The effects of chilling and forcing temperatures on spring synchrony between larch casebearer and tamarack

1. Spring phenological synchrony can be important for tree-insect interactions. Depending on the magnitude and direction of phenological shifts, overwintering insects could be affected in many ways, for example, facing starvation or having to contend with increased chemical or physical defences of host trees. If temperature has different influences on the phenology of trees and insects, climate change can alter spring phenological synchrony.
2. In this experiment, we exposed tamarack seedlings and larch case bearer larvae from Minnesota, USA, to a variety of chilling and forcing temperatures and measured spring phenology (twig bud break and larval activation). We additionally measured case bearer performance on seedlings that were exposed to different forcing × chilling levels, tracking larval survivorship to adulthood.
3. Warmer forcing enhanced larval activation and bud break, but larval development slowed down past 21°C. Higher chilling temperatures accelerated bud break, but the effect was inconclusive for larvae. There was no chilling × forcing interaction for either species. Spring activity accelerated more quickly with increases in temperature for larvae than for seedlings, resulting in increased phenological synchrony at warmer temperatures. Activation rates for overwintering larvae were highest at 27°C, while survivorship to adulthood following spring activation was highest at 21°C. At temperatures at or beyond 27°C, no larvae reached adulthood.
4. Warmer winters and springs will likely initially increase spring synchrony between tamarack and larch case bearer, exposing larvae to younger, potentially more nutritious foliage, but extremely warm spring temperatures may decrease survivorship of larvae to adulthood.

     

Analysis of breast cancer progression using principal component analysis and clustering

We develop a new technique to analyse microarray data which uses a combination of principal components analysis and consensus ensemble k-clustering to find robust clusters and gene markers in the data. We apply our method to a public microarray breast cancer dataset which has expression levels of genes in normal samples as well as in three pathological stages of disease; namely, atypical ductal hyperplasia or ADH, ductal carcinoma in situ or DCIS and invasive ductal carcinoma or IDC. Our method averages over clustering techniques and data perturbation to find stable, robust clusters and gene markers. We identify the clusters and their pathways with distinct subtypes of breast cancer (Luminal,Basal and Her2+). We confirm that the cancer phenotype develops early (in early hyperplasia or ADH stage) and find from our analysis that each subtype progresses from ADH to DCIS to IDC along its own specific pathway, as if each was a distinct disease.     

The distribution of phlebotomine sandflies in the principal ecological zones of Jordan

A survey of the sandflies (Diptera: Psychodidae) of Jordan increased the number of species known from the country from three to thirteen. Composition of the phlebotomine fauna and the relative abundance of sandfly species differ among the six climatic zones, with a general distinction between the dry desert zones and the more humid Mediterranean zones. Species of Phlebotomus predominate in the former and Sergentomyia in the latter. Within the desert zone some species are restricted to the eastern desert and others to the Jordan Valley in the west.     

生态脆弱区贫困与生态环境的博弈分析

生态脆弱区既是生态环境破坏最典型、最强烈的区域,也是贫困问题最集中的区域。然而,实践中试图摆脱"贫困陷阱"的成功案例并不多见。其中一个重要原因是鲜有协同生态保护与扶贫的研究,尤其是忽视了不同利益主体的相互作用过程与机制。从博弈论的视角,探讨生态脆弱区不同利益主体的两组核心博弈,即政府与民众以及政府与企业的博弈。研究发现,扶贫与生态环境保护相互作用过程事实上就是协调不同利益主体的目标与利益的博弈过程,博弈结果一定程度上决定了扶贫的效果以及生态环境保护的效应。研究为深入理解贫困与生态环境相互作用的过程与机制提供一个理论分析框架,并为中国生态脆弱区可持续发展实践提供有益借鉴。     

Buffer zones for forest reserves: opinions of land owners and conservation value of their forest around nature reserves in southern Sweden

Buffer zones around reserves are often suggested, but have rarely been evaluated. We examined their design for small forest reserves (5–225 ha), where buffer zones (200 m wide) would protect the reserves and reduce negative edge effects. The potential buffer zones could be partly protected, but remain as private land. Alternatively, the state may buy land outside reserves (to be included in reserves). To consider opinions of forest owners, we interviewed 33 private forest owners in potential buffer zones of reserves. The respondents were weakly positive to conservation, but disliked a state reserve on their land, or a buffer zone where 50% of the forest would be protected without compensation; however, with compensation the majority of them were neutral or positive to such a buffer zone. In a choice between buffer zone or reserve bought by the state, the great majority of the respondents chose the buffer zone (compensation paid, land still private). We found no relationships between opinions of respondents and conservation values of their forests (densities of old and dead trees), but older owners had forests of higher value. The forest in the potential buffer zones had higher conservation value than other non-protected forests in southern Sweden. Thus, buffer zones may be valuable, and we suggest they are created in cooperation with local residents where this is possible.     

