Phycomyces: fine structure analysis of the growing zone

Fine structure analysis of the stage IVb Phycomyces sporangiophore growing zone (GZ) was performed during steady-state growth using a computer-video digitizer and recorder. By simultaneously measuring the trajectory of two independent particles above and within the GZ, we have confirmed the previous findings of R. Cohen and M. Delbrück (1958 J Cell Comp Physiol 52: 361-388) that the GZ is not uniform. We have been unable to confirm their findings that counterclockwise rotation exists in a mature sporangiophore. The rates of rotation and elongation change independently as a function of position in the GZ. This change is not linear as would be expected if the GZ were uniform. The importance of this finding is discussed in terms of the fibril reorientation model.     

Phycomyces: Mechanical Analysis of the Living Cell Wall

Stress relaxation measurements were conducted on stage IVb Phycomycessporangiophores in order to correlate the effect of imposedstress on cell wall growth. It was found that the cell wallshowed maximum growth when subjected to maximum stress. Growthunder stress decreased as the stress decreased. This techniquewas used to measure the response of the sporangiophore to alight stimulus; the response is measured directly from the stressrelaxation curve. Stress/strain measurements were also conducted on the stageIVb Phycomyces sporangiophores in order to further characterizethe mechanical properties of the growing zone. It was foundthat the stress/strain ratio was invariant to the strain ratewithin the ranges tested but the stress/strain ratio did increasewith larger loads, i.e., the stress/strain ratio shows non-linearbehaviour.     

Phycomyces: irregular growth patterns in stage IVb sporangiophores

Net rotation and net elongation of a stage IVb Phycomyces growing zone were simultaneously measured minute by minute with a photographic apparatus coupled with a rotating stage. A direct correlation between a growth response and a twist response after either a light stimulus or a house stimulus was found. There were significant irregularities in growth rate in both the elongation and rotation that were not a result of measurement error; these irregularities were poorly, if at all, correlated. We believe that these fluctuations reflect the underlying molecular mechanism of cell wall synthesis.     

Phycomyces: distribution of growth velocities in the growing zone

Distribution of growth velocities in the growing zone of stage IVb Phycomyces sporangiophores was measured by photographing the growing zone after dusting it with starch grains. When the entire growing zone is fully dark-adapted to red light and then subjected to a saturating white light stimulus, the entire growing zone increases in growth rate. When the growing zone is partially light-adapted, again the entire growing zone responds when subjected to a saturating white light stimulus but to a lesser degree than the fully dark-adapted sporangiophore. Phototropic mutants of class 1 and class 2 show a distribution of growth in the growing zone similar to wild type sporangiophores both during steady-state growth and during light-stimulated growth.     

Helical growth of stage-IVb sporangiophores of <Emphasis Type="Italic">Phycomyces blakesleeanus</Emphasis>: the relationship between rotation and elongation growth rates

An understanding of the relationship between the two components of helical growth (rotation rate and elongation rate) is fundamental to understanding the biophysical and molecular mechanism(s) of cell wall extension in algal cells, fungal cells, and plant stems and roots. Helical growth occurs throughout development of the sporangiophores of Phycomyces blakesleeanus. Previous studies within the growth zone of stage-IVb sporangiophores have reported conflicting conclusions. An implicit assumption in the previous studies [E.S. Castle (1937) J Cell Comp Physiol 9:477-489; R. Cohen and M. Delbruck (1958) J Cell Comp Physiol 52:361-388; J.K.E. Ortega et al. (1974) Plant Physiol 53:485-490] was that the relationship between rotation rate and elongation rate was independent of the magnitude of the elongation rate. In the present study, for stage-IVb sporangiophores growing at a steady rate, it is shown that the ratio of rotation rate and elongation rate decreases as the elongation rate increases. Previously proposed biophysical and molecular mechanisms cannot account for the observed behavior. The previously postulated fibril-reorientation mechanism [J.K.E. Ortega and R.I. Gamow (1974) J Theor Biol 47:317-332; J.K.E. Ortega et al. (1974) Plant Physiol 53:485-490] is modified to accommodate this new finding. Other experiments were conducted to determine how the ratio of rotation rate and elongation rate behaves during a pressure response (a transient decrease in elongation rate produced by a large step-up in turgor pressure using the pressure probe). Results of these experiments indicate that this ratio increases during the pressure response.     

