Signalling: basics and evolution

Signalling concerns the transfer of information from one body, a source, to another, a receiver in order to stimulate activity. The problem arises with the word information. It is defined as what is transferred in a sequence of things, say between people, e.g. words or signs. The idea of signalling between people is then obvious but it is not clear in cell biology. Information transfer, signalling, is required for the organisation of all cellular activity but we must ask what is transferred and how is it transmitted and received? Sometimes it is assumed that all information, i.e. organisation in a cell, is represented in the DNA sequence. This is incorrect. We shall show that the environment is a second source of information concerning material and energy. The receiving party from both DNA and the environment is general metabolism. The metabolism then signals back and sends information to both DNA and uptake from the environment. Even then energy is needed with machinery to send out all signals. This paper examines the way signalling evolved from prokaryotes through to man. In this process the environmental information received increased to the extent that finally the brain is a phenotypic as much as a genotypic organ within a whole organism. By phenotypic we mean it is organised by and interactive with information from the environment.     

Understanding foraging behaviour in spatially heterogeneous environments

The role of stochasticity and spatial heterogeneity in foraging systems is investigated. We formulate a spatially explicit model which describes the behaviour of grazing animals in response to local information using simple stochastic rules. In particular the model reflects the biology in that decisions to move to a new location are based on visual assessment of the sward height in a surrounding neighbourhood, whilst the decision to graze the current location is based on the residual sward height and olfactory assessment of local faecal contamination. It is assumed that animals do not interact directly, but do so through modification of, and response to a common environment. Spatial heterogeneity is shown to have significant effects including reducing the equilibrium intake rate and increasing the optimal stocking density, and must therefore be taken into account by resource managers. We demonstrate the relationship between the stochastic spatial model and its non-spatial deterministic counterpart, and in the process derive a moment-closure approximation to the full process, which can be regarded as an intermediate, or pseudo-spatial model. The role of spatial heterogeneity is emphasized, and better understood by comparing the results obtained from each approach. The relative efficiency of random and directed searching behaviour in spatially heterogeneous environments is explored for both clean and contaminated pastures, and the impact of faecal avoidance behaviour assessed.     

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments

Extreme conditions in subsurface are suspected to be responsible for morphological convergences, and so to bias biodiversity assessment. Subterranean organisms are also considered as having poor dispersal abilities that in turn generate a large number of endemic species when habitat is fragmented. Here we test these general hypotheses using the subterranean amphipod Niphargus virei. All our phylogenetic analyses (Bayesian, maximum likelihood and distance), based on two independent genes (28S and COI), revealed the same tripartite structure. N. virei populations from Benelux, Jura region and the rest of France appeared as independent evolutionary units. Molecular rates estimated via global or Bayesian relaxed clock suggest that this split is at least 13 million years old and accredit the cryptic diversity hypothesis. Moreover, the geographical distribution of these lineages showed some evidence of recent dispersal through apparent vicariant barrier. In consequence, we argue that future analyses of evolution and biogeography in subsurface, or more generally in extreme environments, should consider dispersal ability as an evolving trait and morphology as a potentially biased marker.     

Experimental studies of foraging in complex laboratory environments

The value of examining hummingbird foraging behavior in complexlaboratory environments is discussed relative to decision theoryand experimental components analysis, and an experimental systemis described. The system provides control of metabolic, behavioral,and environmental variables, and allows automatic recordingand efficient analysis of behavior. Specific research applicationsof the system are discussed, including studies of adjustmentof food intake to changes in food concentration, discriminationand choice among food sources, and spatial memory organization.     

