Live benthic foraminiferal faunas along a bathymetrical transect (140-4800 m) in the Bay of Biscay (NE Atlantic)

In a 10-stations bathymetrical transect in the Bay of Biscay, we observed important changes in the density, composition and microhabitats of live foraminiferal faunas from the outer continental shelf to the abyssal plain. Four zones are recognised: (1) at the upper continental shelf (140 m water depth), foraminiferal densities are very high and the superficial sediment is occupied by Bolivina subaenariensis and Valvulineria bradyana. Globobulimina spp., Chilostomella oolina and Nonion fabum dominate the infaunal niches, which are positioned close to the sediment-water interface due to a strong compaction of the vertical succession of redox zones. (2) At the upper continental slope stations (300-1000 m), foraminiferal densities are high and the superficial sediments are dominated by Uvigerina mediterranea/peregrina. Deeper in the sediment, intermediate infaunal niches are occupied by Melonis barleeanus. Due to a deeper oxygen penetration, the deep infaunal taxa Globobulimina spp. and C. oolina live at a considerable depth in the sediment. (3) At the mid and lower slope stations (1000-2000 m) in the superficial sediment Cibicidoides kullenbergi and Hoeglundina elegans progressively replace U. mediterranea. U. peregrina is still a dominant taxon, reflecting its preference for a somewhat intermediate organic flux level. Deep infaunal taxa become increasingly rare. (4) At the lower slope and abyssal plane stations (deeper than 2000 m), faunal densities are very low and the fauna is composed exclusively by shallow infaunal species, such as Nuttallides umboniferus and Melonis pompilioides. The foraminiferal data together with the pore water data in the sediment give evidence of the presence of a trophic gradient from very eutrophic settings at the upper continental shelf towards oligotrophic settings at the abyssal area.     

Relationship of surface sediments and benthic foraminiferal distribution patterns in the Norwegian Channel (northern North Sea)

Our study of the distribution of benthic foraminifers in surface sediment samples from the Norwegian Channel has shown that eight species and five different assemblages are important. The assemblages are dominated byUvigerina peregrina, Bolivina skagerrakensis, Cassidulina laevigata, Elphidium excavatum andBulimina marginata, respectively.Hyalinea balthica, Melonis barleeanum andTrifarina angulosa are also abundant. The first four assemblages and their dominant species can be related to certain water masses with known characteristics. Two species are related to certain types of substrate;M. barleeanum seems to prefer a fine-grained substrate, whileT. angulosa occurs most abundantly where the content of silt and clay is low.B. skagerrakensis andH. balthica occur most abundantly in sediments with a high content of organic carbon, whileT. angulosa shows inverse correlation to the organic carbon content.     

The distribution of Recent benthic foraminifera in the Polar Front region, southwest Atlantic

Twenty-five core-top samples from the Maurice Ewing Bank (MEB) and Islas Orcadas Rise (IOR) were examined to determine the distribution of benthic foraminifera in the vicinity of the Polar Front in the southwest Atlantic Ocean. The Polar Front has a subsurface expression that effects the areal and depth distribution of benthic foraminifera in this region.Three faunal assemblages were identified by Q-mode factor analysis. The shallowest assemblage, dominated by Bulimina aculeata, is present from 1500 to 2600 m on the Maurice Ewing Bank and is associated with potential temperatures of 1.71-0.50°C, salinities of 34.74-34.70‰ and potential density values of 45.84–46.04 sigma-4. A second assemblage, dominated by Uvigerina peregrina, occurs in water depths from 2600 to 3100 m and is associated with potential temperatures of 0.40-0.26°C, salinities of 34.70-34.69‰ and potential density values of 46.05–46.07 sigma-4. The third assemblage is dominated by Nuttallides umbonifera, Ehrenbergina trigona and secondarily by Oridorsalis umbonatus and Pullenia bulloides (the N. umbonifera-E. trigona assemblage) is present form 2770 to 3120 m on the Islas Orcadas Rise. This assemblage is associated with potential temperatures of 0.36-0.14°C, salinities of 34.69-34.68‰, and potential density values of 46.06–46.09 sigma-4. Although the U. peregrina assemblage and the N. umbonifera-E. trigona assemblage overlap bathymetrically, they are present in waters of slightly different properties. The Bulimina aculeata assemblage is within the core of the Lower Circumpolar Deep Water (LCDW), while the other two assemblages occur within transition zones between the LCDW and Weddell Sea Deep Water (WSDW).The difference in the benthic foraminiferal assemblages at similar depths on the Islas Orcadas Rise and the Maurice Ewing Bank is the result of different water-mass regimes separated by the Polar Front.     