The problem of handedness reversal during the spiral growth of Phycomyces

One may easily conclude that the mechanism of cell wall growth of the sporangiophore of Phycomyces is an extremely complex one since the sporangiophore not only grows vertically (stretches) but also rotates (twists) about its longitudinal axis during growth. The result is spiral growth. The spiraling changes direction during the sporangiophore's development going from an initial left-handed spiral to a right-handed one and finally returning to the left-handed form. We believe that these observations can be explained in the following way. The cell's turgor pressure causes both longitudinal and radial deformation in the soft, thin, plastic region of the growing cell wall thus causing the wall to stretch. The cell wall microfibrils, which are initially oriented in a near transverse direction in the upper region of the growing zone, are displaced toward the longitudinal axis as a result of vertical stretch. This fibril displacement, from a transverse to a longitudinal direction, causes a horizontal displacement of the cell wall. This horizontal displacement is coupled with the vertical stretch to generate a spiral effect, i.e. spiral growth. We are further proposing that interfibril slippage occurs as the cell wall softens between stages IVa and IVb and it is this slippage that accounts for the change in the direction of spiraling when the sporangiophore goes from the left-handed form to the right-handed one.     

Branching in Amyloid Fibril Growth

Using the peptide hormone glucagon and Aβ(1-40) as model systems, we have sought to elucidate the mechanisms by which fibrils grow and multiply. We here present real-time observations of growing fibrils at a single-fibril level. Growing from preformed seeds, glucagon fibrils were able to generate new fibril ends by continuously branching into new fibrils. To our knowledge, this is the first time amyloid fibril branching has been observed in real-time. Glucagon fibrils formed by branching always grew in the forward direction of the parent fibril with a preferred angle of 35-40°. Furthermore, branching never occurred at the tip of the parent fibril. In contrast, in a previous study by some of us, Aβ(1-40) fibrils grew exclusively by elongation of preformed seeds. Fibrillation kinetics in bulk solution were characterized by light scattering. A growth process with branching, or other processes that generate new ends from existing fibrils, should theoretically give rise to different fibrillation kinetics than growth without such a process. We show that the effect of adding seeds should be particularly different in the two cases. Our light-scattering data on glucagon and Aβ(1-40) confirm this theoretical prediction, demonstrating the central role of fibril-dependent nucleation in amyloid fibril growth     

Intracellular rotation and the phototropic response of Phycomyces.

Experimental evidence indicates that during phototropism, Phycomyces sporangiophores use their own net rotation to convert an apparently spatial stimulus to a temporal one. Conversion to a continuous temporal stimulus insures that phototropism never adapts as long as the spatial asymmetry in illumination is maintained. If this temporal stimulus is circumvented by rotating the cell backwards so that there is no net rotation of some of the receptors relative to the light, the response can be reduced by two-thirds. The system thus adapts to the incident light, resulting in a reduced response. For the illumination of a transparent cell, this compensating rotation speed is 10 degrees/min counterclockwise and probably corresponds to the photoreceptor rotation in the most effective part of the growing zone. We infer that this region is in the upper portion of the growing zone and that the receptor system rotates integrally with that region of the cell.     

