Perfect Absorption of Light by Coherently Induced Plasmon Hybridization in Ultrathin Metamaterial Film

We demonstrated numerically that light can be totally absorbed by an ultrathin metamaterial film through coherently induced plasmon hybridization. Two fundamental modes, namely symmetrical and antisymmetrical modes, are observed in the metal–insulator–metal structure and attributed to the electric and magnetic resonance, respectively. Each kind of resonance is related to a distinct absorption peak for the corresponding coherent inputs. In particular, it is found that the antisymmetrical absorption is almost omnidirectional and suitable for divergent beams with arbitrary polarization and angle of incidence. To interpret the interaction of magnetic and electric fields with the structure, effective material parameters of the metamaterial are also retrieved, showing good agreement with the intuitive discussion. Furthermore, the general condition of coherent perfect absorption in a metamaterial thin film is given, which could be helpful for the design and understanding of such absorbers.     

Surface Plasmon Polariton Modes at Interface of a Metal and an Ambichiral Sculptured Thin Film

The excitation of surface plasmon polariton (SPP) at interface of a metal and an ambichiral sculptured thin film was theoretically investigated in the Kretschmann configuration using the transfer matrix method. The dependence of SPP modes for a P polarization plane wave on the incident angle of light and the angle of rise of nanocolumns of ambichiral dielectric medium was reported. We found that multiple SPP modes are excited at the interface of metal and ambichiral dielectric medium. The results of phase speed as a function of pitch showed only that a SPP mode can be excited at all pitches.     

Surface Plasmon Polariton Propagation at the Interface of a Metal and an Ambichiral Nanostructured Medium

The propagation of a surface plasmon polariton wave at the interface of a metal and an ambichiral nanostructured medium was theoretically investigated in the Kretschmann configuration using transfer matrix method. The dependence of optical absorption linear polarization on structural parameters was reported. The results were compared with those obtained from the interface of a metal and a chiral dielectric medium as a reference structure. We found that multiple plasmon modes are excited at the interface of metal and ambichiral dielectric medium. Our calculations revealed that there exist five plasmon modes for chiral, trigonal, and tetragonal structures; three plasmon modes for pentagonal structure; two plasmon modes for hexagonal structure; and one plasmon mode for dodecagonal structure that propagate with different phase speeds. The obtained results showed that only one plasmon mode occurs at all pitches, while other modes exist at some of the pitches of anisotropic chiral and ambichiral dielectric mediums. The time-averaged Poynting vector versus the thickness of metal film confirmed that the energy of photons of incident light is transferred to surface plasmon polariton quasiparticles and the surface plasmon polariton wave is localized at the interface of metal and ambichiral dielectric medium.     

Efficient Extraction of Fluorescence Emission Utilizing Multiple Surface Plasmon Modes from Gold Wire Gratings

We demonstrate directional enhanced fluorescence emission from fluorophores located above gold wire gratings. In contrast to previous studies on corrugated films, efficient coupling was recorded for multiple plasmon modes associated with both the active and substrate side of the wires. This difference is likely due to the subtle differences in how light interacts with corrugated films versus metal films with periodic subwavelength slots. For corrugated films, coupling between modes on opposite sides of the grating are out of phase, and therefore plasmon modes on the opposite side of the grating are only weakly excited. For wire gratings, transmission and reflection features have been modeled well with a dynamical diffraction model that includes surface plasmons, which allows for efficient coupling to surface plasmon modes on both sides of the grating. We also compared the two mechanisms for fluorescent enhancement, namely the intense electromagnetic field associated with surface plasmons and excited fluorophores radiating via surface plasmon modes. We found the latter mechanism clearly dominant.     

