Interplay between α-synuclein amyloid formation and membrane structure

Amyloid formation is a pathological hallmark of many neurodegenerative diseases, including Alzheimer's, Parkinson's, and Huntington's. While it is unknown how these disorders are initiated, in vitro and cellular experiments confirm the importance of membranes. Ubiquitous in vivo, membranes induce conformational changes in amyloidogenic proteins and in some cases, facilitate aggregation. Reciprocally, perturbations in the bilayer structure can be induced by amyloid formation. Here, we review studies in the last 10 years describing α-synuclein (α-syn) and its interactions with membranes, detailing the roles of anionic and zwitterionic lipids in aggregation, and their contribution to Parkinson's disease. We summarize the impact of α-syn - comparing monomeric, oligomeric, and fibrillar forms - on membrane structure, and the effect of membrane remodeling on amyloid formation. Finally, perspective on future studies investigating the interplay between α-syn aggregation and membranes is discussed. This article is part of a Special Issue entitled: Amyloids.     

Interplay between Sumoylation and Phosphorylation for Protection against α-Synuclein Inclusions

Parkinson disease is associated with the progressive loss of dopaminergic neurons from the substantia nigra. The pathological hallmark of the disease is the accumulation of intracytoplasmic inclusions known as Lewy bodies that consist mainly of post-translationally modified forms of α-synuclein. Whereas phosphorylation is one of the major modifications of α-synuclein in Lewy bodies, sumoylation has recently been described. The interplay between α-synuclein phosphorylation and sumoylation is poorly understood. Here, we examined the interplay between these modifications as well as their impact on cell growth and inclusion formation in yeast. We found that α-synuclein is sumoylated in vivo at the same sites in yeast as in human cells. Impaired sumoylation resulted in reduced yeast growth combined with an increased number of cells with inclusions, suggesting that this modification plays a protective role. In addition, inhibition of sumoylation prevented autophagy-mediated aggregate clearance. A defect in α-synuclein sumoylation could be suppressed by serine 129 phosphorylation by the human G protein-coupled receptor kinase 5 (GRK5) in yeast. Phosphorylation reduced foci formation, alleviated yeast growth inhibition, and partially rescued autophagic α-synuclein degradation along with the promotion of proteasomal degradation, resulting in aggregate clearance in the absence of a small ubiquitin-like modifier. These findings suggest a complex interplay between sumoylation and phosphorylation in α-synuclein aggregate clearance, which may open new horizons for the development of therapeutic strategies for Parkinson disease.     

The first eukaryotic cells — Acid hot-spring algae

The Cyanidiophyceae members (PreRhodophyta) may serve as a transitional algal group bridging the cyanobacteria and the unicellular Rhodophyta. This thermoacidic algal group is composed of three genera containing several species. We suggested placing these algae in progressively evolutionary steps: (Cyanidioschyzon Cyanidium Galdieria). This evolutional ladder is based upon various areas of research like biochemistry, amount of nuclear genome and shape of chloroplast nucleoid, ultrastructure and ecological aspects. The first alga —Cyanidioschyzon — is the cornerstone of this succession; it shows mixed features between cyanobacterium and archaebacteria(Thermoplasma-like cell). It demonstrates simple eukaryotic cellular features and has the smallest amount of nuclear and chloroplast DNA. The intermediate alga in this line,Cyanidium, is also a simple cell, but shows more progressive characterizations than theCyanidioschyzon. The third taxon,Galdieria, is already very close to the unicellular rhodophytes (red algae) and indicates typical advanced eukaryotic characterization. We propose thatCyanidioschyzon (considered to be the simplest eukaryote) may have evolved from an association betweenThermoplasma-like archaebacterium and a thermophilic cyanobacterium. Autogenous (non-symbiotic) compartmental steps may have taken place fromCyanidioschyzon toCyanidium and then toGaldieria, and from this alga (group) towards the other unicellular red algae.Dedicated toDr. Jerome F. Fredrick, an enthusiast of our favorite algaCyanidium, on his retirement from directorship of Dodge Chemical Laboratories in Bronx, NYC.     

