Microsatellite genotyping of carnation varieties

A set of 11 sequence-tagged microsatellite markers for carnation (Dianthus caryophyllus) was developed using a DNA library enriched for microsatellites. Supplemented with three markers derived from sequence database entries, these were used to genotype carnation varieties using a semi-automated fluorescence-based approach. In a set of 82 cultivars, the markers amplified 4-16 alleles each. The effective number of alleles varied from 1.9 to 6.0. For the eight best scorable markers, heterozygosity was between 0.51 and 0.99. The markers were able to distinguish all cultivars with a unique combination of alleles, except for sport mutants, which were readily grouped together with the original cultivar. In addition, one group of three and one group of six cultivars each had the same combination of 'allelic peaks'. The cluster of three varieties concerned original cultivars and their mutants. The cluster of six consisted of four mutants from the same cultivar and two other varieties.     

Kaempferide triglycoside: a possible factor of resistance of carnation (Dianthus caryophyllus) to Fusarium oxysporum f. sp. dianthi

A kaempferide triglycoside has been found as a constitutive component in an uninfected carnation (Dianthus caryophyllus) of the cultivar Novada. The chemical structure has been determined mainly by the use of spectroscopic methods, including 2D NMR experiments. It showed a strong activity in restricting fungal parasite development, which could contribute to the known ability of carnation cv. Novada to resist to Fusarium oxysporum f. sp. dianthi infection.     

A Phytoalexin-Like Flavonol Involved in the Carnation (Dianthus caryophyllus)-Fusarium oxysporum f. sp. dianthi Pathosystem

The fungitoxic flavonol triglycoside, kaempferide 3‐O‐[2^G‐β‐d ‐glucopyranosyl]‐β‐rutinoside, is a constituent of the carnation cultivar ‘Novada’, known as one of the most resistant cultivar to Fusarium oxysporum f. sp. dianthi, causative agent of Fusarium wilt. Due to its constitutive presence within the carnation tissues, this antifungal flavonol should be considered as a phytoanticipin; its biosynthesis, however, is stimulated by the inoculation with F. oxysporum f. sp. dianthi, just as is the rule for a typical phytoalexin. The results seem to indicate that in carnation the concentration of some preformed antifungal flavonoids may be significantly increased by a fungal presence: owing to their fungitoxic properties, these molecules could cooperate, together with the unconstitutive and postinfectional anthranilic acid‐derivative phytoalexins, to the plant defensive response against Fusarium attacks.     

Excision of transposable elements from the chalcone isomerase and dihydroflavonol 4-reductase genes may contribute to the variegation of the yellow-flowered carnation (Dianthus caryophyllus)

In the "Rhapsody" cultivar of the carnation, which bears white flowers variegated with red flecks and sectors, a transposable element, dTdic1, belonging to the Ac/Ds superfamily, was found within the dihydroflavonol 4-reductase (DFR) gene. The red flecks and sectors of "Rhapsody" may be attributable to a reversion to DFR activity after the excision of dTdic1. The yellow color of the carnation petals is attributed to the synthesis and accumulation of chalcone 2'-glucoside. In several of the carnation cultivars that bear yellow flowers variegated with white flecks and sectors, both the chalcone isomerase (CHI) and DFR genes are disrupted by dTdic1.     

First Report of Fusarium proliferatum Infecting Carnation (Dianthus caryophyllus L.) in China

In 2011, a wilt disease has been detected on carnation (Dianthus caryophyllus L.) cultivar ‘Light Pink Barbara’ in Kunming, Yunnan, China. A Fusarium sp. was consistently recovered from pieces of symptomatic tissues on Petri dishes containing potato dextrose agar (PDA). On the basis of morphological characteristics and molecular identification by DNA sequencing of ribosomal DNA internal transcribed spacer (rDNA ITS) and partial translation elongation factor‐1α (TEF) gene region, following their phylogenetic trees construction, the putative causal agent was identified as Fusarium proliferatum (Matsushima) Nirenberg, and its pathogenicity was finally confirmed by Koch's postulates. To our knowledge, this is the first report of a wilt disease caused by F. proliferatum on carnation in China.     

香石竹植株再生及基因工程研究进展

本文对香石竹的再生体系、遗传转化体系及其分子育种现状作了较为系统的总结。香石竹的再生体系多以器官直接再生不定芽为主, 而通过愈伤组织和体细胞胚途径再生报道较少。用农杆菌介导法和基因枪法均可建立香石竹遗传转化体系, 但近年来的研究显示农杆菌介导法应用普遍且比较稳定。近年来以延长香石竹瓶插寿命为目标的分子育种研究已取得较大进展, 对其色、香和形等其他重要性状的分子育种也已经起步, 而有关香石竹抗性的分子育种有待进一步开拓。     

Plant regeneration from stem and petal of carnation (Dianthus caryophyllus L.)

