Alterations in alveolar basement membranes during postnatal lung growth

We studied the ultrastructural characteristics of alveolar basement membranes (ABM) and capillary basement membranes (CBM) in rat lungs at birth, at 8-10 d of age, during alveolar formation, and at 6-10 wk of age, after most alveoli have formed. We also measured in vitro lung proteoglycan and heparan sulfate synthesis at each age. We noted three major age-related changes in pulmonary basement membranes. (a) Discontinuities in the ABM through which basilar cytoplasmic foot processes extend are present beneath alveolar type-2 cells but not alveolar type-1 cells. These discontinuities are most prevalent at birth but also exist in the adult. (b) Discontinuities are also present in CBM at the two earliest time points but are maximal at 8 d of age rather than at birth. Fusions between ABM and CBM are often absent at 8 d of age, but CBM and CBM/ABM fusions were complete in the adult. (c) Heparan sulfate proteoglycans identified with ruthenium red and selective enzyme degradation are distributed equally on epithelial and interstitial sides of the ABM lamina densa at birth, but decrease on the interstitial side with age. In vitro proteoglycan and heparan sulfate accumulation at birth was two times that at 8 d and five times that in the adult. Discontinuities in ABM allow epithelial-mesenchymal interactions that may influence type-2 cells cytodifferentiation. Discontinuities in CBM suggest that capillary proliferation and neovascularization are associated with alveolar formation at 8 d. When CBM becomes complete and forms junctions with ABM, lung neovascularization likely ends as does the ability to form new alveoli.     

Comparative survivorship and life history of painted greenling (Oxylebius pictus) in Puget Sound,Washington and Monterey Bay,California

Synopsis The painted greenling, Oxylebius pictus, a hexagrammid fish of shallow, northeastern Pacific rocky habitats was observed and collected near the center of its range at Monterey Bay, California, and near the northern limit of its distribution at Puget Sound. Life history characteristics were compared for breeding stocks from the two areas. Mean and maximum adult body sizes (lengths and wet weights) and longevities of both sexes are greater at Puget Sound. Also, both males and females reach sexual maturity at a smaller body length at Monterey. Age group 0 and I juveniles are twice as abundant as adults at Monterey but rare at Puget Sound. Monterey females have greater relative fecundities. Egg development rates are similar at equivalent temperatures; eggs are smaller, however, at Monterey, and thus embryos are smaller at hatching. Length increase is faster for Puget Sound juveniles; adult fish in the two areas grow in length at comparable rates, although weight per body length is consistently greater for Monterey fish. These findings reflect a poorer survivorship at Monterey, where natural predation on fertilized eggs and the mortality rates of adult males are greater.     

Patterns of endangerment in the hawaiian flora

The Hawaiian flora, because of its great isolation, high levels of endemism, known lineages, and high rates of endangerment, offers unique opportunities to explore patterns of endangerment related to phylogeny, ecological and life history traits, and geographic patterns. Nine percent of the native flora of 1159 taxa are already extinct, and 52.5% are at risk (extinct, endangered, vulnerable, or rare). Risk is strongly associated with limited geographic distribution at several scales: endemic taxa (native only to the Hawaiian Islands) are at far greater risk than indigenous taxa (with both Hawaiian and extra-Hawaiian ranges); single-island endemics are more at risk than multi-island endemics; small islands have the highest proportion of endemic taxa at risk; and endemics with more limited habitat distributions (elevation, community type) are more at risk. Historic population density is a strong predictor of risk, and taxa with low historic population densities are at greatest risk with rapid anthropogenic changes. Among the major islands, Maui Nui has the highest percent of taxa that are extinct. Kaua'i has the lowest percent of extinct taxa and the highest proportion of single-island endemic taxa that are rare. Endemic taxa at risk are associated with distributions in shrublands, forests, bogs, and cliff habitats. Endemic taxa with distributions in low elevation dry habitats have the highest proportion of taxa at risk, but the greatest absolute numbers of taxa at risk have distributions in mesic lowland and montane forests, and in wet montane forests. The life history patterns associated with risk are complicated, and inclusion of the effects of evolutionary relationships (lineages) changes some of these patterns. Species level analyses without respect to lineage shows risk associated with monomorphic (hermaphroditic) breeding systems and bird pollination because of the large number of hermaphroditic, bird-pollinated species in the Campanulaceae. Analyses incorporating the effect of lineage greatly reduce the impact of large lineages and result in an association of risk with insect pollination, and no effect of breeding system. There is no association of lineage size and the percent of taxa at risk within the lineage; endemic taxa from lineages with large radiations are at no greater risk than endemic single-taxon lineages. The percentages of taxa at risk at the family level in the Hawaiian Islands and worldwide (excluding Hawaiian taxa) are positively correlated, although flowering plant families in the Hawaiian Islands have a much greater proportion of taxa at risk. Some of the approaches described here may be useful to predict geographical and biological patterns of endangerment in island and island-like ecosystems under increasing pressures of endangerment and extinction.     