Monitoring of a sequencing batch reactor using adaptive multiblock principal component analysis

Multiway principal component analysis (MPCA) for the analysis and monitoring of batch processes has recently been proposed. Although MPCA has found wide applications in batch process monitoring, it assumes that future batches behave in the same way as those used for model identification. In this study, a new monitoring algorithm, adaptive multiblock MPCA, is developed. The method overcomes the problem of changing process conditions by updating the covariance structure recursively. A historical set of operational data of a multiphase batch process was divided into local blocks in such a way that the variables from one phase of a batch run could be blocked in the corresponding blocks. This approach has significant benefits because the latent variable structure can change for each phase during the batch operation. The adaptive multiblock model also allows for easier fault detection and isolation by looking at the relationship between blocks and at smaller meaningful block models, and it therefore helps in the diagnosis of the disturbance. The proposed adaptive multiblock monitoring method is successfully applied to a sequencing batch reactor for biological wastewater treatment.     

Quantification and recognition of parkinsonian gait from monocular video imaging using kernel-based principal component analysis

Background

The computer-aided identification of specific gait patterns is an important issue in the assessment of Parkinson's disease (PD). In this study, a computer vision-based gait analysis approach is developed to assist the clinical assessments of PD with kernel-based principal component analysis (KPCA).

Method

Twelve PD patients and twelve healthy adults with no neurological history or motor disorders within the past six months were recruited and separated according to their "Non-PD", "Drug-On", and "Drug-Off" states. The participants were asked to wear light-colored clothing and perform three walking trials through a corridor decorated with a navy curtain at their natural pace. The participants' gait performance during the steady-state walking period was captured by a digital camera for gait analysis. The collected walking image frames were then transformed into binary silhouettes for noise reduction and compression. Using the developed KPCA-based method, the features within the binary silhouettes can be extracted to quantitatively determine the gait cycle time, stride length, walking velocity, and cadence.

Results and Discussion

The KPCA-based method uses a feature-extraction approach, which was verified to be more effective than traditional image area and principal component analysis (PCA) approaches in classifying "Non-PD" controls and "Drug-Off/On" PD patients. Encouragingly, this method has a high accuracy rate, 80.51%, for recognizing different gaits. Quantitative gait parameters are obtained, and the power spectrums of the patients' gaits are analyzed. We show that that the slow and irregular actions of PD patients during walking tend to transfer some of the power from the main lobe frequency to a lower frequency band. Our results indicate the feasibility of using gait performance to evaluate the motor function of patients with PD.

Conclusion

This KPCA-based method requires only a digital camera and a decorated corridor setup. The ease of use and installation of the current method provides clinicians and researchers a low cost solution to monitor the progression of and the treatment to PD. In summary, the proposed method provides an alternative to perform gait analysis for patients with PD.

     

Tree-ring analysis of larch sawfly (Pristiphora erichsonii (Hartig)) defoliation events and hydrological growth suppression in a peatland