Template-assisted lateral growth of amyloid-β42 fibrils studied by differential labeling with gold nanoparticles

Amyloid-β protein (Aβ) aggregation into amyloid fibrils is central to the origin and development of Alzheimer's disease (AD), yet this highly complex process is poorly understood at the molecular level. Extensive studies have shown that Aβ fibril growth occurs through fibril elongation, whereby soluble molecules add to the fibril ends. Nevertheless, fibril morphology strongly depends on aggregation conditions. For example, at high ionic strength, Aβ fibrils laterally associate into bundles. To further study the mechanisms leading to fibril growth, we developed a single-fibril growth assay based on differential labeling of two Aβ42 variants with gold nanoparticles. We used this assay to study Aβ42 fibril growth under different conditions and observed that bundle formation is preceded by lateral interaction of soluble Aβ42 molecules with pre-existing fibrils. Based on this data, we propose template-assisted lateral fibril growth as an additional mechanism to elongation for Aβ42 fibril growth.     

Asymmetric amyloid fibril elongation: a new perspective on a symmetric world

Amyloids are insoluble, fibrous proteins formed through the aggregation of misfolded proteins. They accumulate in the tissue of individuals with degenerative diseases, such as Parkinson's and Alzheimer's. The purpose of this study was to determine whether fibril growth from an initial model fibril seed is unidirectional or bidirectional. The prevailing theory on amyloid formation is that a symmetric fibril elongates equally from both ends. This study provides evidence to the contrary; the process occurs predominately unidirectionally, demonstrating that amyloid fibrils may be asymmetric and propagate mostly in one direction. Alexa Fluor 568 labeled insulin fibrils were seeded into a native insulin solution and allowed to elongate at 65°C while the kinetics of fibril growth was monitored. The resulting elongated fibrils were labeled with thioflavin-T, and the fluorescent images of the fibrils show that a majority of the elongated fibrils propagated along only one end of the seed, with the remaining labeled fibrils having bidirectional elongation or no elongation. Using a crystallographic model, we offer a structural explanation for asymmetric growth of the insulin fibrils. Thus, instead of the current view that fibrils grow symmetrically from both ends of the fibril, this is the first evidence that insulin amyloid fibrils formed in solution are asymmetric and appear to grow from only one end.     

Phycomyces: Control of transpiration and the anemotropic reversal

Transpiration rates of single sporangiophores of the fungusPhycomyces blakesleeanus were measured with a microbalance. Sporangiophores transpired at the same rate at both high and low humidities. The transpiration rate was independent of sporangiophore length in the major growth stage, IVb. This finding is consistent with transpiration occurring only in the growing zone, where the cuticular layer is less developed. Sporangiophores in a wind tunnel, which were bending into the applied wind, showed a temporary reversal in their direction of bending in response to a humidity decrease. These results further confirm that water plays a role in the anemotropic and avoidance responses.     

Control of collagen fibril diameters in tissues.

It is proposed that radial growth of collagen fibrils, which takes place in all connective tissues to varying extents, according to the tensile stresses exerted on them, proceeds mainly by aggregation of protofibrils (approximately 10 nm) and existing fibrils. In young tissues, fibrils are prevented from making frequent intimate contacts which would lead to aggregation by abundant interfibrillar proteoglycan, that keeps the fibrils apart. Collagen fibrils are probably unable to fuse except when the molecules within them are packed in the same sense, i.e. fusing fibrils are parallel. The roughly equal numbers of parallel and antiparallel fibrils seen in several tissues must limit radial fibril growth in older tissues, where proteoglycan is usually less abundant. Possible origins of the balance of fibril polarities, which must be conserved after fibril nucleation on cell or non-cell templates, are analysed. The two controlling factors, ambient proteoglycan and fibril polarity, working against the tendency of fibrils to fuse, account for many features of the observed distributions of collagen fibril diameters in diverse tissues and at different ages.     