Lower environmental temperature delays and prolongs myogenic regulatory factor expression and muscle differentiation in rainbow trout (Onchrhynchus mykiss) embryos.

The effect of different temperatures (4 degrees C and 12 degrees C) on myogenic regulatory factors (MyoD and myogenin) and myosin heavy chain (MyHC) expression was investigated in rainbow trout (Onchrhynchus mykiss) during early development. MyoD is first switched on at stage 14 [about 5 somites are formed (1/2 epiboly)] while myogenin mRNA is expressed at stage 15 [around 15 somites are visible (2/3 epiboly)] at both temperatures. Subsequently (up to at least stage 20), the most caudal somites exhibit less myogenin mRNA at 4 degrees C compared to 12 degrees C. At the eyed stage (stage 23-24), both myogenin mRNA and protein are present in greater amounts throughout all myotomes at the lower temperature, with mRNA levels in warmer (12 degrees C) embryos at 83% for MyoD and 72% for myogenin of the levels seen in 4 degrees C embryos. Conversely, however, at this same stage, fast-MyHC mRNA and protein are more abundant in 12 degrees C than in 4 degrees C embryos. This indicates relatively advanced muscle differentiation at the warmer temperature. At hatching, myogenin-positive cells are concentrated within the myosepta at both temperatures and they are also sparsely distributed in the myotome at 4 degrees C, but not at 12 degrees C. MyoD, myogenin, and MyHC levels provide an indication of differentiation of muscle cells. These findings suggest that myogenic regulatory factor expression is delayed but prolonged by the lowering of temperature.     

Multilocus selection in subdivided populations II. Maintenance of polymorphism under weak or strong migration

The potential of maintaining multilocus polymorphism by migration-selection balance is studied. A large population of diploid individuals is distributed over finitely many demes connected by migration. Generations are discrete and nonoverlapping, selection may vary across demes, and loci are multiallelic. It is shown that if migration and recombination are strong relative to selection, then with weak or no epistasis and intermediate dominance at every locus and in every deme, arbitrarily many alleles can be maintained at arbitrarily many loci at a stable equilibrium. If migration is weak relative to selection and recombination, then with weak or no epistasis and intermediate dominance at every locus and in every deme, as many alleles as there are demes can be maintained at arbitrarily many loci at equilibrium. In both cases open sets of such parameter combinations are constructed, thus the results are robust with respect to small, but arbitrary, perturbations in the parameters. For weak migration, the number of demes is, in fact, a generic upper bound to the number of alleles that can be maintained at any locus. Thus, several scenarios are identified under which multilocus polymorphism can be maintained by migration-selection balance when this is impossible in a panmictic population.      