Spectral Tunability and Selectivity Based on Multiple Resonance Modes in End-Coupled Sectorial-Ring Cavity Waveguide

A plasmonic nanodevice in end-coupled sectorial-ring cavity waveguide is reported, and the spectral characteristic of the novel system is studied. It is built with sectorial-ring cavity resonator end-coupled to plasmonic waveguide, and  this resonator is an oversize central angle (θ), alterable symmetry plane angle (ϕ), and fixed radius and gap, which has the advantages of forming split-ring-like, realizing asymmetrical cavity, and achieving spectral tunability and selectivity. The two-dimensional simulation indicates that the extra noninteger and traditional integer resonance modes are excited in the novel system, and the noninteger resonance modes are not achievable for the circular-ring cavity waveguide. It displays that these resonance modes of the novel system are drastically affected by changing the position of ϕ, which has different changes on maximum transmittances but is almost unchanged on resonance wavelengths. Importantly, the multiple resonance modes are highly sensitive to ϕ, and the proper modes are significantly enhanced, weakened, excited, or disappeared. It also displays that these resonance modes of the novel system are efficiently affected by changing the size of θ, which has similar and different influences on resonance wavelengths and maximum transmittances. This work shows that the method helps in designing accurately the transmission spectrum with prospective modes in nanophotonics, and the structure facilitates for realization of tunable and selective multichannel nanofilter or nanosensor in integration.

     

Surface waves on the boundary of a conducting medium and their excitation by a relativistic electron beam

Excitation of surface waves by a relativistic electron beam propagating over a conducting cylindrical medium (metal or highly ionized plasma) is investigated theoretically. Dispersion relations describing the linear interaction of surface electromagnetic waves with a monoenergetic electron beam are derived, and the growth rates and spatial amplification factors of excited waves are determined. Condition for the nonlinear trapping of the beam electrons by a surface wave is used to determine the maximum amplitude of the excited wave and the optimal radiator length. The electric field of a surface wave excited by an electron beam is estimated for a particular case.     

Electromagnetic Radiation Influence on Nonlinear Charge and Energy Transport in Biosystems

The influence of electromagnetic radiation (EMR) on charge and energy transport processes in biological systems is studied in the light of the soliton model. It is shown that in the spectrum of biological effects of EMR there are two frequency resonances corresponding to qualitatively different frequency dependent effects of EMR on solitons. One of them is connected with the quasiresonance dynamic response of solitons to the EMR. At EMR frequencies close to the dynamic resonance frequency the solitons absorb energy from the field and generate intensive vibrational modes in the macromolecule. The second EMR resonance is connected with soliton decay due to the quantum mechanical transition of the system from the bound soliton state into the excited unbound states.     

Subwavelength Micro-Antenna for Achieving Slow Light at Microwave Wavelengths via Electromagnetically Induced Transparency in 2D Metamaterials

In this paper, a tunable slow light 2D metamaterial is presented and investigated. The metamaterial unit cell is composed of three metallic strips as radiative and non-radiative modes. Once introducing asymmetry, a transparency window induced by coupling between the dark and bright modes is observed. The transmission characteristics and the slow light properties of the metamaterial are verified by numerical simulation, which is in a good agreement with theoretical predictions. The impact of asymmetric parameter on transparency window is also investigated. Simulation results show the spectral properties and the group index of the proposed 2D metamaterial can be tunned by adjusting asymmetric structure parameter, temperature and also the metal used in the metamaterial. Furthermore, the electromagnetic field distributions, excited surface currents, induced electric dipole and quadruples, and slow light properties of the metamaterial are investigated in details as well as transmission spectral responses. The outstanding result is that, the 2D-metamaterial is in a high decrease of the group velocity and therefore slow light applications, because in the best state, the group velocity in our structure decreases by a factor of 221 at T=100 K using copper as metal in optimization asymmetric case.     