A comparison of cell-wall-yielding properties for two developmental stages of Phycomyces sporangiophores

The yielding properties of the cell wall, irreversible wall extensibility (m) and yield threshold (Y), are determined for stage I sporangiophores of Phycomyces blakesleeanus from in-vivo creep experiments, and compared to the values of m and Y previously determined for stage IVb sporangiophores using the same pressureprobe method (Ortega et al., 1989, Biophys. J. 56, 465). In either stage the sporangiophore enlarges (grows) predominately in length, in a specific region termed the growing zone, but the growth rates of stage I (5–20 urn · min^–1) are smaller than those of stage IVb (30–70 m · min^–1). The results demonstrate that this difference in growth rate is the consequence of a smaller magnitude of m for stage I sporangiophores; the obtained values of P (turgor pressure), Y, and P-Y (effective turgor for irreversible wall extension) for stage I sporangiophores are slightly larger than those of stage IVb sporangiophores. Also, it is shown that the magnitude of m for the stage I sporangiophore is regulated by altering the length of the growing zone, L_g. A relationship between m and L_g is obtained which can account for the difference between values of m determined for stage I and stage IVb sporangiophores. Finally, it is shown that similar changes in the magnitude of m and (which have been used interchangeably in the literature as a measure of irreversible wall extensibility) may not always represent the same changes in the cell-wall properties.Abbreviations and Symbols L length - L_g length of growing zone - m irreversible wall extensibility - P turgor pressure - Y yield threshold - (P-Y) effective turgor for irreversible wall extension - relative irreversible wall extensibility - _g relative irreversible wall extensibility of the growing zone (m/L_g) This work was supported by National Science Foundation grant DCB-8801717 to J.K.E. Ortega.     

Diameter and amount of β-carotene determine the maximal phototropic bending angle ofPhycomyces sporangiophores

Wild-type sporangiophores at stage IVb (final developmental stage after sporangium formation) ofPhycomyces show a pronounced positive phototropism to unilateral white light. We found that the maximal bending angle was larger in thin sporangiophores than in thick ones, and larger in the sporangiophores containing a small amount of β-carotene than in those containing a large amount of it. These phenomena probably occur because of the increase in length of intracellular light path or in the intracellular light-attenuation coefficient, as supported theoretically.     

Binding of the Molecular Chaperone ��B-Crystallin to A�� Amyloid Fibrils Inhibits Fibril Elongation

The molecular chaperone αB-crystallin is a small heat-shock protein that is upregulated in response to a multitude of stress stimuli, and is found colocalized with Aβ amyloid fibrils in the extracellular plaques that are characteristic of Alzheimer''s disease. We investigated whether this archetypical small heat-shock protein has the ability to interact with Aβ fibrils in vitro. We find that αB-crystallin binds to wild-type Aβ₄₂ fibrils with micromolar affinity, and also binds to fibrils formed from the E22G Arctic mutation of Aβ₄₂. Immunoelectron microscopy confirms that binding occurs along the entire length and ends of the fibrils. Investigations into the effect of αB-crystallin on the seeded growth of Aβ fibrils, both in solution and on the surface of a quartz crystal microbalance biosensor, reveal that the binding of αB-crystallin to seed fibrils strongly inhibits their elongation. Because the lag phase in sigmoidal fibril assembly kinetics is dominated by elongation and fragmentation rates, the chaperone mechanism identified here represents a highly effective means to inhibit fibril proliferation. Together with previous observations of αB-crystallin interaction with α-synuclein and insulin fibrils, the results suggest that this mechanism is a generic means of providing molecular chaperone protection against amyloid fibril formation.     

Amyloid-Like Fibril Elongation Follows Michaelis-Menten Kinetics

A number of proteins can aggregate into amyloid-like fibrils. It was noted that fibril elongation has similarities to an enzymatic reaction, where monomers or oligomers would play a role of substrate and nuclei/fibrils would play a role of enzyme. The question is how similar these processes really are. We obtained experimental data on insulin amyloid-like fibril elongation at the conditions where other processes which may impact kinetics of fibril formation are minor and fitted it using Michaelis-Menten equation. The correlation of the fit is very good and repeatable. It speaks in favour of enzyme-like model of fibril elongation. In addition, obtained and values at different conditions may help in better understanding influence of environmental factors on the process of fibril elongation.     