小叶章种群高度的季节动态

探讨了三江平原以小叶章为优势种的典型草旬、沼泽化草甸、沼泽３个植被类型中小叶章种群高度的变化规律。结果表明,在３个类型中,种群高度的季节动态均呈单峰型,极大值均出现在７月末,分别为１１２．６７ｃｍ、１０１．６１ｃｍ、８３．８８ｃｍ。ＨＡＧＲ的季节动态在７月末之前〉０,之后〈０;典型草甸和沼泽化草甸的极大值出现在６月末至７月中旬,沼泽则出现在６月中旬至６月末;极小值典型草甸出现在８月末至９月中旬,而     

MITOSIS AND CYTOKINESIS IN PLATYMONAS SUBCORDIFORMIS,A SCALY GREEN MONAD1

Scaly green monads are often placed in a separate class, Prasinophyceae, and have been considered to be among the most, primitive of green algae. Platymonas possesses rhizoplasts which resemble sarcomeric structures. At prophase, extranuclear spindle micro-tubules emanate from a granular region which appears to arise through dissolution or dispersion of the rhizoplasts. It is probable that the rhizoplasts are largely consumed during the formation of the spindle and only small fragments are left at metaphase. The rhizoplasts can be seen again at telophase but are short at this stage. The basal bodies are not at the spindle poles but remain at their interphase position. The interzonal spindle collapses early at telophase, and shortly thereafter cleavage microtubules appear. These microtubules extend from the region of the basal bodies to the posterior of the cell. The events of cell division are compared with these events in other green algae and in Ochromonas. The functional and phylogenetic significance of the observations is discussed.     

Toxicity of secondary compounds to the seed-eating larvae of the bruchid beetle Callosobruchus maculatus

By incorporating various secondary compounds in the normal diet of larval Callosobruchus maculatus bruchids, we show that the effects of any particular compound are dosage-dependent. Alkaloids are generally the most toxic of the compounds tested. Non-protein amino acids are more toxic than protein amino acids but the latter can be toxic at 1 and 5% incorporation in the diet. The non-protein amino acid homoarginine has a salutary effect on larval survival at low concentrations. A variety of other secondary compounds found in seeds are toxic at various levels representative of those levels found in seeds in nature, and for all secondary compounds tested a 0.1–5% incorporation in the diet often has a detrimental effect on production of adult beetles. We conclude that many of the secondary compounds found in seeds are likely to be toxic to at least some animal, and thus are likely to be responsible at least in part for the extreme host-specifity shown by seed-eating insects.     

Thermolabile H-2Kb molecules expressed by transporter associated with antigen processing-deficient RMA-S cells are occupied by low-affinity peptides.

RMA-S cells do not express functional TAP, yet they express MHC class I molecules at the cell surface, especially at reduced temperatures (26 degrees C). It is generally assumed that such class I molecules are "empty," devoid of any associated peptide. A radiochemical approach was used to label class I-associated peptides and to determine the extent to which Kb molecules in RMA-S cells are associated with peptides. These studies revealed that at 26 degrees C Kb molecules in RMA-S cells are occupied with self-peptides. Such peptides stably associate with Kb at 26 degrees C but easily dissociate from them at 37 degrees C, suggesting low-affinity interactions between Kb and the associated peptides. At 26 degrees C, at least some of these Kb molecules are stably expressed in a peptide-receptive state on the cell surface, whereas at 37 degrees C they are short lived and are only transiently capable of binding and presenting exogenously supplied OVA 257-264 peptide for presentation to CD8+ Kb-restricted T lymphocytes. Thus contrary to current models of class I assembly in TAP-deficient RMA-S cells, the presumably "empty" molecules are in fact associated with peptides at 26 degrees C. Together, our data support the existence of an alternative mechanism of peptide binding and display by MHC class I molecules in TAP-deficient cells that could explain their ability to present Ag.     

