High Depth-of-Field Nanostructures by Rotational Near-Field Photolithography

Plasmonics - Rotational near-field photolithography uses one or an array of plasmonic lenses to directly pattern features on a rotating substrate that is coated with a very sensitive photoresist....     

Fabrication of a circular PDMS microchannel for constructing a three-dimensional endothelial cell layer

We describe a simple and efficient fabrication method for generating microfluidic channels with a circular cross-sectional geometry by exploiting the reflow phenomenon of a thick positive photoresist. Initial rectangular shaped positive photoresist micropatterns on a silicon wafer, which were fabricated by a conventional photolithography process, were converted into a half-circular shape by tuning the temperature to around 105 °C. Through optimization of the reflow conditions, we could obtain a perfect circular micropattern of the positive photoresist, and control the diameter in a range from 100 to 400 μm. The resultant convex half-circular photoresist was used as a template for fabricating a concave polydimethylsiloxane (PDMS) through a replica molding process, and a circular PDMS microchannel was produced by bonding two half-circular PDMS layers. A variety of channel dimensions and patterns can be easily prepared, including straight, S-curve, X-, Y-, and T-shapes to mimic an in vivo vascular network. To form an endothelial cell layer, we cultured primary human umbilical vein endothelial cells inside circular PDMS microchannels, and demonstrated successful cell adhesion, proliferation, and alignment along the channel.     

The effect of optic flow cues on honeybee flight control in wind

To minimize the risk of colliding with the ground or other obstacles, flying animals need to control both their ground speed and ground height. This task is particularly challenging in wind, where head winds require an animal to increase its airspeed to maintain a constant ground speed and tail winds may generate negative airspeeds, rendering flight more difficult to control. In this study, we investigate how head and tail winds affect flight control in the honeybee Apis mellifera, which is known to rely on the pattern of visual motion generated across the eye—known as optic flow—to maintain constant ground speeds and heights. We find that, when provided with both longitudinal and transverse optic flow cues (in or perpendicular to the direction of flight, respectively), honeybees maintain a constant ground speed but fly lower in head winds and higher in tail winds, a response that is also observed when longitudinal optic flow cues are minimized. When the transverse component of optic flow is minimized, or when all optic flow cues are minimized, the effect of wind on ground height is abolished. We propose that the regular sidewards oscillations that the bees make as they fly may be used to extract information about the distance to the ground, independently of the longitudinal optic flow that they use for ground speed control. This computationally simple strategy could have potential uses in the development of lightweight and robust systems for guiding autonomous flying vehicles in natural environments.     

Trends in imprint lithography for biological applications

Imprint lithography is emerging as an alternative nano-patterning technology to traditional photolithography that permits the fabrication of 2D and 3D structures with <100 nm resolution, patterning and modification of functional materials other than photoresist and is low cost, with operational ease for use in developing bio-devices. Techniques for imprint lithography, categorized as either 'molding and embossing' or 'transfer printing', will be discussed in the context of microarrays for genomics, proteomics and tissue engineering. Specifically, fabrication by nanoimprint lithography (NIL), UV-NIL, step and flash imprint lithography (S-FIL), micromolding by elastomeric stamps and micro- and nano-contact printing will be reviewed.     

SEXUAL SELECTION AND FEMALE CHOICE IN MOLE CRICKETS (SCAPTERISCUS: GRYLLOTALPIDAE): MODELLING THE EFFECTS OF INTENSITY AND MALE SPACING

ABSTRACT

Attraction of flying mole crickets to individual males calling in an outdoor arena was influenced significantly by the relative intensity of the males calling in the arena. Louder males attracted more individuals than males whose calling songs were less intense. Making simple assumptions about the acoustic output from calling males and about the flight pattern and response of flying females, the differential attraction can be explained by a mathematical model. Computer simulation of the model was used to examine the importance of a male's intensity relative to others and the effect of distance between males on the attraction of females. The model and its relation to active female choice and passive attraction are discussed. The model makes predictions about differences in spacing behaviour of males that maximize attraction relative to other males.     