Phospholipids Enhance Nucleation but Not Elongation of Apolipoprotein C-II Amyloid Fibrils

Amyloid fibrils and their oligomeric intermediates accumulate in several age-related diseases where their presence is considered to play an active role in disease progression. A common characteristic of amyloid fibril formation is an initial lag phase indicative of a nucleation-elongation mechanism for fibril assembly. We have investigated fibril formation by human apolipoprotein (apo) C-II. ApoC-II readily forms amyloid fibrils in a lipid-dependent manner via an initial nucleation step followed by fibril elongation, breaking, and joining. We used fluorescence techniques and stopped-flow analysis to identify the individual kinetic steps involved in the activation of apoC-II fibril formation by the short-chain phospholipid dihexanoyl phosphatidylcholine (DHPC). Submicellar DHPC activates fibril formation by promoting the rapid formation of a tetrameric species followed by a slow isomerisation that precedes monomer addition and fibril growth. Global fitting of the concentration dependence of apoC-II fibril formation showed that DHPC increased the overall tetramerisation constant from 7.5 × 10^− 13 to 1.2 × 10^− 6 μM^− 3 without significantly affecting the rate of fibril elongation, breaking, or joining. Studies on the effect of DHPC on the free pool of apoC-II monomer and on fibril formation by cross-linked apoC-II dimers further demonstrate that DHPC affects nucleation but not elongation. These studies demonstrate the capacity of small lipid compounds to selectively target individual steps in the amyloid fibril forming pathway.     

Molecular Dynamics Simulations of Anti-Aggregation Effect of Ibuprofen

Using implicit solvent molecular dynamics and replica exchange simulations, we study the impact of ibuprofen on the growth of wild-type Aβ fibrils. We show that binding of ibuprofen to Aβ destabilizes the interactions between incoming peptides and the fibril. As a result, ibuprofen interference modifies the free energy landscape of fibril growth and reduces the free energy gain of Aβ peptide binding to the fibril by ≃2.5 RT at 360 K. Furthermore, ibuprofen interactions shift the thermodynamic equilibrium from fibril-like locked states to disordered docked states. Ibuprofen''s anti-aggregation effect is explained by its competition with incoming Aβ peptides for the same binding site located on the fibril edge. Although ibuprofen impedes fibril growth, it does not significantly change the mechanism of fibril elongation or the structure of Aβ peptides bound to the fibril.     

Pre-Steady-State Kinetic Analysis of the Elongation of Amyloid Fibrils of β2-Microglobulin with Tryptophan Mutagenesis

Amyloid fibrils elongate seed dependently, with preformed fibrils providing a template for propagation of amyloidogenic conformation. Most seeding experiments use relatively few seed fibrils in comparison with monomers, resembling steady-state enzyme kinetics. Pre-steady-state kinetics should also be useful for characterizing the elongation process. With β₂-microglobulin (β₂-m), a protein responsible for dialysis-related amyloidosis, we measured the pre-steady-state kinetics of fibril elongation at pH 2.5, conditions under which the monomer is largely unfolded. β₂-m has Trp residues at positions 60 and 95. We used three single Trp mutants and fluorescence spectroscopy to study structural change upon fibril elongation. To focus on conformational change in monomers, we prepared seeds with a mutant without a Trp residue. At a fixed concentration of monomeric β₂-m, the apparent rate of fibril elongation increased with an increase in the concentration of seeds and then saturated, suggesting the accumulation of a rate-limiting intermediate. Importantly, saturation occurred at a seed/monomer ratio of around 10, as expressed by the concentration of the monomer. Because the number of monomers constituting the seed fibrils is much larger than 10, the results suggest that the elongation process is limited by “non-active-site binding.” Spectral analysis indicated that, upon this non-active-site binding, both Trp60 and Trp95 are exposed to the solvent, and then only Trp60 is buried upon transition to the fibrils. We propose a new model of fibril elongation in which non-active-site binding plays a major role.