Marine microplankton and calcareous nannofossil palaeoecology of the Toarcian stratotype

In the Bifrons to Aalensis Ammonite Zones of the Vrines section (Toarcian stratotype), woody phytoclasts, nonsaccate pollen grains, and marine assemblages (dinoflagellate cysts, acritarchs, and foraminiferal linings) dominate the palynofacies. The dinoflagellate cyst assemblage is cosmopolitan with minor Boreal influences, characterized by relatively high quantities of Micrhystridium, Baltisphaeridium, Mendicodinium spinosum, Nannoceratopsis, and the Parvocysta suite, dominating in turn the marine assemblages. Marine assemblage compositions, both dinoflagellate cysts and acritarchs, and calcareous nannofossil abundances are different in marl and limestone lithotypes of the Vrines section. Calcareous nannofossils are generally more abundant in marls than in limestones, they display however a cyclic pattern of semiquantitative abundances in phase with lithological cycles. Although a diagenetic overprint cannot be completely excluded to explain such a difference, it seems likely that these dissimilarities are in part primary, the results of variations in terms of proximality-distality, and climatic fluctuations. A mean duration of 117.6 Kyr per marl-limestone alternation, and the stacking of four marl-limestone alternations for 470.6 Kyr, suggest a control by the Earth's two orbital eccentricity cycles. It is likely that the palaeoenvironmental conditions, which influenced the formation of marl-limestone alternations, also controlled the variations in marine phytoplankton assemblages.     

Molecular characterization of the non-costate morphotypes of buliminid foraminifers based on internal transcribed region of ribosomal DNA (ITS rDNA) sequence data

We performed molecular phylogenetic analyses of four morphotypes of the benthic foraminiferal genus Bulimina (B. aculeata, B. marginata f. marginata, B. marginata f. denudata, and B. elongata) based on sequences of internal transcribed spacer region of ribosomal DNA (ITS rDNA). Six genetically distinct phylotypes were revealed by our phylogenetic analyses. The six phylotypes basically correspond to the fundamental morphotypes: clades A + B (B. aculeata); clade C (B. elongata); clade D (B. marginata f. denudata); clade E (B. marginata f. marginata genotype 1); and clade F (B. marginata f. marginata genotype 2). All six phylotypes are well distinguished, except phylotype B, which shows only little sequence divergence compared to clade A, possibly indicating that genetic differentiation is in progress. Morphological characters including the direction, placement, and shape of spines, the angle of undercutting of chamber periphery, and the roundness of the chambers were stable among specimens of each clade. In contrast, the length and density of spines, and chamber size, were variable within each clade. These intermediate morphological characters may reflect ecophenotypic variation. Our study clearly shows that the examined B. acuelata, elongata, and denudata morphospecies are genetically separated and that B. marginata is a species complex comprising several genotypes. A novel phylotype represent different morphotype compare to B. marginata f. marginata that can be distinguished based on differences of chamber angularity, the direction, placement, and shape of spines, and test dimensions.     

Identification of zoonotic Giardia genotypes in fish

Apart from a single record in a shark, there have been no published studies conducted on Giardia genotypes in fish. The present study investigated the prevalence of Giardia in cultured fingerlings (n = 227), wild freshwater (n = 227) and wild marine/estuarine species (n = 255) of fish in Western Australia by PCR amplification at the 18S rRNA, glutamate dehydrogenase (gdh), triose phosphate isomerase (tpi) and beta-giardin (bg) loci. Results revealed a low prevalence of Giardia, 3.8% (27/709), in fish hosts. The zoonotic Giardia species, Giardia duodenalis assemblages A, B as well as G. duodenalis assemblage E and Giardia microti were detected. The identification of zoonotic species of Giardia highlights the public health importance of investigating parasites within fish host species.     