Plants were regenerated via adventitious shoot initiation from petal explants of carnation (Dianthus caryophyllus L.) cultivars Crowley Sim, Ember Rose, Orchid Beauty, Red Sim, White Sim and from stem segments of Crowley Sim, Red Sim, White Sim. Differences in cultivar response were observed, with White Sim being the most responsive for both explant types. Plants were also regenerated from receptacles of this cultivar. The effect of different cytokinins on regeneration from petal and stem explants of cultivar White Sim was compared. Thidiazuron was more effective than 6-benzylaminopurine or kinetin. In stem explants, morphogenic capacity was determined by the developmental stage of the explant. Highest percentage of shoot formation was observed in the youngest stem segments, on all the cytokinins tested. Stem-derived plants grew faster than petal or receptacle-derived plants and produced normal, flowering plants eight to ten months after culture.     

香石竹植株再生及基因工程研究进展

本文对香石竹的再生体系、遗传转化体系及其分子育种现状作了较为系统的总结。香石竹的再生体系多以器官直接再生不定芽为主,而通过愈伤组织和体细胞胚途径再生报道较少。用农杆菌介导法和基因枪法均可建立香石竹遗传转化体系,但近年来的研究显示农杆菌介导法应用普遍且比较稳定。近年来以延长香石竹瓶插寿命为目标的分子育种研究已取得较大进展,对其色、香和形等其他重要性状的分子育种也已经起步,而有关香石竹抗性的分子育种有待进一步开拓。     

Influence of Fusarium wilt toxin(s) on carnation cells

The influence of culture filtrates of Fusarium oxysporum f.sp. dianthi which causes Fusarium wilt was investigated on growth and viability of carnation tissue cultures and leaf segments. Culture filtrates of avirulent race 1 of this fungus did not affect calli and leaf segments of cultivars both susceptible and resistant to Fusarium wilt. However, culture filtrates of virulent race 2 decreased viability and suppressed growth of callus of the susceptible cultivar. In contrast, callus of the resistant cultivar showed resistance to the culture filtrates. The results of these experiments may provide information on methods of selection of new wilt resistant carnation varieties.Abbreviations A270 absorbance at 270 nm - 2,4-d 2,4-dichlorophenoxyacetic acid - CF-MCD culture filtrate of 16064 grown in MCD medium - MCD medium modified Czapeck-Dox medium - MS medium basal medium of Murashige and Skoog - MW molecular weight - PD medium potato dextrose medium - TTC 2,3,5-triphenyl tetrazolium chloride     

Event-specific qualitative and quantitative PCR detection of the GMO carnation (Dianthus caryophyllus) variety Moonlite based upon the 5'-transgene integration sequence

To ensure the implementation of genetically modified organism (GMO)-labeling regulations, an event-specific detection method was developed based on the junction sequence of an exogenous integrant in the transgenic carnation variety Moonlite. The 5'-transgene integration sequence was isolated by thermal asymmetric interlaced PCR. Based upon the 5'-transgene integration sequence, the event-specific primers and TaqMan probe were designed to amplify the fragments, which spanned the exogenous DNA and carnation genomic DNA. Qualitative and quantitative PCR assays were developed employing the designed primers and probe. The detection limit of the qualitative PCR assay was 0.05% for Moonlite in 100 ng total carnation genomic DNA, corresponding to about 79 copies of the carnation haploid genome; the limit of detection and quantification of the quantitative PCR assay were estimated to be 38 and 190 copies of haploid carnation genomic DNA, respectively. Carnation samples with different contents of genetically modified components were quantified and the bias between the observed and true values of three samples were lower than the acceptance criterion (<25%) of the GMO detection method. These results indicated that these event-specific methods would be useful for the identification and quantification of the GMO carnation Moonlite.     

Isolation and characterization of a cDNA clone encoding an auxin influx carrier in carnation cuttings. Expression in different organs and cultivars and its relationship with cold storage

Polar auxin transport (PAT) is necessary for the formation of adventitious roots in the base of leafy stem cuttings, as has been demonstrated in several studies in which the application of PAT inhibitors strongly inhibited the rooting of cuttings. However, unlike in the case of lateral roots, there is almost no information on the molecular mechanism that controls PAT in the formation of adventitious roots. A novel cDNA encoding an auxin influx carrier has been isolated and characterized from carnation (Dianthus caryophyllus) cuttings. The full length of DcAUX1 was obtained and the deduced aminoacid sequence revealed a high degree of identity with the corresponding auxin carrier proteins from several species. The expression of this gene depended on the organ, the carnation cultivar and the length of time cuttings had been stored in a cold chamber. As a rule, expression was higher in stem than in leaves, in the basal than in the first internode and in mature than in young leaves irrespective of the cultivar and the duration of the storage. This pattern of expression agrees with the results of a previous study showing that auxin from mature leaves was essential for rooting, while exogenous auxin applied to mature leaves was polarly transported in the stem and accumulated in the basal internode (the rooting zone). Variations in the expression observed during storage (depending of the cultivar) might be related to the variation in PAT and rooting reported in previous studies.     