Interplay between NAD+ and acetyl‑CoA metabolism in ischemia-induced mitochondrial pathophysiology

Brain injury caused by ischemic insult due to significant reduction or interruption in cerebral blood flow leads to disruption of practically all cellular metabolic pathways. This triggers a complex stress response followed by overstimulation of downstream enzymatic pathways due to massive activation of post-translational modifications (PTM). Mitochondria are one of the most sensitive organelle to ischemic conditions. They become dysfunctional due to extensive fragmentation, inhibition of acetyl‑CoA production, and increased activity of NAD⁺ consuming enzymes. These pathologic conditions ultimately lead to inhibition of oxidative phosphorylation and mitochondrial ATP production. Both acetyl‑CoA and NAD⁺ are essential intermediates in cellular bioenergetics metabolism and also serve as substrates for post-translational modifications such as acetylation and ADP‑ribosylation. In this review we discuss ischemia/reperfusion-induced changes in NAD⁺ and acetyl‑CoA metabolism, how these affect relevant PTMs, and therapeutic approaches that restore the physiological levels of these metabolites leading to promising neuroprotection.     

Interplay between PKCδ and Sp1 on histone deacetylase inhibitor-mediated Epstein-Barr virus reactivation

Epstein-Barr virus (EBV) undergoes latent and lytic replication cycles, and its reactivation from latency to lytic replication is initiated by expression of the two viral immediate-early transactivators, Zta and Rta. In vitro, reactivation of EBV can be induced by anti-immunoglobulin, tetradecanoyl phorbol acetate, and histone deacetylase inhibitor (HDACi). We have discovered that protein kinase C delta (PKCδ) is required specifically for EBV reactivation by HDACi. Overexpression of PKCδ is sufficient to induce the activity of the Zta promoter (Zp) but not of the Rta promoter (Rp). Deletion analysis revealed that the ZID element of Zp is important for PKCδ activation. Moreover, the Sp1 putative sequence on ZID is essential for PKCδ-induced Zp activity, and the physiological binding of Sp1 on ZID has been confirmed. After HDACi treatment, activated PKCδ can phosphorylate Sp1 at serine residues and might result in dissociation of the HDAC2 repressor from ZID. HDACi-mediated HDAC2-Sp1 dissociation can be inhibited by the PKCδ inhibitor, Rotterlin. Furthermore, overexpression of HDAC2 can suppress the HDACi-induced Zp activity. Consequently, we hypothesize that HDACi induces PKCδ activation, causing phosphorylation of Sp1, and that the interplay between PKCδ and Sp1 results in the release of HDAC2 repressor from Zp and initiation of Zta expression.     

A Note from Editorial Board——for reviews of eukaryotic cell evolution

Last July, an old friend of Editor-in-Chief Dr. Zhen YAO, Dr. Jing Yan LI, who has been studying for years the origin of cell nucleus, visited Shanghai, and they made some discussion about his views on the importance of molecular biology approach to eukaryotic cell evolution and its possible bearing to the progress of contemporary     

Are goose nesting success and lemming cycles linked? Interplay between nest density and predators

The suggested link between lemming cycles and reproductive success of arctic birds is caused by potential effects of varying predation pressure (the Alternative Prey Hypothesis, APH) and protective association with birds of prey (the Nesting Association Hypothesis, NAH). We used data collected over two complete lemming cycles to investigate how fluctuations in lemming density were associated with nesting success of greater snow geese ( Anser caerulescens atlanticus ) in the Canadian High Arctic. We tested predictions of the APH and NAH for geese breeding at low and high densities. Goose nesting success varied from 22% to 91% between years and the main egg predator was the arctic fox ( Alopex lagopus ). Nesting associations with snowy owls ( Nyctea scandiaca ) were observed but only during peak lemming years for geese nesting at low density. Goose nesting success declined as distance from owls increased and reached a plateau at 550 m. Artificial nest experiments indicated that owls can exclude predators from the vicinity of their nests and thus reduce goose egg predation rate. Annual nest failure rate was negatively associated with rodent abundance and was generally highest in low lemming years. This relationship was present even after excluding goose nests under the protective influence of owls. However, nest failure was inversely density-dependent at high breeding density. Thus, annual variations in nest density influenced the synchrony between lemming cycles and oscillations in nesting success. Our results suggest that APH is the main mechanism linking lemming cycles and goose nesting success and that nesting associations during peak lemming years (NAH) can enhance this positive link at the local level. The study also shows that breeding strategies used by birds (the alternative prey) could affect the synchrony between oscillations in avian reproductive success and rodent cycles.     