Evidence from 13C NMR for polarization of the carbonyl of oxaloacetate in the active site of citrate synthase

The carbon-13 NMR spectrum of oxaloacetate bound in the active site of citrate synthase has been obtained at 90.56 MHz. In the binary complex with enzyme, the positions of the resonances of oxaloacetate are shifted relative to those of the free ligand as follows: C-1 (carboxylate), -2.5 ppm; C-2 (carbonyl), +4.3 ppm; C-3 (methylene), -0.6 ppm; C-4 (carboxylate), +1.3 ppm. The change observed in the carbonyl chemical shift is successively increased in ternary complexes with the product [coenzyme A (CoA)], a substrate analogue (S-acetonyl-CoA), and an acetyl-CoA enolate analogue (carboxymethyl-CoA), reaching a value of +6.8 ppm from the free carbonyl resonance. Binary complexes are in intermediate to fast exchange on the NMR time scale with free oxaloacetate; ternary complexes are in slow exchange. Line widths of the methylene resonance in the ternary complexes suggest complete immobilization of oxaloacetate in the active site. Analysis of line widths in the binary complex suggests the existence of a dynamic equilibrium between two or more forms of bound oxaloacetate, primarily involving C-4. The changes in chemical shifts of the carbonyl carbon indicate strong polarization of the carbonyl bond or protonation of the carbonyl oxygen. Some of this carbonyl polarization occurs even in the binary complex. Development of positive charge on the carbonyl carbon enhances reactivity toward condensation with the carbanion/enolate of acetyl-CoA in the mechanism which has been postulated for this enzyme. The very large change in the chemical shift of the reacting carbonyl in the presence of an analogue of the enolate of acetyl-CoA supports this interpretation.     

Multinuclear NMR studies of the divalent metal binding site of NADP-dependent isocitrate dehydrogenase from pig heart

The metal activator site of NADP-dependent isocitrate dehydrogenase from pig heart has been probed by using 113Cd and 25Mg NMR as well as manganese paramagnetic relaxation of nuclei in the fast-exchanging ligands alpha-ketoglutarate and adenosine 2'-monophosphate. Cadmium NMR shows that cadmium, bound to the enzyme in the presence of isocitrate, has a resonance at 9 ppm relative to cadmium perchlorate, while the free Cd-isocitrate complex has a resonance at -23 ppm. Comparison with model compounds and previously studied proteins indicates that cadmium is coordinated with six oxygen ligands. Measurements as a function of cadmium concentration give a dissociation constant of 66 microM and a dissociation rate constant of 1.5 X 10(4) s-1 at pH 7.0. 25Mg NMR demonstrates that the line width of the magnesium resonance is increased upon binding to isocitrate dehydrogenase. A further increase in line width is observed upon addition of isocitrate. Measurement of line widths as a function of temperature reveals that in the binary complex between magnesium and enzyme, exchange is the major contributor to broadening while in the ternary complex containing isocitrate, the intrinsic relaxation in the bound state is also important, suggesting an increase in the dissociation rate constant for magnesium from the ternary complex. Paramagnetic relaxation studies of nuclei of alpha-ketoglutarate, bicarbonate, and adenosine 2'-monophosphate locate the divalent metal within the active site. The results with adenosine 2'-monophosphate show that atoms in the adenosine moiety of the coenzyme are at least 8 A from the metal site.(ABSTRACT TRUNCATED AT 250 WORDS)     

Excitation and Optimization Modeling of Surface Plasmon Polaritons in a Concentric Circular Metallic Grating Film

Interaction behavior between surface plasmon polaritons (SPPs) and Hankel-distributed diffracted waves (DWs) on a silver concentric circular grating film is studied using a rigorous coupled-wave technique for circular structure. It is shown that the numerical technique reveals the excitation characteristics of SPPs in the circular metal grating as well as provides an accurate calculation of SPP intensities for further optimization designs. Results show that the SPPs can be excited by various DWs through the control of wavelength and angle of the incident light. The most efficient excitation of SPPs from this circular metal grating structure can be obtained from the +1^st-order DW under a normal incidence with wavelength close to the grating period, and the optimal thickness and duty cycle of the grating are found to be 370 and 0.5 nm, respectively. It is shown that the optimized intensity of SPPs excited from circular metal grating can be higher than that from strip metal grating by over one order of magnitude.     

