明： 尾矿库裸地表面的藻结皮的固氮微生物多样性最高,其次为维管植物群落下的藻-藓混合结皮,苔藓结皮的固氮蓝藻多样性最低;随着维管植物群落高度和盖度的增加,固氮微生物多样性降低,铜尾矿废弃地的pH、水分、有机质、养分含量(氮和磷)以及有效态和总重金属浓度对固氮微生物多样性的影响均不显著.测序和系统发育分析表明,废弃地结皮中固氮微生物以蓝藻为主,主要为不具有异形胞的丝状蓝藻.
     

腾格里沙漠东南缘藓结皮微生物组基因多样性及功能

本研究对腾格里沙漠东南缘沙坡头地区藓结皮土壤样品进行了宏基因组测序, 以揭示该地区藓结皮土壤中参与固碳、固氮等生态功能的微生物基因及其代谢通路。结果表明, 藓结皮土壤中细菌域微生物最多, 其次为古生菌域和真核生物域。在细菌域中, 放线菌门(Actinobacteria)数量最多, 其次是变形菌门(Proteobacteria)和蓝细菌门(Cyanobacteria)。基于eggNOG和KEGG数据库对构建的非冗余基因集进行功能预测, 藓结皮土壤中微生物基因多样性和代谢路径多样性高。藓结皮土壤中与固氮相关的代谢通路丰度低可能是藓结皮固氮量微弱的根本原因, 造成利用大气中氮气合成氨的生态功能减弱。而藓结皮已经形成的氮库主要通过硝酸盐还原途径将硝酸盐还原成铵盐, 可能用于藓结皮微生物组自身的氨基酸合成, 也可能为藓类植物的生长提供有效氮源。     

肿瘤多药耐药性中的ABC转运蛋白及其调节

ABC转运蛋白是一类利用ATP水解能量,逆浓度方向将一系列化合物转运通过膜结构的膜蛋白,这一类蛋白能转运离子,糖,氨基酸,维生素,多肽,多糖,激素,脂类及生物异源物质.P-糖蛋白(P-gp)、多药耐药相关蛋白(MRP)和乳腺癌耐药蛋白(BCRP)等ABC转运蛋白还具有转运抗癌药物的能力,因此对化疗的有效性有负面的影响.近年来,许多研究涉及到如何逆转由ABC转 运蛋白引起的肿瘤多药耐药性.本文概述了近年来在蛋白水平,mRNA水平或DNA水平上对ABC转运蛋白调控的研究.     

植物跨膜离子转运蛋白与其耐盐性关系研究进展

盐胁迫下植物吸收过多的N a ,使植物体内的离子平衡受到破坏,为了维持其正常生长细胞内的各种离子就必须保持平衡,而这一过程主要是由位于质膜和液泡膜上的离子转运蛋白完成的,并在植物耐盐性方面起关键作用。本文主要对响应盐胁迫的几种跨膜转运蛋白如:K /N a 离子转运蛋白、N a /H 逆向转运蛋白以及与其相关的H -ATPase等,在植物耐盐分子生物学方面的研究进展进行综述。     

金鱼ABC转运蛋白基因家族成员鉴定及分析

腺苷三磷酸结合盒转运蛋白(ATP-binding cassette transporter,ABC transporter)基因家族在原核生物和真核生物中广泛存在,该家族蛋白能够利用ATP裂解产生的能量将多种底物转运到膜上,参与多种生物过程,如营养摄入、细胞解毒、脂质稳态、信号转导、病毒防御以及抗原呈递等。目前,鱼类中,只在斑马鱼、斑点叉尾鮰和鲤鱼等少数鱼类中对该基因家族进行了系统的研究,关于金鱼ABC转运蛋白基因家族的详细分析,未见报道。本研究中,我们利用三代结合二代测序技术构建的金鱼转录组参考基因集数据,鉴定出55个ABC转运蛋白基因,通过系统进化分析将它们分为8个亚家族(A^H)。即金鱼ABC转运蛋白基因是由10个ABCA、14个ABCB、13个ABCC、5个ABCD、1个ABCE、4个ABCF、7个ABCG和1个ABCH组成。同时,我们将金鱼与斑马鱼、斑点叉尾鮰和鲤鱼等物种ABC转运蛋白基因家族成员的数目进行比较分析,推测硬骨鱼类特异的第3次全基因复制(3R-WGD)和谱系特异的第4次全基因组复制(4R-WGD)对金鱼该基因家族成员数目的影响。本研究结果为金鱼ABC转运蛋白基因功能的研究提供了理论依据。     