Insect defoliation events are a major forest disturbance in the boreal forest in Canada. Reconstructing previous events are crucial to understanding natural factors that lead to insect defoliation periods, improving our ability to predict future infestations and increasing the reliability of forest management plans and pest control programs. Researchers have often been limited in their ability to draw accurate conclusions regarding the history of larch sawfly (Pristiphora erichsonii (Hartig)) infestation events in North America. It is well known that floods can affect survival of larch sawfly populations, as well as suppress radial growth of eastern larch (Larix laricina (Du Roi) K. Koch) trees. Eastern larch often inhabits peatlands where high water-table levels can lead to a decrease in tree-ring widths. Water-table level increases result in similar radial-growth patterns to when trees are defoliated by larch sawfly, making accurate diagnoses of larch sawfly events a challenge. This fact becomes more accentuated when non-host species used for standard dendroecological analyses (often black spruce (Picea mariana (Mill.) Britton) present an opposite relationship to water-table variability, enhancing chances of drawing erroneous conclusions when using program OUTBREAK.This paper introduces a novel case study to advance the understanding of the complex landscapes where these larch sawfly events are taking place. It stresses the necessity of using upland sites less influenced by the hydrological regime to accurately reconstruct larch sawfly defoliation events. We found that where investigations are taking place solely in peatlands or lowlands, and where they are heavily influenced by hydrological conditions, the use of other lines of evidence such as pale rings and long-term hydrological records are crucial to understand the dynamics in the system. In our case study, program OUTBREAK identified five defoliation events in a peatland and upland site; however, hydrological data and pale ring evidence indicated that the last event identified in the peatland site by the host/non-host analysis was confounded by hydrological growth suppression.     

The effect of crown position and date of sampling on biomass,nutrient concentrations and contents of needles and shoots in European larch

 The nutrient concentrations and contents of needles and shoots of 22-year-old European larch (Larix decidua Mill.) were evaluated with respect to crown position, age of tissues and sampling date during a complete growing season. Concentrations of N, P, K, Ca, Mg and Zn in the needles and of N, P and K in the shoots differed significantly among the dates of sampling. The concentrations of N and Mn in the needles and all nutrients in the shoots (except Mg) also differed significantly with crown position. Maximum needle biomass was observed in the middle crown position (55% of the total) and maximum shoot biomass, in the lower crown position (52% of the total). Maximum needle and shoot nutrient contents were observed in the middle position of the living crown for long shoot, short shoot-1, short shoot-2, short shoot-3 and, short shoot-4 age classes while highest contents for short shoot-5 and short shoot-6 age classes were observed in the lower crown position. Biases up to 42% for Mg in the needles and 200% for K in the shoots were obtained when only long shoot tissues are used for content evaluation. For needles and shoots, Mg and K are more difficult nutrients to evaluate. A sampling methodology is proposed for evaluating nutrient contents of the living crown. Accepted: 10 August 1995     

Correlation between qualitatively distributed predicting variables and chemical terms in acridine derivatives using principal component analysis

When biological variables are not continuously distributed, the multiple and multivariate regression analysis cannot be used to correlate these variables against chemical regressors. As the employment of discriminant analysis requires the homogeneity of dispersion matrices and, that n_hp where n_h= degree of freedom of hypothesis, p =number of chemical terms, the reliability and validity of this method is highly questionable here. An alternative method is based on the principal component analysis where multicategory variables of drug responses can be classified into measures of inactive, slightly active, sufficiently active, and highly active drugs, for instance. The rules for classification are based on biological sources that can be expressed by chemical terms, too. An example adapted from antitumor action of acridine derivatives shows the working technique.     

The possible roles of nutrient deprivation and auxin repression in apical control

Apical control is the suppression of growth in lower branches by a higher dominant branch or leader shoot. We investigated possible mechanisms involved in this developmental response in three widely diverse species (Japanese morning glory, Ipomoea nil, hybrid poplar, Populus trichocarpa, × P. deltoides, and Douglas-fir, Pseudotsuga menziesii). The following two hypotheses were tested: (1) the mineral nutrient-deprivation hypothesis, which is that the continued growth of the lower branches is repressed by the diversion of nutrients to the upper dominating branch or shoot, and (2) the auxin-repression hypothesis, which is that auxin produced in the upper dominating branch or shoot moves down to the lower branches where continued growth is repressed. The results of experiments involving the manipulation of available nutrients by dominant branch removal and fertilization were consistent with the first hypothesis for morning glory, poplar, and for second- or third flushing of lateral branches in Douglas-fir. The results of the experiments involving auxin (NAA, 1-naphthalene acetic acid) replacement treatments on decapitated shoots bearing growing lateral branches were inconsistent with the second hypothesis in morning glory, poplar and in first-flushing Douglas-fir. However, despite concerns about possible NAA toxic effects, there was evidence of auxin repression of second flushing in Douglas-fir. Overall, the data supported a significant role for nutrient availability but not for auxin repression in apical control of morning glory and poplar. In Douglas-fir, apical control in first-flushing lateral branches from over-wintered buds was largely insensitive to both nutrient availability and auxin repression; however, second flushing was sensitive to both.     