Synthesis,characterization, and preliminary biological study of poly(3-(tert-butoxycarbonyl)-N-vinyl-2-pyrrolidone)

Poly(3-(tert-butoxycarbonyl)-N-vinyl-2-pyrrolidone) has been synthesized and characterized by gel permeation chromatography, Fourier transform infrared spectroscopy, NMR spectroscopy, and thermal analysis. The polymer is a chemically amplified photoresist. Arrays of lines with 25 microm width and 25 microm spacing were successfully patterned with this polymer by photolithography. Rat fibroblast cells were seeded on these patterned surfaces as well as the smooth glass surface. Phase contrast microscopy showed that cells on the patterned surfaces were strongly aligned and elongated along the grooves as compared to randomly spreading on the smooth surface. Since controlling cell orientation is critical for the development of advanced forms of tissue repair and cell engineering therapies, for example, peripheral nerve repair, production of tendon and ligament substitutes in vitro, and control of microvascular repair, the described polymer may be useful for applications in tissue reconstruction.     

Gliding locomotion of Siberian flying squirrels in low-canopy forests: the role of energy-inefficient short-distance glides

Short glides of less than 20 m seem energy inefficient for the Siberian flying squirrel Pteromys volans as with the northern flying squirrel Glaucomys sabrinus. However, Siberian flying squirrels in low-canopy forests frequently use short glides. Therefore, we sought to clarify the gliding patterns of Siberian flying squirrels for energy-efficient gliding transport in low-canopy forests (mean tree height, 15.3 m) in Hokkaido, Japan, based on records of 66 glides and 35 launch and landing trees. Mean launch height, landing height, and horizontal glide distance were 14.4, 2.7, and 21.4 m, respectively. For short distances, horizontal glide distance was strongly correlated with launch heights but not with launch tree height. For glides of more than 20 m, horizontal glide distance was significantly correlated with both launch height and launch tree height. The mean heights of launch and landing trees for short glides were 15.6 and 19.5 m, respectively. For long glides, these heights were 22.7 and 19.2 m. For short glides, mean launch tree height did not differ from overall mean tree height. However, for long glides, the mean launch tree height was greater than the overall mean tree height. Also, for short glides, the height of the landing tree was greater than that of the launch tree. Launch trees used for long glides were as high as the landing trees used in short glides. From these results, we conclude that Siberian flying squirrels in low-canopy forests save energy by gliding initially from a tree with sufficient height to permit a glide to a taller tree. This taller tree then permits long-distance glides that are energetically more efficient.     

Collision risk and micro-avoidance rates of birds with wind turbines in Flanders

Capsule Local factors can lead to strong variation in mortality rate and collision risk that obscures possible effects of turbine size in wind farms.

Aims The impact of bird collisions was studied at eight land-based wind farm sites with a total of 66 small to large turbines in order to assess the mortality rate and collision risk.

Methods Searches for collision fatalities were performed under all turbines with a minimum search interval of 14 days. Mortality rate was calculated with corrections for available search area, scavenging and search efficiency. Flight movements of birds crossing five of the wind farm sites were recorded during a minimum of four days per site. Actual collision risk was then calculated as the number of collision fatalities relative to the average surveyed flight intensity.

Results Mortality rate was 21 birds per turbine per year on average. Most fatalities were local common species (e.g. gulls) but rarer species were also found (e.g. terns, raptors and waders). Collision risk of gulls was 0.05% and 0.08% on average for birds, respectively, flying at turbine and rotor height through the wind farms (0.09% and 0.14% maximum). Large gulls had a significant higher collision risk than small gulls at rotor height. Mortality rate and collision risk were not significantly related to turbine size. The results were integrated in a widely used collision risk model to obtain information of micro-avoidance, i.e. the proportion of birds that fly through the wind farm but avoid passing through the rotor swept area of the turbines. For gulls, this micro-avoidance was 96.1% and 96.3% on average for birds, respectively, flying at turbine and rotor height through the wind farms.