Extractive foraging and the evolution of primate intelligence

One of the two major theories regarding the evolution of intelligence in primates is that feeding strategies determine mental development. Evidence for this theory is reviewed and related to extractive foraging, which is the act of locating and/or processing embedded foods such as underground roots and insects or hard-shelled nuts and fruits. It is shown that, although only cebus monkeys and chimpanzees in the wild use tools in extractive foraging, many other species of mammals (including primates) and birds are capable of extracting embedded foods without tools. Extractive foraging by primates is compared to extractive foraging by other mammals and birds to assess whether: 1) extractive foraging involves cognition, and 2) extractive foraging by primates is unique in a way that may mean it played a role in the development of intelligence among primates. This comparison reveals that some acts of extractive foraging by nonprimates are equally sophisticated as those of primates. It is suggested that extractive foraging played no significant role in the evolution of primate intelligence. Hypotheses for testing precise differences in extractive foraging ability across taxa are offered, and the roles of olfactory cues, manual dexterity, and strength in extractive foraging are evaluated. In conclusion, the hominization process is briefly reviewed in relation to foraging behavior. A ?package? of traits that, in combination, is unique to hominids is discussed: tool-aided extractive foraging, division of labor by sex with food exchange, and feeding of juveniles.     

Promiscuity and the evolution of cooperative breeding

Empirical data suggest that low levels of promiscuity have played a key role in the evolution of cooperative breeding and eusociality. However, from a theoretical perspective, low levels of promiscuity can favour dispersal away from the natal patch, and have been argued to select against cooperation in a way that cannot be explained by inclusive fitness theory. Here, we use an inclusive fitness approach to model selection to stay and help in a simple patch-structured population, with strict density dependence, where helping increases the survival of the breeder on the patch. Our model predicts that the level of promiscuity has either no influence or a slightly positive influence on selection for helping. This prediction is driven by the fact that, in our model, staying to help leads to increased competition between relatives for the breeding position-when promiscuity is low (and relatedness is high), the best way to aid relatives is by dispersing to avoid competing with them. Furthermore, we found the same results with an individual-based simulation, showing that this is not an area where inclusive fitness theory 'gets it wrong'. We suggest that our predicted influence of promiscuity is sensitive to biological assumptions, and that if a possibly more biologically relevant scenario were examined, where helping provided fecundity benefits and there was not strict density dependence, then low levels of promiscuity would favour helping, as has been observed empirically.     

Vibrational communication facilitates cooperative foraging in a phloem-feeding insect

Insects are the dominant herbivores in tropical forests, with a range of mechanisms for exploiting plant resources. For group-living species, such mechanisms may involve communication. The Neotropical treehopper Calloconophora pinguis (Hemiptera: Membracidae) is a sap-feeding species in which groups of siblings feed on new leaves during the brief period of leaf expansion. Using an experimental approach, a process of cooperative foraging among siblings was documented, in which a few individuals in a group behave as scouts, locating a new feeding site and advertising it using plant-borne vibrational signals. Signalling leads to a period of positive feedback in which newly recruited individuals signal in concert with those already there. The food signalling system of C. pinguis is unique in its use of synchronized group displays and in the tight coordination of receiver responses with collective signals. Examples from a number of taxonomic groups show that vibrational communication can allow group-living insects to solve the challenges of feeding on plants, such as remaining in a foraging group or avoiding predation. While most research has focused on leaf-feeding species, sap-feeding species may remove just as much biomass. This study shows that cooperative vibrational communication underlies the ability of a sap-feeding species to exploit plant resources during a narrow window of availability.     

The evolution of the cooperative group

Summary A simple model, illustrating the transition from a population of free swimming, solitary cells (Chlamydomonas-type) to one consisting of small colonies (Gonium-type) serves as a basis to discuss the evolution of the cooperative group. The transition is the result of a mutation of the dynamics of cell division, delayed cell separation leads to colonies of four cells. With this mutation cooperative features appear, such as synchronised cell divisions within colonies and coordinated flagellar function which enables the colony to swim in definite directions. The selective advantages under given, environmental conditions are defined and the periods necessary for complete allelic replacement in small populations are calculated for asexual and sexual reproduction. The assumption of a steady-state population during allelic substitution is critically considered, particularly under conditions of competition. It is shown that density-dependent population control must operate in the process of selection. Sexual reproduction slows down the rate of selection even though all cells dre haploid. This phenomenon can be explained in general terms of `organizational dominance', where individual units coordinate the function of their neighbours which may be of a different allelotype.Cooperativity is pointed out as an a priori systemic feature which resides in the sub-units of systems, group formation and coordination appears thus as an almost inevitable event. A particular type of system described as closed cycle of positive fitness interaction is discussed in more detail. It has the remarkable feature that its members cannot compete with each other; selection takes place between whole cycles (in analogy to Eigen's 1971 model).Gonium has a wide spectrum of `somatic plasticity' which enables it to assume various colonial configurations depending on physiological and environmental conditions. This feature can be explained as the result of dynamic flexibilities on the macro-molecular level. The particular relationship between the vast, molecular complexity and the relative simple dynamics of the cell cycle must lead eventually to the genetic fixation of an environmentally induced phenotype.     