Tuning the Fano Resonance Between Localized and Propagating Surface Plasmon Resonances for Refractive Index Sensing Applications

Localized and propagating surface plasmon resonances are known to show very pronounced interactions if they are simultaneously excited in the same nanostructure. Here, we study the Fano interference that occurs between localized surface plasmon resonance (LSPR) and propagating surface plasmon polariton (SPP) modes by means of phase-sensitive spectroscopic ellipsometry. The sample structures consist of periodic gratings of gold nanodisks on top of a continuous gold layer and a thin dielectric spacer, in which the structural dimensions were tuned in such a way that the dipolar LSPR mode and the propagating SPP modes are excited in the same spectral region. We observe pronounced anti-crossing and strongly asymmetric line shapes when both modes move to each other’s vicinity, accompanied of largely increased phase differences between the respective plasmon resonances. Moreover, we show that the anti-crossing can be exploited to increase the refractive index sensitivity of the localized modes dramatically, which result in largely increased values for the figure-of-merit which reaches values between 24 and 58 for the respective plasmon modes.     

Radiative decay engineering 3. Surface plasmon-coupled directional emission

A new method of fluorescence detection that promises to increase sensitivity by 20- to 1000-fold is described. This method will also decrease the contribution of sample autofluorescence to the detected signal. The method depends on the coupling of excited fluorophores with the surface plasmon resonance present in thin metal films, typically silver and gold. The phenomenon of surface plasmon-coupled emission (SPCE) occurs for fluorophores 20-250 nm from the metal surface, allowing detection of fluorophores over substantial distances beyond the metal-sample interface. SPCE depends on interactions of the excited fluorophore with the metal surface. This interaction is independent of the mode of excitation; that is, it does not require evanescent wave or surface-plasmon excitation. In a sense, SPCE is the inverse process of the surface plasmon resonance absorption of thin metal films. Importantly, SPCE occurs over a narrow angular distribution, converting normally isotropic emission into easily collected directional emission. Up to 50% of the emission from unoriented samples can be collected, much larger than typical fluorescence collection efficiencies near 1% or less. SPCE is due only to fluorophores near the metal surface and may be regarded as emission from the induced surface plasmons. Autofluorescence from more distal parts of the sample is decreased due to decreased coupling. SPCE is highly polarized and autofluorescence can be further decreased by collecting only the polarized component or only the light propagating with the appropriate angle. Examples showing how simple optical configurations can be used in diagnostics, sensing, or biotechnology applications are presented. Surface plasmon-coupled emission is likely to find widespread applications throughout the biosciences.     

Observation of terahertz vibrations in Pyrococcus furiosus rubredoxin via impulsive coherent vibrational spectroscopy and nuclear resonance vibrational spectroscopy--interpretation by molecular mechanics

We have used impulsive coherent vibrational spectroscopy (ICVS) to study the Fe(S-Cys)(4) site in oxidized rubredoxin (Rd) from Pyrococcus furiosus (Pf). In this experiment, a 15 fs visible laser pulse is used to coherently pump the sample to an excited electronic state, and a second <10 fs pulse is used to probe the change in transmission as a function of the time delay. PfRd was observed to relax to the ground state by a single exponential decay with time constants of approximately 255-275 fs. Superimposed on this relaxation are oscillations caused by coherent excitation of vibrational modes in both excited and ground electronic states. Fourier transformation reveals the frequencies of these modes. The strongest ICV mode with 570 nm excitation is the symmetric Fe-S stretching mode near 310 cm(-1), compared to 313 cm(-1) in the low temperature resonance Raman. If the rubredoxin is pumped at 520 nm, a set of strong bands occurs between 20 and 110 cm(-1). Finally, there is a mode at approximately 500 cm(-1) which is similar to features near 508 cm(-1) in blue Cu proteins that have been attributed to excited state vibrations. Normal mode analysis using 488 protein atoms and 558 waters gave calculated spectra that are in good agreement with previous nuclear resonance vibrational spectra (NRVS) results. The lowest frequency normal modes are identified as collective motions of the entire protein or large segments of polypeptide. Motion in these modes may affect the polar environment of the redox site and thus tune the electron transfer functions in rubredoxins.     