Conclusion The results indicate that local factors can lead to strong variation in mortality rate and collision risk that obscures possible effects of turbine size in wind farms. However, large turbines have more installed capacity (MW), so repowering wind farms with larger but fewer wind turbines, could reduce total mortality at certain locations.     

Analysis of the Disk-to-Disk Energy Transfer Processes in C-Phycocyanin Complexes by Computer Simulation Technique

Based on the crystal structure and spectral properties of C-phycocyanin (C-PC) from cyanobacteria, models for complexes with 2 and 3 C-PC hexamer disks were built and the energy transfer dynamic properties were studied by the use of stochastic computer simulation approach. In addition, an experimental parameter of 0.056 ps^–1, corresponding to a time constant of 18 ps, derived from the previous time-resolved measurement, was used for simulation of the energy transfer process from the three terminal symmetrically equivalent ₈₄ chromophores of the core-linked disk to an ₈₄ chromophore of the allophycocyanin (APC) core. The simulation showed: (1) The disk-to-disk energy transfer can be as fast as several picoseconds. (2) The energy transfer efficiencies from the first disk to the core would depend on the length of the rod (i.e. the number of disks). Efficiencies of 0.95, 0.87, and 0.75 were found for the rods with 1, 2 and 3 hexamer disks, respectively. (3) The energy transfer along a rod in a native phycobilisome (PBS) is probably very close to the one-way manner. It is the core of PBS that makes the excitation energy be transferred fast in a nearly one-way manner.     

Untersuchungen zum Problem der Wachstumsregulation

Summary A growth-regulation-system is defined in mathematical terms in order to interpret the observed behavior of regenerating and growing imaginal disks of the wings inEphestia kühniella.It is assumed that the growth-rate of an imaginal disk depends upon two variables, a variablek which is interpreted as the concentration of the moulting hormone and a second variablez representing the size of the disk measured by the number of cells. A rising hormone concentration tends to increase and a rising number of cells tends to decrease the growth-rate of a disk. If two imaginal disks of different size are present in one larva and the concentration of the moulting hormone is the same for both, then the growth-rate of the smaller imaginal disk can only be greater than or equal to the growth-rate of the larger one. The model contains the possibility that a small imaginal disk grows independently of the hormone level with a maximum and constant rate.On the basis of that model some theorems are derived in order to simplify the interpretation of the empirical data which consist of daily counts of cell divisions on the upper side of the imaginal disks after successive extirpation or one, two of three imaginal disks. The data do not contradict the model and suggest that before reaching a critical size the regenerating imaginal disk grows independently of the hormone level while afterwards the growth-rate depends upon the two variables mentioned above.Some ideas are discussed about the control of the hormone level and the conditions under which the time for the regulation of size differences is minimized.

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Die Arbeit wurde von der Deutschen Forschungsgemeinschaft unterstützt. FrauHildegard Framenau und Herrn Dr.Eduard Amtmann danke ich für ihre Mitarbeit.     

SU-8-carbon composite as conductive photoresist for biochip applications

A composite photoresist has been developed for the direct photopatterning of electrodes useful as biochip substrates. The material is composed of SU-8 polymer added with graphite carbon filler which enables patterning of conductive thin films (22μm) on both glass substrate and transparency flexible film with a standard UV photolithography protocol. The resolution obtained using the conductive composite compared well with the bare resist, with lateral resolutions of 5 and 10μm for bare and conductive resists, respectively. The obtained electrodes, after an electrochemical pre-treatment, exhibited very good electrochemical behaviors, opening the path to various electrochemical detections and grafting possibilities. In order to demonstrate the potentialities of the developed material in the biosensors and biochips field, DNA probes were electrografted, using diazonium chemistry, directly at the composite photoresist surface. Target oligonucleotide interactions were detected using chemiluminescent labeling and a satisfactory detection limit of 0.25nM target sequence was demonstrated with a detection ranging over three orders of magnitude.     