Unusual ethylene-related behavior in senescing flowers of the carnation Sandrosa

The time course of ethylene production by senescing carnation ( Dianthus caryophyllus L. cv. Sandrosa) flowers was studied. These flowers are unusual in that they do not exhibit an autocatalytic increase in ethylene production nor do they develop petal in-rolling. Exposure of the flowers to exogenous ethylene resulted in a rise in their ethylene-forming enzyme (EFE) activity and ethylene production, and at the same time a marked decline in their fresh weight. Natural senescence was also accompanied by a rise in EFE activity, but with no concomitant rise in 1-amino cyclopropane carboxylic acid synthase activity nor in ethylene production. A shift in responsiveness to ethylene was observed, with young flowers more responsive to exogenous ethylene than older flowers. The results are discussed in terms of a proposed mechanism allowing for the decline in competence of this cultivar to respond to ethylene during senescence.     

昆明地区香石竹病毒病流行状况调查及脱病毒苗的制备

对昆明地区3种不同生产模式下的香石竹（Dianthus caryophyllus L.)进行了调查,采集样本146号,利用酶联免疫法和电镜检测法对样本感染香石竹病毒的情况进行检测,结果表明昆明地区主要流行的香石竹为香石竹斑驳病毒和香石竹坏死斑点病毒,以带香石竹斑驳病毒的香石竹品种“俏新朗”为实验材料,研究了直接剥茎尖法,高温处理结合剥茎尖法和病毒痤处理结合剥茎尖法3种方法在脱病毒效率和茎尖成苗率的差异,实验结果表明以加热处理结合剥茎尖法脱病毒效果最好,0.2mm茎尖脱病毒率可达77．78％,加5％病毒座处理对脱病毒有一定的影响,直接剥茎尖法脱病毒效果最差。     

Phylogenetic relationships among Portuguese rye based on isozyme, RAPD and ISSR markers

The phylogenetic relationships of 10 rye landraces and cultivars from the north of Portugal and from Brazil were analysed using 20 isozyme loci, and a total of 511 PCR markers (342 ISSRs and 169 RAPDs). The isozymes were analysed in at least 100 plants of each population/cultivar and, therefore, we have data about intra and inter population/cultivar genetic variability. However, the analyses with ISSRs and RAPDs were obtained using a mix of 25 plants of each population. Therefore, each population/cultivar was reduced to one tube and we have no data about intra genetic variability. As expected in a cross pollinated crop we found genetic diversity and a larger variation within than among the populations using isozymes. Somewhat unexpectedly, however, we found that the breeding cultivars have the same level of heterozygosity as the landraces. The phylogenetic relationships obtained using isozymes among the landraces, synthetic cultivar and the cultivars from breeding programs do not reflect their origin. Moreover, the cultivar from Brazil is not separated from the remaining populations/cultivars studied. However, the data observed using RAPDs and ISSRs are in agreement with their known origin. The populations maintained by the farmers in the north of Portugal are grouped in a cluster in the phenogram and the C902591 (from Brazil), the Alv?o (synthetic variety) and Larouco (a hybrid between Montalegre and Brazil) are in a different cluster. The ISSRs and RAPDs provide a rapid method for the production of polymorphic markers, which appear to correspond to known pedigree information.     

Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus L.)

The whole-genome sequence of carnation (Dianthus caryophyllus L.) cv. ‘Francesco’ was determined using a combination of different new-generation multiplex sequencing platforms. The total length of the non-redundant sequences was 568 887 315 bp, consisting of 45 088 scaffolds, which covered 91% of the 622 Mb carnation genome estimated by k-mer analysis. The N50 values of contigs and scaffolds were 16 644 bp and 60 737 bp, respectively, and the longest scaffold was 1 287 144 bp. The average GC content of the contig sequences was 36%. A total of 1050, 13, 92 and 143 genes for tRNAs, rRNAs, snoRNA and miRNA, respectively, were identified in the assembled genomic sequences. For protein-encoding genes, 43 266 complete and partial gene structures excluding those in transposable elements were deduced. Gene coverage was ∼98%, as deduced from the coverage of the core eukaryotic genes. Intensive characterization of the assigned carnation genes and comparison with those of other plant species revealed characteristic features of the carnation genome. The results of this study will serve as a valuable resource for fundamental and applied research of carnation, especially for breeding new carnation varieties. Further information on the genomic sequences is available at http://carnation.kazusa.or.jp.     