跨膜离子转运蛋白与植物耐盐的分子生物学

植物抵御盐害的主要方式是增加Na 的外排、减少Na 的吸入和Na 的区隔化,而Na 的跨膜运输主要由质膜和液泡膜上的离子转运蛋白完成。对质膜和液泡膜跨膜离子转运蛋白包括K /Na 离子转运蛋白,Na /H 逆向转运蛋白以及液泡膜H -PPase的分子生物学研究及应用进展进行了综述。     

Progress in the study of algae and mosses in biological soil crusts

Algae and mosses are not only two of the familiar communities in the process of desert vegetational succession, but also have the highest biomass in biological soil crusts. Meanwhile, being the pioneer plants, algae and mosses are involved in the establishment of biological soil crusts, which have great importance in arid environments and play a major role in desert ecosystems, such as being the indicator of the vegetation type, soil-holding, preventing erosion by water and wind, and sand fixation. This paper reviews the advances in the study of algae and mosses in arid and semi-arid areas. It mainly describes the ecological functions of algae and mosses including their influences on water cycle, circulation of substances, and community succession. In addition, the relationships between algae and mosses are discussed. Finally, some suggestions are proposed for the research orientations of algae and mosses in biological soil crusts. Ecologically, algae and mosses have significant ecological importance in arid areas, especially in those areas where environmental problems are becoming increasingly serious.     

不同类型生物土壤结皮覆盖下风沙土的入渗特征及模拟

干旱荒漠区广泛分布的生物土壤结皮(BSCs)对土壤水分入渗过程有重要影响。以古尔班通古特沙漠南缘的BSCs为研究对象,基于野外采样与室内模拟实验等方法,探究藓类、地衣和藻等3种类型BSCs覆盖下沙土的入渗特征。结果表明:与无结皮覆盖的风沙土对照,3种类型BSCs均显著降低了沙土初渗速率,藓类结皮、地衣结皮、藻结皮覆盖下初渗速率降低幅度依次为36.10%、46.42%、50.39%;藓类结皮、地衣结皮(P0.05)和藻结皮(P0.05)均明显降低了沙土稳渗速率,降低幅度依次为16.50%、33.98%和35.92%;3种类型BSCs均限制了湿润锋在沙土的推进过程,表现为:藓类结皮、地衣结皮、藻结皮的渗漏时间分别为裸沙对照的2.13、3.04和2.98倍;各类型BSCs均减小了沙土累积入渗量,阻碍了沙土水分入渗,与裸沙对照相比,藓类结皮、地衣结皮、藻结皮的1 h累积入渗量分别降低16.10%、28.56%和26.56%。在实验条件下,Kostiakov模型最适用于模拟不同类型BSCs覆盖下土壤水分入渗过程,Horton模型模拟效果次之。     

生物结皮对3种荒漠草本植物光合生理特性的影响

通过人工去除生物结皮实验,研究古尔班通古特沙漠生物结皮对3种荒漠草本植物生理特性的影响,根据生物结皮对土壤养分和水分的影响,综合分析生物结皮对3种草本植物光合生理特性的影响。结果表明,生物结皮对3种荒漠草本植物光合生理的影响基本一致,在植物生长早期,生物结皮区的尖喙牻牛儿苗（Erodium oxyrrhynchum M.Bieb.）、条叶庭荠（Alyssum linifolium Steph.ex Willd.）和琉苞菊（Hyalea pulchella（Ldb.） C.Koch）的叶片相对含水量（RWC）、净光合速率（P_n）、气孔导度（G_s）、蒸腾速率（E）、水分利用效率（WUE）、PSⅡ最大光化学量子效率（F_v/F_m）、PSⅡ实际光化学效率（φ_PSⅡ）和叶绿素（Chl）含量均高于去除生物结皮区;但是,在植物生长后期,却是去除生物结皮区的各项生理指标高。生物结皮对3种荒漠草本植物光合生理过程的影响与其对植物生长的影响基本一致,这与土壤养分和水分状况的变化密切相关。     

