Hydrolysis of cellulose in SO₃H-functionalized ionic liquids

Influence of acidity and structure of ionic liquids on microcrystalline cellulose (MCC) hydrolysis was investigated. MnCl₂-containing ionic liquids (ILs) were efficient catalysts and achieved MCC conversion rates of 91.2% and selectivities for 5-hydroxymethyl furfural (HMF), furfural and levulinic acid (LA) of 45.7%, 26.2% and 10.5%, respectively. X-ray diffractometry indicated that catalytic hydrolysis of MCC in ionic liquids resulted in the changes to MCC crystallinity and transformation of cellulose I into cellulose II. SO₃H-functionalized ionic liquids showed higher activities than non-functionalized ILs. The simplicity of the chemical transformation of cellulose provides a new approach for the use this polymer as raw material for renewable energy and chemical industries.     

Analytical techniques for vancomycin—A review

Vancomycin belongs to the vancomycin-ristocetin family of glycopeptides, and is a subclass of linear sugar containing peptides composed of seven amino acids. Its stereochemical configuration forms the basis of a particular mode of action, though its complexation with the D-alanyl-D-alanine terminus of peptidoglycon monomer. The glycosylated hexapeptide chain consists of chloro-β-hydroxytyrosines, p-hydroxyphenylglycines, N-methylleucine and aspartic acid forms a rigid molecular frame work and gives the difficulty in the analysis. Vancomycin in the serum samples is usually estimated by liquid chromatography and the bacterial sensitivity was genereally tested by the microbiological assay. The present review deals with the qualitative, quantitative, microbiological and immunological assays and the comparison of the quantitative methods. Clinical implications of vancomycin have also been cited in the review.     

Molecular biology of Ri-plasmid—A review

Agrobacterium rhizogenes transfers a segment of its plasmid to the plant genome. The transferred DNA contains genes which are involved in the synthesis of plant hormones. These genes express in the plant cell and give rise to rooty-tumors at the infection site. Transgenic plants can be readily regenerated from the rooty-tumors and the transferred DNA is transmitted to progeny plants. High regeneration potential and sustained maintenance of transferred DNA makes the bacterium a suitable vector for plant genetic engineering. DNA sequences homologous to the transferred DNA ofAgrobacterium rhizogenes were detected in some untransformed plant species suggesting a past infection byAgrobacterium rhizogenes during evolution of some genera, notably Nicotiana.     

“Water-like” ammonium-based ionic liquids for lipase activation and enzymatic polymerization

Novel dual-functionalized ammonium-based hydrophobic ionic liquids (ILs) have been synthesized by mimicking the water structure to carry both ether group (hydrogen-bond acceptor) and tert-alcohol group (hydrogen-bond donor). These ammonium-type ionic solvents exhibit the advantage of lower viscosities (as low as 129 mPa s at 30 °C) than the imidazolium analogue (∼300 mPa s at 30 °C); more importantly, these “water-like” media are highly compatible with immobilized Candida antarctica lipase B (Novozym 435) in terms of producing high transesterification activities (1.5-fold higher than that in tert-butanol, and slightly higher than that in diisopropyl ether) and higher thermal stability than that in tert-butanol. To demonstrate the utilization of this new solvent system, enzymatic ring-opening polymerization (ROP) of ε-caprolactone using these “water-like” ILs as co-solvents was carried out to synthesize polyesters, achieving high molecular mass M_w (up to 18,000 Da) and high yields (up to 74 %).     

Metagenomic cellulases highly tolerant towards the presence of ionic liquids—linking thermostability and halotolerance

Cellulose is an important renewable resource for the production of bioethanol and other valuable compounds. Several ionic liquids (ILs) have been described to dissolve water-insoluble cellulose and/or wood. Therefore, ILs would provide a suitable reaction medium for the enzymatic hydrolysis of cellulose if cellulases were active and stable in the presence of high IL concentrations. For the discovery of novel bacterial enzymes with elevated stability in ILs, metagenomic libraries from three different hydrolytic communities (i.e. an enrichment culture inoculated with an extract of the shipworm Teredo navalis, a biogas plant sample and elephant faeces) were constructed and screened. Altogether, 14 cellulolytic clones were identified and subsequently assayed in the presence of six different ILs. The most promising enzymes, CelA2, CelA3 (both derived from the biogas plant) and CelA84 (derived from elephant faeces), showed high activities (up to 6.4 U/mg) in the presence of 30% (v/v) ILs. As these enzymes were moderately thermophilic and halotolerant, they retained 40% to 80% relative activity after 34 days in 4 M NaCl, and they were benchmarked with two thermostable enzymes, CelA from Thermotoga maritima and Cel5K from a metagenome library derived from Avachinsky crater in Kamchatka. These enzymes also exhibited high activity (up to 11.1 U/mg) in aqueous IL solutions (30% (v/v)). Some of the enzymes furthermore exhibited remarkable stability in 60% (v/v) IL. After 4 days, CelA3 and Cel5K retained up to 79% and 100% of their activity, respectively. Altogether, the obtained data suggest that IL tolerance appears to correlate with thermophilicity and halotolerance.     