Surgical anatomy of the anterior abdominal wall in normal viscera, dolichoviscerosis and visceroptosis

There are three types in position of the abdominal internal organs: visceronorm, dolichoviscerosis and visceroptosis. The anterior abdominal wall also has its own anatomical peculiarities at every type of the internal organs position. Anatomical differences of its structure at visceronorm and dolichoviscerosis in comparison with visceroptosis are characterized as following: the area of aponeurotic formations of the anterior abdominal wall at dolichoviscerosis and visceroptosis increases and that of the muscular-decreases. Umbilical and inguinal rings are essentially dilated in comparison with those at visceronorm. It means that at dolichoviscerosis and visceroptosis there are anatomical prerequisites for development of external hernias in the anterior abdominal wall. A considerable mobility of the intestinal tract loops at dolichoviscerosis and visceroptosis results in certain disturbances of its function and their outlet into hernial sacs.     

An Aceto-Osmium Method for Demonstrating Nematodes in Citrus Roots

Difficulties are encountered in observing nematodes in citrus feeder roots because of the presence of suberin and other unsaturated compounds. To obviate these difficulties, infected citrus roots, either fresh or preserved, are immersed in a covered jar for 2 hr at 52° C in a solution composed of distilled water, 16 parts; 10% acetic acid, 10 parts; and 2% aqueous osmium tetroxide, 2 parts. The stained, blackened roots are washed in running water for at least 1 hr and then bleached in 10-30% hydrogen peroxide at 32°C for a few seconds until the color of the roots lightens perceptibly. After several washings in water to stop the oxidation reaction, roots are dehydrated in 70, 95, and absolute ethanol held at 52 °C for 30 min at each concentration. After dehydration, roots are cleared in methyl salicylate at 52°C. Examination for nematodes in most cases, can be made after 30 min.     

海南产螺旋藻粉蛋白质氨基酸

采用Tecator自动定氮仪和Waters PICO-TAG氨基酸自动分析仪测定了海南螺旋藻粉中蛋白质含量和17种氨基酸含量。结果显示海南螺旋藻粉中蛋白质含量达63.3%,总氨基酸含量达60.88%,其中必需氨基酸含量超过40%,比例平衡,符合FA0标准,可与国外产品媲美。     

Methionyl-tRNA synthetase induced 3'-terminal and delocalized conformational transition in tRNAfMet: steady-state fluorescence of tRNA with a single fluorophore

Five species of tRNAfMet labeled with a single fluorophore are prepared to analyze the conformational changes at the 3'-end, at dihydrouridine, and at thiouridine in tRNAfMet upon binding of methionyl-tRNA synthetase. The emission and excitation spectra, anisotropy, and solvent accessibility of the fluorophore in each of the modified tRNAfMet's are determined in the absence and presence of methionyl-tRNA synthetase. The results are consistent with the following. The probes at the 3'-end are in a nonpolar environment, mobile relative to the tRNA molecule, and fully exposed to the solvent. The probes at dihydrouridine are partially stacked over the neighboring bases, nearly immobile, and relatively inaccessible. The S8-C13 cross-linked product is rigid. Upon binding of methionyl-tRNA synthetase, the probes at the 3'-terminus become localized in a less polar environment, highly immobilized, and effectively shielded against solvent access, while the probes at dihydrouridine appear to be partially unstacked from the neighboring base and become slightly more accessible for solvent. Singlet-singlet energy transfer between the intrinsic protein fluorescence and the fluorophores in modified tRNA's was observed by sensitized emission for tRNAfMet modified at the 3'-end and for S8-C13 but not for tRNAfMet's modified at dihydrouridine. These results suggest that dihydrouridine in tRNAfMet is oriented away from methionyl-tRNA synthetase in the tRNA-enzyme complex.     

Entropy flow in cyclic biological processes

Biological processes are quantized, molecular, and often cyclical. Taken altogether, they comprise a heat engine working between an upper thermal reservoir at 6000 K and a lower thermal reservoir at 300 K. For optimum efficiency, such a heat engine would give out as much entropy at 300 K as it takes in at 6000 K. Yet the individual processes comprising this heat engine are quantized and molecular. What does entropy mean for them? Can we trace the entropy flow in the separate molecular cycles that are all we have when we look carefully at the overall heat engine? I think we can, and in doing so will learn why so many biological units are 5–10 μm in size.     