不同结构的外源ACO基因导入香石竹对瓶插寿命的影响

以香石竹叶片为外植体 ,利用根癌农杆菌 (Agrobacteriumtumefaciens)介导法 ,将香石竹ACC氧化酶 (ACO)基因核DNA的正义 (sense)、反义 (antisense)、正义重复 (sensedirectrepeat)和反义重复 (antisensedirectrepeat)等 4种T DNA结构导入香石竹‘Master’品种。经Southern杂交检测证明目的基因已整合到香石竹基因组 ,共获得 14个转化株系。在 25℃条件下比较瓶插寿命 ,对照植株花朵瓶插寿命为 5.8d ,多数转化株系花朵瓶插寿命达 11d ,最长者可达 12.8d。大多数转基因株系切花衰老过程中乙烯释放量显著减少 ,部分转基因株系切花衰老过程中几乎检测不到乙烯 ,而对照有明显的峰值。通过对本研究转化ACO基因核DNA与前人转化ACO基因cDNA延长瓶插寿命比较以及对不同T DNA结构的转化抑制内源基因表达的程度进行比较后 ,初步判断用核DNA转化后对内源基因的抑制效果与cDNA相当甚至更明显 ,反义基因可以比正义基因更有效地抑制内源的同源基因的表达 ,转重复基因比转单个基因能更有效地抑制内源的同源基因的表达。     

Influence of the geographical locations on the agronomical and technological potentialities of the olive tree (Olea europaea L.) in Tunisia

This study aims at characterization four cultivars of the olive trees, Chétoui, Chemlali, Gerboui, and Cha?bi, cultivated in three different geographical locations, from pomological and technological points of view. The pomological characters of the fruit are influenced by the geographical location. Each individual of the same cultivar expresses different pomological characters. We have noted a significant fluctuation of the flush percentage in three Cha?bi individuals according to their geographical site; it varies from 49.06 to 82.19%. The three Gerboui individuals showed a significant variability of the fruit weight (from 1.13 to 3.17 g). Fluctuations of olive oil contents were also observed. Several fatty acid compositions showed some variation. The oleic and linoleic acid contents varied among individuals from Chétoui and Cha?bi. Moreover, the individuals of the cultivar Chemlali showed a variation of their content in palmitic and palmitoleic acids. Indeed, each individual of a cultivar showed its own potentialities, which are reflected by its pomological and technological characters. According to their geographical location, individuals from a given cultivar displayed diverse potentialities.     

A comparative assessment of molecular marker assays (AFLP, RAPD and SSR) for white yam (Dioscorea rotundata) germplasm characterization

Several DNA‐based marker systems are available for genetic fingerprinting of plants but information on their relative usefulness for yam germplasm characterisation is lacking. The efficiency of RAPD, AFLP and SSR markers for the assessment of genetic relationships, and for cultivar identification and discrimination among 45 West and Central African white yam cultivars belonging to 22 morphotypes/cultivar groups was investigated. Dendrograms were produced based on band pattern scores using the UPGMA method. Results showed that each of the three techniques could unequivocably identify each cultivar, but that techniques differed in the mean number of profiles generated per primer (or primer pair) per cultivar, referred to as genotype index (GI). The order of merit based on this criterion in this study was AFLPs (GI = 2.56), SSRs (GI = 0.39) and RAPDs (GI = 0.35). Yam genotypes classified in the same cultivar group based on morphology were often genetically different, emphasising the need for molecular fingerprinting in yam germplasm characterisation. AFLPs showed the highest efficiency in detecting polymorphism and revealed genetic relationships that most closely reflected morphological classification.     

通过转重复结构的ACC氧化酶基因延长香石竹的瓶插期

以香石竹叶片为外植体,用农杆菌(Agrobacteriumtumefaciens)介导法,在选择分化培养基中培养后,将香石竹重复结构的ACC氧化酶(ACO)基因核DNA导入香石竹‘Maber品种.经Southera杂交检测,证明外源基因已整合到香石竹基因组,共获得3株转化植株.转基因植株在隔离条件下栽培时正常开花,转基因T257株系切花衰老过程中乙烯释放量较对照低95%,没有乙烯跃变峰出现.在25℃条件下比较瓶插期,有2个转化株系瓶插期显著延长,最长比对照长了5 d以上.