Modeling stability and flexibility of α-Chymotrypsin in room temperature ionic liquids

We investigate the structure and dynamics of α-Chymotrypsin in five room temperature ionic liquids (RTILs) sharing a common cation, hydrated with different water percentages (w/w) (weight of water over protein). Results from molecular dynamics simulations are correlated with experimental evidences from studies on the activity of enzymes in RTILs. α-Chymotrypsin protein structure is closer to its native crystallographic structure in RTILs than in aqueous environment. We show that the structural properties of α-Chymotrypsin were affected by the water concentration assayed in a typical bell-shaped profile, which is also frequently reported for organic solvents. The protein structure was more native like at 10–20% of water (w/w) for all RTILs except for [BMIM][Cl]. We found that the fluctuations of the main chain in [BMIM][BF₄] and [BMIM][TfO] were not significantly affected by the increasing amount of water. However, we were able to show that the flexible regions were the ones more hydrated, indicating that water is responsible for the flexibility of the protein. The solvation of the enzyme in water-immiscible RTILs, such as [BMIM][PF₆] and [BMIM][Tf₂N] lead to higher enzyme flexibility at increased water content. Enzyme solvation by [BMIM][Cl] resulted in ion penetration in the core enzyme structure, causing incremented flexibility and destabilization at low water percentages. All RTILs stripped water molecules from the protein surface, following a similar behavior also found in organic solvents. Anions formed structured arrangements around the protein, which allowed non-stripped water molecules to localize on the protein surface.     

Statistical review of animal trials—A guideline

Any experiment involving living organisms requires justification of the need and moral defensibleness of the study. Statistical planning, design, and sample size calculation of the experiment are no less important review criteria than general medical and ethical points to consider. Errors made in the statistical planning and data evaluation phase can have severe consequences on both results and conclusions. They might proliferate and thus impact future trials—an unintended outcome of fundamental research with profound ethical consequences. Unified statistical standards are currently missing for animal review boards in Germany. In order to accompany, we developed a biometric form to be filled and handed in with the proposal at the concerned local authority on animal welfare. It addresses relevant points to consider for biostatistical planning of animal experiments and can help both the applicants and the reviewers in overseeing the entire experiment(s) planned. Furthermore, the form might also aid in meeting the current standards set by the 3+3R's principle of animal experimentation: Replacement, Reduction, Refinement as well as Robustness, Registration, and Reporting. The form has already been in use by the concerned local authority of animal welfare in Berlin, Germany. In addition, we provide reference to our user guide giving more detailed explanation and examples for each section of the biometric form. Unifying the set of biostatistical aspects will help both the applicants and the reviewers to equal standards and increase quality of preclinical research projects, also for translational, multicenter, or international studies.     

Immobilization of cellulase through its carbohydrate side chains — A rationale for its recovery and reuse

The major types of components of cellulase [see 1,4-(1, 3;1,4)-β-d-glucan 4-glucanohydrolase, EC 3.2.1.4] have been adsorbed onto concanavalin A immobilized on Sepharose 4B, suggesting that they are glycoproteins. These components were covalently coupled to cyanogen bromide-activated Sepharose after aminoalkylation of their periodate-oxidized carbohydrate side chains to provide additional points of attachment of the enzyme to the support. Although there was only a 9% recovery of starting avicelase activity, the immobilized enzyme catalysed the hydrolysis of insoluble cellulose to glucose with greater efficiency than did free cellulase.     

Film forming microbial biopolymers for commercial applications—A review

Abstract

Microorganisms synthesize intracellular, structural and extracellular polymers also referred to as biopolymers for their function and survival. These biopolymers play specific roles as energy reserve materials, protective agents, aid in cell functioning, the establishment of symbiosis, osmotic adaptation and support the microbial genera to function, adapt, multiply and survive efficiently under changing environmental conditions. Viscosifying, gelling and film forming properties of these have been exploited for specific significant applications in food and allied industries. Intensive research activities and recent achievements in relevant and important research fields of global interest regarding film forming microbial biopolymers is the subject of this review. Microbial polymers such as pullulan, kefiran, bacterial cellulose (BC), gellan and levan are placed under the category of exopolysaccharides (EPS) and have several other functional properties including film formation, which can be used for various applications in food and allied industries. In addition to EPS, innumerable bacterial genera are found to synthesis carbon energy reserves in their cells known as polyhydroxyalkanoates (PHAs), microbial polyesters, which can be extruded into films with excellent moisture and oxygen barrier properties. Blow moldable biopolymers like PHA along with polylactic acid (PLA) synthesized chemically in vitro using lactic acid (LA), which is produced by LA bacteria through fermentation, are projected as biodegradable polymers of the future for packaging applications. Designing and creating of new property based on requirements through controlled synthesis can lead to improvement in properties of existing polysaccharides and create novel biopolymers of great commercial interest and value for wider applications. Incorporation of antimicrobials such as bacteriocins or silver and copper nanoparticles can enhance the functionality of polymer films especially in food packaging applications either in the form of coatings or wrappings. Use of EPS in combinations to obtain desired properties can be evaluated to increase the application range. Controlled release of active compounds, bioactive protection and resistance to water can be investigated while developing new technologies to improve the film properties of active packaging and coatings. An holistic approach may be adopted in developing an economical and biodegradable packaging material with acceptable properties. An interdisciplinary approach with new innovations can lead to the development of new composites of these biopolymers to enhance the application range. This current review focuses on linking and consolidation of recent research activities on the production and applications of film forming microbial polymers like EPS, PHA and PLA for commercial applications.     