Entropic Forces Drive Cellular Contact Guidance

Contact guidance—the widely known phenomenon of cell alignment induced by anisotropic environmental features—is an essential step in the organization of adherent cells, but the mechanisms by which cells achieve this orientational ordering remain unclear. Here, we seeded myofibroblasts on substrates micropatterned with stripes of fibronectin and observed that contact guidance emerges at stripe widths much greater than the cell size. To understand the origins of this surprising observation, we combined morphometric analysis of cells and their subcellular components with a, to our knowledge, novel statistical framework for modeling nonthermal fluctuations of living cells. This modeling framework is shown to predict not only the trends but also the statistical variability of a wide range of biological observables, including cell (and nucleus) shapes, sizes, and orientations, as well as stress-fiber arrangements within the cells with remarkable fidelity with a single set of cell parameters. By comparing observations and theory, we identified two regimes of contact guidance: 1) guidance on stripe widths smaller than the cell size (w ≤ 160 μm), which is accompanied by biochemical changes within the cells, including increasing stress-fiber polarization and cell elongation; and 2) entropic guidance on larger stripe widths, which is governed by fluctuations in the cell morphology. Overall, our findings suggest an entropy-mediated mechanism for contact guidance associated with the tendency of cells to maximize their morphological entropy through shape fluctuations.     

Excited state charge-transfer dynamics study of poplar plastocyanin by ultrafast pump-probe spectroscopy and molecular dynamics simulation

We have applied ultrafast pump-probe spectroscopy to investigate the excited state dynamics of the blue copper protein poplar plastocyanin, by exciting in the blue side of its 600-nm absorption band. The decay of the charge-transfer excited state occurs exponentially with a time constant of approximately 280 fs and is modulated by well visible oscillations. The Fourier transform of the oscillatory component, besides providing most of the vibrational modes found by conventional resonance Raman, presents additional bands in the low frequency region modes, which are reminiscent of collective motions of biological relevance. Notably, a high frequency mode at approximately 508 cm(-1), whose dynamics are consistent with that of the excited state and already observed for other blue copper proteins, is shown to be present also in poplar plastocyanin. This vibrational mode is reproduced by a molecular dynamics simulation involving the excited state of the copper site.     

A Surface Design for Enhancement of Light Trapping Efficiencies in Thin Film Silicon Solar Cells

We report on a surface design of thin film silicon solar cells based on silver nanoparticle arrays and blazed grating arrays. The light transmittance is increased at the front surface of the cells, utilizing the surface plasmon resonance effect induced by silver nanoparticle arrays. As a reflection layer structure, blazed gratings are placed at the rear surface to increase the light reflectance at bottom of the thin film cells. With the combination of the silver nanoparticle arrays and the blazed gratings, the light trapping efficiency of the thin film solar cell is characterized by its light absorptance, which is determined from the transmittance at front surface and the reflectance at bottom, via the finite-difference time-domain (FDTD) numerical simulation method. The results reveal that the light trapping efficiency is enhanced as the structural parameters are optimized. This work also shows that the surface plasmon resonance effect induced by the silver nanoparticles and the grating characteristics of the blazed gratings play crucial roles in the design of the thin film silicon solar cells.     

Measurements of the cross-bridge attachment/detachment process within intact sarcomeres by surface plasmon resonance.