Not Just a Sum? Identifying Different Types of Interplay between Constituents in Combined Interventions

Motivation

Experiments in which the effect of combined manipulations is compared with the effects of their pure constituents have received a great deal of attention. Examples include the study of combination therapies and the comparison of double and single knockout model organisms. Often the effect of the combined manipulation is not a mere addition of the effects of its constituents, with quite different forms of interplay between the constituents being possible. Yet, a well-formalized taxonomy of possible forms of interplay is lacking, let alone a statistical methodology to test for their presence in empirical data.

Results

Starting from a taxonomy of a broad range of forms of interplay between constituents of a combined manipulation, we propose a sound statistical hypothesis testing framework to test for the presence of each particular form of interplay. We illustrate the framework with analyses of public gene expression data on the combined treatment of dendritic cells with curdlan and GM-CSF and show that these lead to valuable insights into the mode of action of the constituent treatments and their combination.

Availability and Implementation

R code implementing the statistical testing procedure for microarray gene expression data is available as supplementary material. The data are available from the Gene Expression Omnibus with accession number GSE32986.     

Lactobacillus acidophilus—Rutin Interplay Investigated by Proteomics

Dietary polyphenols are bioactive molecules that beneficially affect human health, due to their anti-oxidant, anti-inflammatory, cardio-protective and chemopreventive properties. They are absorbed in a very low percentage in the small intestine and reach intact the colon, where they are metabolized by the gut microbiota. Although it is well documented a key role of microbial metabolism in the absorption of polyphenols and modulation of their biological activity, molecular mechanisms at the basis of the bacteria-polyphenols interplay are still poorly understood. In this context, differential proteomics was applied to reveal adaptive response mechanisms that enabled a potential probiotic Lactobacillus acidophilus strain to survive in the presence of the dietary polyphenol rutin. The response to rutin mainly modulated the expression level of proteins involved in general stress response mechanisms and, in particular, induced the activation of protein quality control systems, and affected carbohydrate and amino acid metabolism, protein synthesis and cell wall integrity. Moreover, rutin triggered the expression of proteins involved in oxidation-reduction processes.This study provides a first general view of the impact of dietary polyphenols on metabolic and biological processes of L. acidophilus.     

Cross talk between protein kinase CK2 and eukaryotic translation initiation factor eIF2β subunit

The β-subunit of eukaryotic translation initiation factor eIF2 is a substrate and a partner for protein kinase CK2. Surface plasmon resonance analysis shows that the truncated form corresponding to residues 138–333 of eIF2β (eIF2β-CT) interacts with CK2α as efficiently as full length eIF2β, whereas the form corresponding to residues 1–137, which contains the CK2 phosphorylation sites, (eIF2β-NT) does not bind. The use of different mutants and truncated forms of CK2α allowed us to map the basic segment K74–K83 at the beginning of helix αC and residues R191R195K198 in the p+1 loop as the main determinants for the binding to eIF2β-CT of either the isolated CK2α subunit or the CK2 holoenzyme. The presence of eIF2β-CT stimulated the activity of CK2α towards the RRRAADSDDDDD peptide substrate; effect that was not observed with the CK2α K74-77A whose ability to bind to eIF2β-CT is severely impaired. Gel filtration analysis confirmed the ability of CK2α to form complexes with eIF2β-CT, and the contribution of the basic cluster in CK2α (K74–K77) in this association.     

Interplay between Solo and keratin filaments is crucial for mechanical force–induced stress fiber reinforcement

Mechanical force–induced cytoskeletal reorganization is essential for cell and tissue remodeling and homeostasis; however, the underlying cellular mechanisms remain elusive. Solo (ARHGEF40) is a RhoA-targeting guanine nucleotide exchange factor (GEF) involved in cyclical stretch–induced human endothelial cell reorientation and convergent extension cell movement in zebrafish gastrula. In this study, we show that Solo binds to keratin-8/keratin-18 (K8/K18) intermediate filaments through multiple sites. Solo overexpression promotes the formation of thick actin stress fibers and keratin bundles, whereas knockdown of Solo, expression of a GEF-inactive mutant of Solo, or inhibition of ROCK suppresses stress fiber formation and leads to disorganized keratin networks, indicating that the Solo-RhoA-ROCK pathway serves to precisely organize keratin networks, as well as to promote stress fibers. Of importance, knockdown of Solo or K18 or overexpression of GEF-inactive or deletion mutants of Solo suppresses tensile force–induced stress fiber reinforcement. Furthermore, knockdown of Solo or K18 suppresses tensile force-induced RhoA activation. These results strongly suggest that the interplay between Solo and K8/K18 filaments plays a crucial role in tensile force–induced RhoA activation and consequent actin cytoskeletal reinforcement.     