Composition and digestibility of untreated and chemically treated animal excreta for ruminants—A review

The paper reports on the crude nutrient content and the mineral profile, as well as the apparent digestibility by ruminants, of faeces of poultry, pigs and cattle, poultry litter and solid matter of poultry, pig and cattle slurries. The second part of the paper deals with chemical treatment of pig and cattle slurry solids with NaOH, KOH and urea.Nutrient and mineral content as well as digestibility of animal excreta are greatly influenced by species, age and type of feeding, the bedding material used and the method of solid-liquid separation of slurries.The digestibility of poultry excreta is higher than that of pig waste. Cattle faeces are unsuitable as feeds even after chemical treatment.In sacco degradability, apparent digestibility, energy content and intake of pig slurry solids were increased by treatment with urea, NaOH and KOH. Level of chemicals used and temperature influenced the effect of treatment. Wet pig-slurry solids may be preserved with urea.     

Plantamajoside — A current review

Plantamajoside is a bioactive caffeic acid derivative, a dihydroxyphenethyl glucoside in the group of polyphenolic compounds. It is one of the principal caffeic acid glycoside in the Plantago Digitalis, Hemiphragma, Lagotis, Picrorhiza, Rehmannia, Veronica, Wulfeniopsis and Wulfenia genera within the Plantaginaceae family. This compound is also present in the genera Aeschynanthus and Chirita of the Gesneriaceae family and the genus Boschniakia of the Orobanchaceae family. Plantamajoside is present in the greatest concentrations in roots of young plants, but it is also found in seeds, flower stalks, stems, leaves, in vivo cultivated plant cells and transgenic root cultures. Plantamajoside is used as a biomarker in chemotaxonomical studies, and is a compound with numerous biological applications and considerable pharmacological potential. It is a protective agent against ultra-violet light in plants and acts as antioxidant agent with very low toxicity. In addition, plantamajoside can also be industrially synthesized. This review aims to give an overview of plantamajoside in various plantago species as well as its potential as a biomarker and as a new drug compound.     

Precision nutrition — review of methods for point-of-care assessment of nutritional status

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Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

Since the endosymbiont origin from α-Proteobacteria, mitochondrial genomes have undergone extremely divergent evolutionary trajectories among eukaryotic lineages. Compared with the relatively compact and conserved animal mitochondrial genomes, plant mitochondrial genomes have many unique features, especially their large and complex genomic arrangements. The sizes of fully sequenced plant mitochondrial genomes span over a 100-fold range from 66 kb in Viscum scurruloideum to 11 000 kb in Silene conica. In addition to the typical circular structure, some species of plants also possess linear, and even multichromosomal, architectures. In contrast with the thousands of fully sequenced animal mitochondrial genomes and plant plastid genomes, only around 200 fully sequenced land plant mitochondrial genomes have been published, with many being only draft assemblies. In this review, we summarize some of the known novel characteristics found in plant mitochondrial genomes, with special emphasis on multichromosomal structures described in recent publications. Finally, we discuss the future prospects for studying the inheritance patterns of multichromosomal plant mitochondria and examining architectural variation at different levels of taxonomic organization—including at the population level.     

Molecular genetics of preeclampsia and HELLP syndrome — A review

Preeclampsia is characterised by new onset hypertension and proteinuria and is a major obstetrical problem for both mother and foetus. Haemolysis elevated liver enzymes and low platelets (HELLP) syndrome is an obstetrical emergency and most cases occur in the presence of preeclampsia. Preeclampsia and HELLP are complicated syndromes with a wide variety in severity of clinical symptoms and gestational age at onset. The pathophysiology depends not only on periconceptional conditions and the foetal and placental genotype, but also on the capability of the maternal system to deal with pregnancy. Genetically, preeclampsia is a complex disorder and despite numerous efforts no clear mode of inheritance has been established. A minor fraction of HELLP cases is caused by foetal homozygous LCHAD deficiency, but for most cases the genetic background has not been elucidated yet. At least 178 genes have been described in relation to preeclampsia or HELLP syndrome. Confined placental mosaicism (CPM) is documented to cause early onset preeclampsia in some cases; the overall contribution of CPM to the occurrence of preeclampsia has not been adequately investigated yet. This article is part of a Special Issue entitled: Molecular Genetics of Human Reproductive Failure.     

Federal plant introduction—A review

In 1898 the U. S. Department of Agriculture be?an importation of economically important plants for possible cultivation and utilization in the United States. Since then nearly a quarter million introductions have been made, including the hard winter wheats which today are ?rown annually on some 27 million acres, and soybeans which now support a billion-dollar industry.