Long-time molecular dynamics simulations of botulinum biotoxin type-A at different pH values and temperatures

Botulinum neurotoxins type A (BoNT/A) are highly potent toxins, but are also useful in the treatment of illnesses. We studied the properties of BoNT/A at various temperatures and pH values in order to understand its toxicity and structure variations. The pH values of the environment of BoNT/A are obtained by changing the protonation states of certain titratable residue groups. Our results show that certain parts of the protein are active at acidic pH environments or at high temperatures. The protein is more stable in neutral environments at normal human body temperature, whereas, at high temperature, the protein is more stable in acidic environments. Also, the three domains of the protein tend to have relative motion rather than within individual domains.     

Inactivation of a low temperature-induced RNA helicase in Synechocystis sp. PCC 6803: physiological and morphological consequences

Inactivation of the DEAD box RNA helicase, crhR, has dramatic effects on the physiology and morphology of the photosynthetic cyanobacterium, Synechocystis sp. PCC 6803. These effects are observed at both normal growth temperature (30°C) and under cold stress (20°C), indicating that CrhR performs crucial function(s) at all temperatures. A major physiological effect is the rapid cessation of photosynthesis upon temperature downshift from 30 to 20°C. This defect does not originate from an inability to transport or accumulate inorganic carbon or a deficiency in photosynthetic capacity as the mutant has sufficient electron transport and enzymatic capacity to sustain photosynthesis at 30°C and inorganic carbon (Ci) accumulation at 20°C. Oxygen consumption in the presence of methyl viologen indicated that while electron transport capacity is sufficient to accumulate Ci, the mutant does not possess sufficient activity to sustain carbon fixation at maximal rates. These defects are correlated with severely impaired cell growth and decreased viability, cell size and DNA content at low temperature. The ΔcrhR mutant also progressively accumulates structural abnormalities at low temperature that cannot be attributed solely to reactive oxygen species (ROS)-induced photooxidative damage, suggesting that they are manifestations of pre-existing defects that are amplified over time. The data indicate that the observed physiological and morphological effects are intimately related to crhR mutation, implying that the lack of CrhR RNA unwinding/annealing activity results in the inability to execute one or more vital steps in photosynthesis that are required at all temperatures but are crucial at low temperature.     

Dynamics of lysozyme structure network: probing the process of unfolding

Recently we showed that the three-dimensional structure of proteins can be investigated from a network perspective, where the amino acid residues represent the nodes in the network and the noncovalent interactions between them are considered for the edge formation. In this study, the dynamical behavior of such networks is examined by considering the example of T4 lysozyme. The equilibrium dynamics and the process of unfolding are followed by simulating the protein at 300 K and at higher temperatures (400 K and 500 K), respectively. The snapshots of the protein structure from the simulations are represented as protein structure networks in which the strength of the noncovalent interactions is considered an important criterion in the construction of edges. The profiles of the network parameters, such as the degree distribution and the size of the largest cluster (giant component), were examined as a function of interaction strength at different temperatures. Similar profiles are seen at all the temperatures. However, the critical strength of interaction (Icritical) and the size of the largest cluster at all interaction strengths shift to lower values at 500 K. Further, the folding/unfolding transition is correlated with contacts evaluated at Icritical and with the composition of the top large clusters obtained at interaction strengths greater than Icritical. Finally, the results are compared with experiments, and predictions are made about the residues, which are important for stability and folding. To summarize, the network analysis presented in this work provides insights into the details of the changes occurring in the protein tertiary structure at the level of amino acid side-chain interactions, in both the equilibrium and the unfolding simulations. The method can also be employed as a valuable tool in the analysis of molecular dynamics simulation data, since it captures the details at a global level, which may elude conventional pairwise interaction analysis.