Progress in the study of algae and mosses in biological soil crusts

Algae and mosses are not only two of the familiar communities in the process of desert vegetational succession,but also have the highest biomass in biological soil crusts.Meanwhile,being the pioneer plants,algae and mosses are involved in the establishment of biological soil crusts,which have great importance in arid environments and play a major role in desert ecosystems,such as being the indicator of the vegetation type,soil-holding,preventing erosion by water and wind,and sand fixation.This paper reviews the advances in the study of algae and mosses in arid and semi-arid areas.It mainly describes the ecological functions of algae and mosses including their influences on water cycle,circulation of substances,and community succession.In addition,the relationships between algae and mosses are discussed.Finally,some suggestions are proposed for the research orientations of algae and mosses in biological soil crusts.Ecologically,algae and mosses have significant ecological importance in arid areas,especially in those areas where environmental problems are becoming increasingly serious.     

Population dynamics of Echinops gmelinii Turcz. at different successional stages of biological soil crusts in a temperate desert in China

• The effects of biological soil crusts (BSC) on vascular plant growth can be positive, neutral or negative, and little information is available on the impacts of different BSC successional stages on vascular plant population dynamics.
• We analysed seedling emergence, survival, plant growth and reproduction in response to different BSC successional stages (i.e. habitats: bare soil, cyanobacteria, lichen and moss crusts) in natural populations of Echinops gmelinii Turcz. in the Tengger Desert of northwest China. The winter annual E. gmelinii is a dominant pioneer herb after sand stabilisation.
• During the early stages of BSC succession, the studied populations of E. gmelinii were characterised by high density, plant growth and fecundity. As the BSC succession proceeded beyond moss crusts, the fecundity decreased sharply, which limited seedling recruitment. Differences in seedling survival among the successional stages were not evident, indicating that BSC have little effect on survival in arid desert regions. Moreover, E. gmelinii biomass allocation exhibited low plasticity, and only reproductive allocation was sensitive to the various habitats. Our results further suggest that the negative effects of BSC succession on population dynamics are primarily driven by increasing topsoil water‐holding capacity and decreasing rain water infiltration into deeper soil.
• We conclude that BSC succession drives population dynamics of E. gmelinii, primarily via its effect on soil moisture. The primary cause for E. gmelinii population decline during the moss‐dominated stage of BSC succession is decreased fecundity of individual plants, with declining seed mass possibly reducing the success of seedling establishment.

     

火电厂周边不同生物结皮细菌群落特征差异及其影响因素

为探究大气降尘重金属污染对矿区周边不同类型生物结皮细菌群落结构的影响,利用高通量测序技术分析位于宁东能源化工基地典型火电厂周边的3类生物结皮(藻结皮ZB、混生结皮HB、苔藓结皮TB)和对照(CK,裸土)的细菌丰度和群落结构,并探讨了影响细菌群落结构的环境因子。结果表明: 不同类型生物结皮的理化性质和重金属含量存在差异,且由于生物结皮对大气降尘重金属的富集作用造成各类结皮均达重度污染级别。在相对丰度排名前10的优势细菌门中,芽单胞菌门、蓝细菌门在不同类型生物结皮之间差异显著。细菌群落α多样性由高到低排序依次为CK>TB>HB>ZB。非度量多维排序(NMDS)结果显示,裸土细菌群落与其他3种生物结皮存在明显差异。相关性分析表明,生物结皮演替对细菌群落组成具有显著影响,细菌多样性和组成与pH、养分、重金属含量等密切相关。放线菌门、绿弯菌门相对丰度与pH值呈显著正相关关系,而与全氮(TN)、全磷(TP)、Pb、Zn、Cd均呈显著负相关关系;冗余分析结果表明,TN、pH、TP、有机碳(SOC)是影响3种生物结皮细菌群落α多样性以及一些优势菌群相对丰度的主要土壤环境因子,而重金属Pb、Zn、Cd是影响细菌群落结构的主要重金属元素,对细菌群落数量和多样性有抑制或刺激作用。说明pH、重金属和养分是影响结皮细菌群落组成的关键因子。总体而言,长期的重金属富集作用会对生物结皮的细菌多样性和群落组成产生影响。     