Distribution of live benthic Foraminifera at three oceanographically dissimilar sites in the northeast Atlantic: preliminary results

Live (i.e. rose Bengal stained) benthic foraminiferal assemblages in the 0–1 cm layer of multiple core samples were examined at three contrasting sites in the northeast Atlantic as part of the Natural Environment Research Council Deep Ocean Benthic Boundary Layer (BENBO) Thematic Programme. Sites A (3600 m water depth) and C (1900 m) were located in the Rockall Trough while Site B (1100 m) was in the Hatton–Rockall Basin. Wet-sorting sediment residues (>125 m fraction) revealed more abundant (98–190 individuals/10 cm²) and diverse (71–99 species /27 cm²) assemblages than found previously in studies employing dry-sorting techniques. At all three sites, the assemblages were numerically dominated by delicate soft-bodied and agglutinated species, most of which are undescribed. Calcareous taxa formed a relatively small proportion of the assemblages (23% of individuals at Site B, 13% at Site C and 7% at Site A). Conversely, the agglutinated hormosinaceans (mainly Reophax species) became more prominent with increasing depth and accounted for 8% of the assemblage at Site B, 33% at Site C and 51% at Site A. Foraminifera represented 67–81% of the fauna in the samples and greatly outnumbered the metazoans. The assemblage at Site A has similarities with abyssal assemblages, while those at Sites B and C contain characteristic bathyal species. At Site B, Uvigerina peregrina and Melonis barleeanum are abundant, suggesting that there are high organic carbon inputs at this site. Reduced species diversity was observed at Site A following the spring phytodetritus bloom due to the presence of large numbers of juvenile Hoeglundina elegans, although it is not clear whether this species is responding to phytodetritus inputs.     

Boreal Tintinnid Assemblage in the Northwest Pacific and Its Connection with the Japan Sea in Summer 2014

Tintinnids are planktonic ciliates that play an important role in marine ecosystem. According to their distribution in the world oceans, tintinnid genera were divided into several biogeographical types such as boreal, warm water, austral and neritic. Therefore, the oceanic tintinnid assemblage could be correspondingly divided into boreal assemblage, warm water assemblage and austral assemblage. The purpose of this study was to investigate the characteristics of boreal tintinnid assemblage in the Northwest Pacific and the Arctic, and to identify the connection between boreal tintinnid assemblage and neighboring assemblages. Surface water samples were collected along a transect from the East China Sea to the Chukchi Sea in summer 2014. According to the presence of boreal genera and warm water genera, three tintinnid assemblages (the East China Sea neritic assemblage, the Japan Sea warm water assemblage, and the boreal assemblage) were identified along the transect. The boreal assemblage extended from the Chukchi Sea to the waters north of the Sōya Strait. Densities peaks occurred at stations in the two branches of the Alaska Current and decreased both northward and southward. The densities were <10 ind./dm³ at most stations in Arctic region. The dominant genera (Acanthostomella, Codonellopsis, Parafavella, and Ptychocylis) accounted for 79.07±29.67% (n = 49) of the abundance in the boreal assemblage. The densities of the dominant genera covaried with strongly significant positive correlations. Tintinnids with lorica oral diameter of 22–26 μm and 38–42 μm were dominant and contributed 67.35% and 15.13%, respectively, to the total abundance in the boreal assemblage. The distribution and densities of tintinnids in the study area suggest that the Sōya Strait might be a geographical barrier for tintinnids expansion.     

Late Quaternary paleoenvironmental reconstruction of the Tremiti structural high (Central Adriatic Sea) from benthic foraminiferal assemblages

Foraminiferal analyses carried out on the VTR01/8 core (Tremiti Islands, Adriatic Sea) lead to the reconstruction of the paleoenvironmental evolution of the area. Although the core site is located at about 1000 km from the Po delta, this study shows that the installation of the recent sedimentological and run-off system (with a shore parallel clay-belt) is similar to that described at sites much closer to the Po delta. The statistical analysis singled out four associations that correspond to four distinct environments. The ecological preferences of the most abundant taxa that characterize each environment reveal that from the bottom of the core to − 50 cm, there is a slight increase of the water depth after which the water depth increases until the present level. Association A (that comprises subclusters A1, A2 and A3) is characterized by shallow-water taxa (e.g., Ammonia beccarii, Quinqueloculina spp. and Elphidium granosum) showing that in the past an infralittoral environment typified the Tremiti High. The subclusters of Association A show that during the deposition of the lower part of the core there had been an alternation of phases characterized by different degrees of riverine influence: the site was at first under the influence of river outflow (A2) that later bypassed the core site (A3) and then came back, although located further away than before (A1). With the rising of the sea level, the Tremiti High became only marginally affected by river influence because the core site is located at a considerable distance from the Po outlets and seaward with respect to the center of the modern mud-belt. As a matter of fact, association B (Bulimina marginata, Cassidulina carinata and Textularia spp.), which starts at − 46 cm, shows the typical characteristics of the modern mud-belt outer-shelf assemblage, although the presence of opportunistic species is limited by the distant position with respect to the Po delta.     