Ring Gap Resonance Modes on Disk/Film Coupling System Caused by Strong Plasmon Interaction

Ring modes with large wave vectors cannot be easily excited on a single disk by the plane wave illumination with the polarization parallel to the disk interface. In this work, we show that special antisymmetric ring gap modes on the surface of the disk in close proximity to the metallic thin film can be excited in the visible light region of the electromagnetic spectrum. In the presence of the film, the strong plasmon interaction between disk and film causes ring gap modes to have lower energies and be more easily excited. We apply the plasmon hybridization method to illustrate the ring gap modes arising from the interaction between the localized disk plasmons and the continuum surface plasmons. The calculated hybridization data show good agreement with the results of finite element simulations. The excitation of ring gap modes provides further insight into the strong coupling of plasmons and the design of novel nanostructures.

     

The woolly flying squirrel and gliding: does size matter?

The woolly flying squirrelEupetaurus cinereus! Thomas, 1888 is the longest sciurid and most massive mammalian glider in the world. Because of this, there has been some question about the squirrel’s gliding ability. I document three glide events performed by this species. These glide events, coupled with comparisons of glide ratios, ponderal ratios, and a log-log plot of head + body length versus body mass with other flying squirrels, demonstrates that the woolly flying squirrel, despite its size, is a capable glider and is no more robust than other flying squirrels. Predation attempts that were observed during glide events are discussed within an evolutionary context.     

Analysis and Simulation of a Novel Localized Surface Plasmonic Highly Sensitive Refractive Index Sensor

Dividing a metal nanoparticle into smaller components and the occurrence of the plasmonic phenomenon in the gap between these components can improve the sensitivity of the detector to variation of the refraction coefficient of liquid. In this paper, in a constant volume of metal, a golden disk is divided into two rings and one smaller disk. With a proper arrangement of these components, the surface plasmon resonance phenomenon takes place at the wavelength of 945.7 nm. The occurrence of this phenomenon increases the field in the distance between nanoparticles surrounded by liquid. The sensitivity of the detector that designed using nanodisks is 300 nm/RIU while it increases to 500 nm/RIU for the new structure. The increase of LSPR displacement, for a variation of 0.01 in the liquid refraction coefficient, from 3 nm for a disk to 5 nm for a proposed structure verifies a 67% improvement in the sensitivity of the sensor.

     

Co-polymerization of MTPC (methylene tri p-cresol) and m-cresol using CiP (Coprinus cinereus peroxidase) to improve the dissolution characteristics of the enzyme-catalyzed polymer

MTPC (Methylene tri p-cresol) and m-cresol were copolymerized by Coprinus cinereus peroxidase in aqueous acetone. Although MTPC did not dissolve completely in the aqueous acetone, copolymerization was achieved owing to the radical transfer between solute and solid surface. Various polymerized products with different molecular weights and hydroxyl values were synthesized depending upon reaction compositions (ratio of MTPC to m-cresol and buffer to acetone). Poly(MTPC–m-cresol), a copolymer of MTPC and m-cresol, was mixed with a diazonaphthoquinone derivative to form a new type of photoresist, a thin film of which was formed on a silicon wafer and immersed in alkaline solution (tetramethylammonium hydroxide) to measure speed of dissolution. Poly(MTPC–m-cresol), with higher hydroxyl value (over 80%), showed remarkably improved dissolution characteristics (dark loss in alkaline solution decreased by almost half), which is prerequisite for sensitive photoresist polymer.     

Root biomechanics in Rhizophora mangle: anatomy,morphology and ecology of mangrove’s flying buttresses