Human evolution and human-influenced evolution of organisms in changing environments

Human evolution and human-influenced evolution of living organisms such as animals,plants,and microorganisms on our planet are among the most active and inspiring topics of scientific research.This is because the evolutionary processes influenced by humans can be detected within a quantifiable period of time,and the consequences of such evolutionary processes vary significantly in terms of their rates and diversification,compared to those under the conditions of no human influences (Hendry et al.,2008).For example,domesticated animals (e.g.,chicken and pig)and plant species (e.g.,rice and maize) have evolved relatively rapidly within the past 10 000 years,which has resulted in tremendous genetic diversity of these domesticates under human influences in different environments (Dorshorst et al.,2011;Huang et al.,2012;Rubin et al.,2012).However,the rapid evolution and changes in these organisms have had significant impacts on the environments that humans and these organisms inhabit.     

Two-level evolution of foraging agent communities

This paper presents simulation results of artificial foraging agent communities. The goal of each agent in the community is to find food. Once a food source is found, agents eat portions of it and carry some other portions to the nest (in a manner similar to ants) until the food is depleted. Agents may also communicate food positions when they are near each other. They are given a set of genes that control several characteristics, such as their activity, memory, scepticism, lying, etc. These genes are recombined and propagated by means of sexual reproduction. When one nest is superpopulated with agents, it can break in two nests. Agents can communicate only with those belonging to the same nest, which gives rise to emergent situations of competition and cooperation between the agents in the same nest, as well as competition between different nests. Other emergent phenomena such as the propagation of rumours are also studied.     

Environmental stability and the evolution of cooperative breeding in hornbills

Reproductive cooperation in social animals has been the focus of intensive research, yet the role of environmental factors in promoting such cooperation remains uncertain. A recent global analysis suggested that cooperative breeding in birds is a ‘bet-hedging’ strategy associated with climatic uncertainty, but it is unclear whether this mechanism applies generally or is restricted to the insectivorous passerines that predominate as cooperative breeders at the global scale. Here, we use a phylogenetic framework to assess the effect of climate on the evolution of cooperation in hornbills (Bucerotidae), an avian family characterized by frugivory and carnivory. We show that, in contrast to the global pattern, cooperative reproduction is positively associated with both inter- and intra-annual climatic stability. This reversed relationship implies that hornbills are relatively insensitive to climatic fluctuations, perhaps because of their dietary niche or increased body mass, both of which may remove the need for bet-hedging. We conclude that the relationship between climatic variability and cooperative breeding is inconsistent across taxa, and potentially mediated by life-history variation. These findings help to explain the mixed results of previous studies and highlight the likely shortcomings of global datasets inherently biased towards particular categories.     

Life histories and the evolution of cooperative breeding in mammals

While the evolution of cooperative breeding systems (where non-breeding helpers participate in rearing young produced by dominant females) has been restricted to lineages with socially monogamous mating systems where coefficients of relatedness between group members are usually high, not all monogamous lineages have produced species with cooperative breeding systems, suggesting that other factors constrain the evolution of cooperative breeding. Previous studies have suggested that life-history parameters, including longevity, may constrain the evolution of cooperative breeding. Here, we show that transitions to cooperative breeding across the mammalian phylogeny have been restricted to lineages where females produce multiple offspring per birth. We find no support for effects of longevity or of other life-history parameters. We suggest that the evolution of cooperative breeding has been restricted to monogamous lineages where helpers have the potential to increase the reproductive output of breeders.     