Effects of accumulations of sediments and drift algae on recruitment of sessile organisms associated with oyster reefs

Increases in sediment and drift algae accumulations have caused degradation of coastal lagoons worldwide. It is well known that these factors are stressors of seagrass beds, sediment fauna and coral reefs. However, little is known about the impacts on temperate hard-bottom assemblages within soft-bottom lagoons. To test if accumulations of sediment and drift algae (stress) affected recruitment of sessile oyster reef organisms, we constructed cages in Hog Island Bay, Virginia that trapped drifting macroalgae (≈ 2.7 kg WW m²) and facilitated sedimentation (≈ 7 mm per 2-3 month). The stress treatments and unstressed controls were placed in front, between, and behind reefs (position) to represent wave exposed (≈ 0.3 m, windy conditions), current exposed (≈ 0.2 m s^− 1, peak tide) and protected (≈ 0 m, 0.0 m s^− 1) habitats. The percentage cover of recruited taxa onto bricks was mapped 4 times during a 1-year period. There were strong significant effects of stress on the total assemblage, plant (but not animal) richness, total plant and animal cover, and cover of the most common taxa. Unstressed bricks had high plant richness, high animal and plant cover, and high cover of the oyster Crassostrea virginica, the alien algae Gracilaria vermiculophylla and Codium fragile, the alga Agardhiella subulata, and high to medium cover of the opportunistic algae Ulva curvata and Enteromorpha spp. In comparison, sediment-stressed bricks had low plant richness, low animal and plant cover, and low cover of C. virginica, G. vermiculophylla, C. fragile, A. subulata, U. curvata and Enteromorpha spp. Similarly, algae-stressed bricks also had low cover of animals, C. virginica, G. vermiculophylla, C. fragile, and A. subulata, but intermediate plant richness and plant cover and high cover of U. curvata and Enteromorpha spp. Although reef position caused significant multivariate results, this factor was clearly less important than the stress factor. Our study shows that accumulations of sediments and drift algae have an adverse impact on sessile temperate reef organisms, reducing richness and abundance, but favoring a few small opportunistic taxa. As the reef-generating oysters themselves performed poorly under these stressors, the long-term impact of the causes of these stressors, eutrophication and urbanization, is likely to be diminished reefs with cascading adverse effects on sessile reef organisms.     

In situ stalk growth rates in tropical western Atlantic sea lilies (Echinodermata: Crinoidea)

Despite their greater familiarity as fossils, stalked crinoids, or sea lilies, remain important components of hard-substrate assemblages at bathyal depths in both tropical western Atlantic and Pacific regions. To determine stalk growth rates, specimens collected along the western margin of Little Bahama Bank using the submersibles Johnson Sea Link I and II were measured, tagged with color-coded cable ties, returned to the sea floor either to the site at which they were collected or to different habitats or depths, and recovered several months to over a year later. This paper examines stalk growth rates in Neocrinus decorus, Cenocrinus asterius, and the subspecies of Endoxocrinus parrae (E. parrae parrae, E. parrae prionodes and E. parrae carolinae) and their variations relative to depth and current flow. Studies were carried out at three different depth sites: 249 m, 372-435 m and 540-576 m. N. decorus produces substantially more stalk per year than any subspecies of E. parrae or C. asterius (10-17 cm y^− 1 versus no more than 3.6 cm y^− 1) but contributes no more than twice as much skeletal volume to the sediment because of its more slender stalk. To examine environmental control of growth, E. parrae parrae was transplanted beyond its local depth range to the habitat at which deeper-dwelling E. parrae prionodes occurs (572 m). E. parrae parrae grew at 0.6 ± 0.4 cm y^− 1 (n = 6) here, significantly more slowly than in 404 m and more slowly than E. parrae prionodes (2.1 ± 0.6 cm y^− 1; n = 4), supporting the hypothesis that these two morphs exhibit distinct growth strategies. Growth rates for E. parrae parrae and N. decorus do not differ significantly between adjacent high and lower current-velocity habitats at the same depth, although both exhibit significantly shorter stalk lengths and crown elevations on raised topography apparently subject to stronger flow.     