Background and Aims Rhizophora species of mangroves have a conspicuous system of stilt-like roots (rhizophores) that grow from the main stem and resemble flying buttresses. As such, the development of rhizophores can be predicted to be important for the effective transmission of dynamic loads from the top of the tree to the ground, especially where the substrate is unstable, as is often the case in the habitats where Rhizophora species typically grow. This study tests the hypothesis that rhizophore architecture in R. mangle co-varies with their proximity to the main stem, and with stem size and crown position.Methods The allometry and wood mechanical properties of R. mangle (red mangrove) trees growing in a mangrove basin forest within a coastal lagoon in Mexico were compared with those of coexisting, non-buttressed mangrove trees of Avicennia germinans. The anatomy of rhizophores was related to mechanical stress due to crown orientation (static load) and to prevailing winds (dynamic load) at the study site.Key Results Rhizophores buttressed between 10 and 33 % of tree height. There were significant and direct scaling relationships between the number, height and length of rhizophores vs. basal area, tree height and crown area. Wood mechanical resistance was significantly higher in the buttressed R. mangle (modulus of elasticity, MOE = 18·1 ± 2 GPa) than in A. germinans (MOE = 12·1 ± 0·5 GPa). Slenderness ratios (total height/stem diameter) were higher in R. mangle, but there were no interspecies differences in critical buckling height. When in proximity to the main stem, rhizophores had a lower length/height ratio, higher eccentricity and higher xylem/bark and pith proportions. However, there were no directional trends with regard to prevailing winds or tree leaning.Conclusions In comparison with A. germinans, a tree species with wide girth and flare at the base, R. mangle supports a thinner stem of higher mechanical resistance that is stabilized by rhizophores resembling flying buttresses. This provides a unique strategy to increase tree slenderness and height in the typically unstable substrate on which the trees grow, at a site that is subject to frequent storms.     

Visual control of steering in locust flight: the effects of head movement on responses to roll stimuli

The contribution of head movement to the control of roll responses in flying locusts (Locusta migratoria) has been examined (i) on a flight balance, recording the angles through which the locust turns when following an artificial horizon; (ii) by recording activity in a pair of flight muscles in restrained conditions; and (iii) by observations on free flying locusts. Responses were compared when the head was free to turn about the thorax, as normal, and when the head was waxed to the thorax, blocking any relative motion between the two (head-fixed). These experiments suggest that the major signal generating corrective roll manoeuvres is the visual error between the angle of the head and the horizon, rather than a signal that includes a measure of the head-thorax angle.

Close encounters among flying locusts produce wing-beat coupling

Any flying animal leaves behind a wake of turbulent air. Thus, a closely tailing neighbor may be buffeted by complex aerodynamic forces. We report here that pairs of tethered locusts (Locusta migratoria) flying in tandem in a wind tunnel, couple their wing-beats to one another. Wind-receptive hairs on the rear partner's head provide the main sensory input that produces the coupling. The phase angle of coupling depends upon the distance between the individuals. By phase-coupling to a forward neighbor's wake, a locust may turn this turbulence to its own aerodynamic advantage. Moreover, within a large swarm local groups of locusts may fly in a functionally integrated manner.     

Avian Cerebellar Floccular Fossa Size Is Not a Proxy for Flying Ability in Birds

Extinct animal behavior has often been inferred from qualitative assessments of relative brain region size in fossil endocranial casts. For instance, flight capability in pterosaurs and early birds has been inferred from the relative size of the cerebellar flocculus, which in life protrudes from the lateral surface of the cerebellum. A primary role of the flocculus is to integrate sensory information about head rotation and translation to stabilize visual gaze via the vestibulo-occular reflex (VOR). Because gaze stabilization is a critical aspect of flight, some authors have suggested that the flocculus is enlarged in flying species. Whether this can be further extended to a floccular expansion in highly maneuverable flying species or floccular reduction in flightless species is unknown. Here, we used micro computed-tomography to reconstruct “virtual” endocranial casts of 60 extant bird species, to extract the same level of anatomical information offered by fossils. Volumes of the floccular fossa and entire brain cavity were measured and these values correlated with four indices of flying behavior. Although a weak positive relationship was found between floccular fossa size and brachial index, no significant relationship was found between floccular fossa size and any other flight mode classification. These findings could be the result of the bony endocranium inaccurately reflecting the size of the neural flocculus, but might also reflect the importance of the flocculus for all modes of locomotion in birds. We therefore conclude that the relative size of the flocculus of endocranial casts is an unreliable predictor of locomotor behavior in extinct birds, and probably also pterosaurs and non-avian dinosaurs.