The distribution,abundance and trends in the establishment of the family schilbeidae (osteichthyes: siluriformes) in Lake Kainji,Nigeria

The distribution and abundance of the five species of Schilbeidae in Lake Kainji were studied. The gill net samples showed that Eutropius niloticus was the most abundant and very common species in the lake. Physailia pellucida although greatly under-estimated by the gill nets was the next abundant and fairly common species. Schilbe mystus was not as abundant as the two previous species but was found to be common. Schilbe uranoscopus and Siluranodon auritus were very rare in the Lake. The spatial distribution showed that E. niloticus and P. pellucida occurred in high numbers in the open lake and the shorelines, while S. mystus had its highest number in the riverine areas of the Lake. An upward trend in the abundance of E. niloticus and P. pellucida was indicated while a decrease in the abundance of S. mystus within the lake was noted.     

北京市自然保护区空间布局与三区二带理念

研究的主要目标是北京市自然保护区的空间布局,通过Arcgis软件,矢量化北京市保护区边界,使得自然保护区成为研究底图中的斑块,参照位置的不同,利用Fragstats软件计算聚集度指数（AI）从而提出三区划分的假设,将北京市分成3个大的保护区体系,在此基础之上,计算各个保护区之间的几何最近邻距离（ENN）,证明三区划分的合理性。然后,通过小班数据,分析连接三区廊道之间的土地利用结构,为北京市划分出连接保护区体系的西部山脉廊道和东部水域廊道。最终形成北京市自然保护区分布格局三区二带规划理念。     

The economic value of chaff and straw in arid and temperate zones

Chaff and straw is extensively used as a source of fuel, building material and fodder in arid zones, but this by-product of the cereal harvest is generally under-represented in the archaeobotanical record from north-west Europe. While this is partially a result of differential preservation, the evidence from a number of North African sites suggests that dissimilarities between the two regions in the availability of firewood, grazing and building material play an important role too. Differences in the way wheat and barley were used may represent an additional factor. Three types of use are distinguished: casual ‘use’, intentional local use and use as a commercial commodity, and these can be linked to scales of production and organization in the agricultural system.     

临床分离嗜血杆菌的菌群分布及其耐药性分析

目的调查中山大学附属第一医院嗜血杆菌的临床分布及耐药性情况。方法按照标准方法分离嗜血杆菌并进行药物敏感试验及其检测：结果共分离出146株嗜血杆菌,嗜血杆菌对青霉素敏感率仅为14％,对氨苄西林、头孢克洛、头孢丙烯、莫西沙星、阿奇霉素的敏感率分别为77．9％,98．2％,98．2％,68．7％,98．3％。结论头孢克洛、头孢丙烯、阿奇霉素是治疗嗜血杆菌感染的有效抗生素,应加强对嗜血杆菌的培养及耐药性监测工作。     

抚仙湖不同类型岸带沉水植物分布及水体氮磷特征

2005年6-7月,通过野外断面采样并结合水质分析,对抚仙湖不同类型岸带沉水植物分布及水体氮磷特征进行了调查.结果表明:抚仙湖岸带分为4个类型,岩石陡峭岸带、冲积平缓岸带、河口岸带以及湖湾岸带;沉水植物种类分布最多出现在河口型岸带和湖湾岸带,均为9种;最低出现在岩石陡峭岸带,为5种;沉水植物生物量最高出现在冲积平缓岸带,为8 300 g·m-2,最低出现在岩石陡峭岸带,为2416 g·m-2;沉水植物分布最深为A1岩石陡峭岸带,平均水深8.5 m,最深达到11.0 m;最浅为B2冲积平缓岸带,平均水深1.9 m,最深为6 m;岸带水体综合氮磷指标,以D2湖湾岸带最高,总氮、总磷分别达到5.34和0.145 mg·L-;最低为A2岩石陡峭岸带,总氮、总磷分别为0.87和0.015 mg·L-1抚仙湖沉水植物对水体氮磷的吸收固定总量约为总氮为5.28×104 kg,总磷为7 500 kg.