Temporal variation and the evolution of a parasitoid foraging cue

This work details theory in which selection favors generalists in a more variable environment. Specifically, in a two-host-one-parasitoid model, temporal variation in host abundances alters the optimal searching strategy and leads to the evolution of more generalist parasitoid strategies. Consistent with empirical observations, parasitoids learn host/plant odors, and use them as a cue to search for oviposition sites. The amount of unsuccessful search time required before a parasitoid alters its searching cues (the "giving-up time") is modeled in order to understand the evolutionarily optimal giving-up times under a variety of conditions. When host abundances vary across time, a generalist parasitoid strategy evolves with short giving-up times as it is likely that the host initially favored by a parasitoid will now have a low abundance. In contrast, when populations reach stable dynamics across time, giving-up times typically evolve to longer times, i.e. parasitoids remain specialized longer. The effect of temporal fluctuations is consistent across variation caused by endogenous population interactions and, to some degree, by environmental stochasticity. The conclusions are robust in that there is a strong degree of concordance between the results of a stochastic, individual-based model and a deterministic, numerical model. As an extension, spatial variation in hosts that leads to unequal tradeoffs between generalist parasitoids and specialist parasitoids may also result in the evolution of reduced giving-up times.     

Dimorphic foraging behaviors and the evolution of hominid hunting.

In contemporary foraging societies men typically hunt more than women. This observation has played an important role in many reconstructions of hominid evolution. The gender difference in human hunting, likely a product of both ecological and cultural factors, is mirrored by a similar sex difference among nonhuman primates. Existing explanations of such primate behavioral dimorphism are augmented by the recognition of an additional factor that may contribute to differences between males and females in the value of meat. Episodic female immunosuppression is a normal part of reproduction. Because meat is a source of pathogens, females can be expected to exhibit less constant attraction to meat. Sexual dimorphism in the attraction to meat may then contribute to dimorphic foraging specializations, a divergence that is likely augmented by the differential value of insectivory across the sexes. With the rise of cultural transmission of foraging knowledge, dimorphic foraging behaviors would have been reinforced, creating a more comprehensive gender-based division of labor.     

Modelling foraging ants in a dynamic and confined environment

In social insects, the superposition of simple individual behavioral rules leads to the emergence of complex collective patterns and helps solve difficult problems inherent to surviving in hostile habitats. Modelling ant colony foraging reveals strategies arising from the insects’ self-organization and helps develop of new computational strategies in order to solve complex problems. This paper presents advances in modelling ants’ behavior when foraging in a confined and dynamic environment, based on experiments with the Argentine ant Linepithema humile in a relatively complex artificial network. We propose a model which overcomes the problem of stagnation observed in earlier models by taking into account additional biological aspects, by using non-linear functions for the deposit, perception and evaporation of pheromone, and by introducing new mechanisms to represent randomness and the exploratory behavior of the ants.     

Optimal mutation rates in dynamic environments

In this paper, we study the evolution of the mutation rate for simple organisms in dynamic environments. A model based on explicit population dynamics at the gene sequence level, with multiple fitness coding loci tracking a moving fitness peak in a random fitness background, is developed and an analytical expression for the optimal mutation rate is derived. The optimal mutation rate per genome is approximately independent of genome length, something that has been observed in nature. Furthermore, the optimal mutation rate is a function of the absolute, not relative, replication rate of the superior gene sequences. Simulations confirm the theoretical predictions.     

Correlated evolution of thermal characteristics and foraging strategy in lacertid lizards

1. We investigated the association between field body temperatures (T_b), field air temperatures (T_a), and their differences (Δ) with measurements of foraging activity (percentage of time moving (PTM), number of movements per minute (MPM) and proportion of prey attacked while moving (PAM)) for 25 species of lacertid lizards.

2. Lizards active at relatively high field body temperatures tended to have higher PTM and PAM values. We found no association between temperatures and MPM. The difference Δ did not co-vary with PTM and MPM, but showed a positive trend with PAM.

3. Our results seem robust with regard to the assumptions of different models of evolution and to the phylogenetic trees used.