We have developed a surface plasmon resonance (SPR) system to monitor the cross-bridge attachment/detachment process within intact sarcomeres from mouse heart muscle. SPR occurs when laser light energy is transferred to surface plasmons that are resonantly excited in a metal (gold) film. This resonance manifests itself as a minimum in the reflection of the incident laser light and occurs at a characteristic angle. The angle of the SPR occurrence depends on the dielectric permittivity of the sample medium adjacent to the gold film. Purified sarcomeric preparations are immobilized onto the gold film in the presence of a relaxing solution. Replacement of the relaxing solution with increasing Ca(2+) concentration solution activates the cross-bridge interaction and produces an increase in the SPR angle. These results imply that the interaction of myosin heads with actin within an intact sarcomere changes the dielectric permittivity of the sarcomeric structure. In addition, we further verify that SPR measurements can detect the changes in the population of the attached cross-bridges with altered concentrations of phosphate, 2,3-butanedione monoxime, or adenosine triphosphate at a fixed calcium concentration, which have been shown to reduce the force and increase the cross-bridge population in attached state. Thus, our data provide the first evidence that the SPR technique allows the monitoring of the cross-bridge attachment/detachment process within intact sarcomeres.     

Molecular Dynamics Simulation of Collective Motions in Binary Liquids

Collective dynamic properties of different kind of binary liquid mixtures have been investigated by molecular dynamics simulation. The study includes both the longitudinal and the transverse current spectra in simple liquid alloys, 1:1 molten salts and liquid binary mixtures of neutral particles with an ionic-like structure. These systems were chosen as representative of binary liquids with different static structures in order to analyse the effects of structural ordering on the mechanisms of dynamic collective properties. The effect of the mass asymmetry between the two species in the mixture has been also discussed from the results for two different mass ratios for each kind of structure. Two length scales have been considered. On the one hand, the hydrodynamic scale (low wave numbers), where the modes for the partial currents of the two species are characterised by very close frequencies. On the other hand, the molecular scale (higher wave numbers), where the characteristic frequencies for the two species show noticeable differences. Vibrational concentration current modes (optic modes) have been found in neutral mixtures though their influence is rather weak, being the collective dynamic properties of this kind of systems dominated by the mass current modes (acoustic modes). On the contrary, in mixtures of charged particles such as molten salts the contribution of the concentration (charge) currents to the collective dynamics is important and optic modes can be characterised by a well-defined frequency for a wide range of wave numbers. It has been observed that heavy particles have a more relevant role on the mass current correlations whereas light particles play a dominant role on the concentration current correlations. The overall results for the three kinds of liquid mixtures analysed in this paper show that both the longitudinal and transverse current spectra are little dependent on the static structure of the system whereas marked differences are revealed when the particles in the system are either neutral or carry an electric charge.     

Labyrinthine versus straight-striped patterns generated by two-dimensional Turing systems

Striped patterns are often observed on fish skin. Such patterns have been accounted for by reaction-diffusion (RD) Turing-type models, in which two substances can spontaneously form a spatially heterogeneous pattern in a homogeneous field. Among the striped patterns generated by Turing-type models, some are "straight-striped patterns," with many stripes running in parallel, while others are "labyrinthine patterns," in which the stripes often change direction, merge with each other, and frequently branch out. RD models differ in terms of their tendency to generate either labyrinthine or straight-striped patterns. Here, we studied the conditions under which either a labyrinthine or straight-striped pattern would emerge. First, we defined an index for stripe clearness, Sh. Straight-striped patterns (large Sh) are formed if only a narrow range of spatial periods corresponds to an unstable mode. Labyrinthine patterns (small Sh) are formed when a wide range of spatial periods is unstable. More specifically, labyrinthine patterns are formed when the maximum spatial period of unstable modes is more than twice that of the minimum spatial period of unstable modes; otherwise, straight-striped patterns are formed. We then examined RD models with nonlinear reaction terms, including both activator-inhibitor and substrate-depletion models, and we demonstrated that the same conclusions hold with respect to the conditions required for labyrinthine versus straight-striped patterns.