Interplay between αvβ3 Integrin and Nucleolin Regulates Human Endothelial and Glioma Cell Migration

The multifunctional protein nucleolin (NCL) is overexpressed on the surface of activated endothelial and tumor cells and mediates the stimulatory actions of several angiogenic growth factors, such as pleiotrophin (PTN). Because α_vβ₃ integrin is also required for PTN-induced cell migration, the aim of the present work was to study the interplay between NCL and α_vβ₃ by using biochemical, immunofluorescence, and proximity ligation assays in cells with genetically altered expression of the studied molecules. Interestingly, cell surface NCL localization was detected only in cells expressing α_vβ₃ and depended on the phosphorylation of β₃ at Tyr⁷⁷³ through receptor protein-tyrosine phosphatase β/ζ (RPTPβ/ζ) and c-Src activation. Downstream of α_vβ_3, PI3K activity mediated this phenomenon and cell surface NCL was found to interact with both α_vβ₃ and RPTPβ/ζ. Positive correlation of cell surface NCL and α_vβ₃ expression was also observed in human glioblastoma tissue arrays, and inhibition of cell migration by cell surface NCL antagonists was observed only in cells expressing α_vβ₃. Collectively, these data suggest that both expression and β₃ integrin phosphorylation at Tyr⁷⁷³ determine the cell surface localization of NCL downstream of the RPTPβ/ζ/c-Src signaling cascade and can be used as a biomarker for the use of cell surface NCL antagonists as anticancer agents.     

The Interplay of Tau Protein and β-Amyloid: While Tauopathy Spreads More Profoundly Than Amyloidopathy,Both Processes Are Almost Equally Pathogenic

Cellular and Molecular Neurobiology - Alzheimer’s disease (AD) is a neurodegenerative disorder, in which amyloid precursor protein (APP) misprocessing and tau protein hyperphosphorylation are...     

Exploded worlds — Text as a metaphor for ethnography (and vice versa)

Conclusion There is a class of scholars who seek to write about and perpetuate the culture of all those who do not write about and perpetuate their own culture. Do these scholars write about and perpetuate their own culture?Paul Ricouer and others have put forward the text metaphor for social science production — for what we produce and the way we work with it. It is one of many metaphors that we anthropologists have available to enable us to grasp better our challenging and so often inchoate enterprise. I have expressed misgivings about this metaphor because it takes us back into a world, the academic one, where we do not really belong — with its concerns for distance, invariance, truth value — and away from a world — the variable and voluble world of discourse — where anthropology should be at work if not at home. It is also a metaphor that can beguile us into ignoring the pervasiveness of self-reference and self-replication in our (the intellectual's) creation of worlds and surely in our anthropological creation of other people's worlds. As the pronouns are the fundamental entities of the world of discourse, we have focused on what we can learn from them about the dynamics of self-reference and reference and particularly about the parlous shift from talking to persons — as with the first two persons of discourse — to talking about persons — which is to say the third or absent person of discourse. The pronouns also teach us about turn-taking. Here also one has misgivings about the text metaphor for it takes us into altogether too sui generis a world of the scholar alone with his writings and his imagined or self-created audience for those writings. It is the world of the I perpetually talking and the other perpetually listening. Anthropology in contrast works on the other side of turn-taking where we emphasize the other as an I talking and we ourselves as a you listening. In a world where the powerful military-industrial centers of things do most of the talking, it is altogether appropriate that the peripheries should have their turn through the work of anthropology. That those voices should be heard is a fundamental anthropological task.We should not pretend in the conclusion, however, that the channel for hearing those voices is absolutely clear and unimpeded by self-reference — from the insertion, as it were, of the anthropologist's own voice. We do not escape the need to negotiate these various voices. And for that reason I have placed as an epigraph to the conclusion a rephrasing for the anthropologist of Epimenides' paradox. It is a rephrasing that evokes the paradox involved in giving voice to the voices of others. but to recognize the problem at the very center of our enterprise does not justify the abandonment of that enterprise nor the admirable and unique efforts at turn-taking that characterize the calling of anthropologists.James W. Fernandez is Professor of Anthropology at Princeton University, Princeton, NJ.