温带荒漠生物土壤结皮微生物群落结构与功能演替研究综述

生物土壤结皮(biological soil crusts,BSC)在荒漠植被的恢复及稳定性维持方面发挥了重要作用,被誉为“荒漠生态系统工程师”。BSC微生物群落是其发挥功能的主要成分,参与了BSC的形成、土壤性状的改善、土壤团聚体的稳定及植被的发育等过程。由于技术方法的限制,以往对BSC微生物群落发育如何调控荒漠植被稳定性的机理尚不清楚。近年来,随着土壤微生物组学技术的快速发展,BSC微生物群落组成及其功能的研究取得了较大进展,关于BSC微生物群落对荒漠生态系统贡献的认识日渐清晰。本文总结了温带荒漠BSC演替过程中微生物不同类群细菌、真菌、古菌群落的组成结构及参与碳氮循环的潜在功能变化,并对影响微生物群落结构和功能的土壤因素进行了剖析,阐释了BSC微生物群落与土壤功能性状相互作用及协同演替的模式,厘清了BSC促进荒漠土壤改善的机理,为温带荒漠植被恢复及荒漠生态系统对全球贡献的理解提供了依据。     

古尔班通古特沙漠生物土壤结皮对土壤氮库垂直分布特征的影响

生物土壤结皮在干旱区氮素地球化学循环中具有重要作用,研究不同生物土壤结皮下不同形态氮素含量的变化,解析生物土壤结皮对土壤养分影响过程和范围,有助于进一步理解生物土壤结皮的生态功能。本研究以古尔班通古特沙漠藻-地衣混生结皮和藓类结皮两种生物土壤结皮为研究对象,以裸沙为对照,测定生物土壤结皮层和0—100 cm内8个土层全氮、无机氮、可溶性有机氮、游离态氨基酸氮、微生物生物量氮等氮库含量,和土壤脲酶、硝酸盐还原态酶、亮氨酸氨基肽酶等土壤胞外酶活性。结果表明：1)结皮层各形态氮素含量和各土壤酶活性显著高于其下层土壤,结皮层和结皮下各层土壤氮库整体上表现为藓类结皮>藻-地衣混生结皮>裸沙;土壤氮库各形态氮素含量和土壤酶活性在垂直分布上均呈现先显著下降(0—20 cm)后稳定(20—100 cm)的趋势;在20—30 cm土层,除裸沙的无机氮、铵态氮以及藻-地衣混生结皮的硝态氮外,其余速效氮(无机氮、硝态氮、铵态氮)含量具有增加的特点。2)土壤各氮库含量与全磷、有机碳、电导率、土壤脲酶和亮氨酸氨基肽酶活性呈正相关,与pH、土壤含水率呈负相关。3)利用氮循环相关指标建立土壤氮循环多功能...     

Recovery of lichen-dominated soil crusts in a hyper-arid desert

Soil crust lichens can be the dominant vegetation in desert regions that are unsuitable for higher plants, and are vital to soil stabilization and primary production. Biological soil crusts are vulnerable to disturbance and there is little evidence of the lichen components achieving full recovery following human disturbances in semi-arid to arid environments, and no records of recovery in hyper-arid deserts. Eight sites with varying anthropogenic, mechanical disturbance regimes were assessed in the hyper-arid Namib Desert for levels of recovery and successional convergence, based on a comparative analysis of overall lichen cover and community composition in disturbed and control locations. Recovery time estimations ranged from 5 to 530 years, with no detected linear relationship to impact gradient (low to high impact). Variables that were found to most strongly influence recovery rates were the overall cover of lichen growth and total number of lichen species in the bordering undisturbed areas, followed by the extent of soil compaction in the disturbed area, altered soil surface microrelief and vitality of subsurface soil crust components. An assessment of pioneering species demonstrated a link between increased soil depressions, i.e. track ruts, and the occurrence of fragmenting, wind-dispersing species. Track ruts in hype-arid deserts are not as vulnerable to the water erosion found in less arid deserts, and may be advancing recovery by trapping fragments. However, the lichen community structure was significantly different between all of the disturbed and control areas, regardless of the recovery phase, suggesting that while the lichen community composition may not. The ecological consequences of such disturbances may be far reaching in hyper-arid deserts where lichens are primary heterotrophs soil stabilizers. Given the economic development occurring within coastal hyper-acid deserts of the world, these impacts undoubtedly call for conservation attention.