Steinernema ichnusae sp. n. (Nematoda: Steinernematidae) a new entomopathogenic nematode from Sardinia Island (Italy)

A new Steinernema species was isolated from three different sandy soil samples along the Platamona Beach, in the north-west coast of Sardinia Island (Italy). This new species is characterized by the following morphological characters: infective third-stage juvenile with a body length of 866 ± 61 (767-969) μm, distance from head to excretory pore of 63 ± 2.7 (59-68) μm, tail length of 81 ± 3.2 (76-89) μm, ratio E (%) 77 ± 3.4 (68-83); male tail with a mucron only in the second generation, spicule length of 66 ± 1.4 (64-67) μm and gubernaculum length of 44 ± 1.4 (43-46) μm in the first generation male; female of first generation with a slight vulval protrusion and ratio D (%) of 53 ± 4.0 (47-63). The new species differs distinctly from the related species (S. feltiae, S. kraussei, S. litorale, S. oregonense and S. cholashanense) in some morphometric values such as percentage of hyaline portion, ratios of gubernaculum/spicule length, spicule head length/width. The DNA analyses of the internal transcribed spacers and D2D3 regions show that the studied nematode isolates are a new species. Cross hybridisation tests with S. feltiae, S. kraussei, S. litorale, S. weiseri and S. oregonense showed that these species were reproductively isolated.     

The spatial and vertical distribution of living (stained) benthic foraminifera from a tropical,intertidal environment,north Queensland,Australia

We investigated the distribution of living (stained) benthic foraminifera across a tropical, intertidal shoreline adjacent to Cocoa Creek, Queensland, Australia for the purpose of better understanding the nature of test production and ultimately fossil assemblage development within such environments. Short cores (up to 1 m) were collected during the wet and dry season, along an elevational gradient comprising non-vegetated intertidal mudflat and higher-intertidal mangrove forest environments. The distribution of stained specimens can be broadly delineated into assemblages characterising ‘upper mangrove’ (2.64–2.91 m above Lowest Astronomical Tide (LAT)) and ‘low mangrove-mudflat’ (1.62–2.18 m above LAT) environments. Agglutinated species were generally limited to upper mangrove stations. Calcareous species occurred within all of the intertidal environments examined but differ in their composition between upper and lower intertidal settings. Upper mangrove faunas were characterised by the agglutinated species Arenoparrella mexicana, Haplophragmoides wilberti, Miliammina fusca, Miliammina obliqua and Trochammina inflata and the calcareous species Helenina anderseni. Live (stained) assemblages at lower intertidal elevations were dominated by the calcareous species Ammonia aoteana, as well as Rosalina spp., Elphidium oceanicum, Triloculina oblonga, Ammonia pustulosa and Shackoinella globosa.     

Biometry of Upper Cretaceous (Cenomanian–Maastrichtian) coccoliths – a record of long-term stability and interspecies size shifts

Biometric measurements of Mesozoic coccoliths (coccolith length and width) have been used in short-term biostratigraphic, taxonomic and palaeoecologic studies, but until now, not over longer time scales. Here, we present a long time-series study (∼ 30 million years) for the Upper Cretaceous, which aims to identify broad trends in coccolith size and to understand the factors governing coccolith size change over long time scales. We have generated biometric data for the dominant Upper Cretaceous coccolith groups, Broinsonia/Arkhangelskiella, Prediscosphaera, Retecapsa and Watznaueria, from 36 Cenomanian–Maastrichtian (100.5–66 Ma) samples from Goban Spur in the northeast Atlantic (DSDP Site 549). These data show that the coccolith sizes within Prediscosphaera, Retecapsa and Watznaueria were relatively stable through the Late Cretaceous, with mean size variation less than 0.7 μm. Within the Broinsonia/Arkhangelskiella group there was more pronounced variation, with a mean size increase from ∼ 6 μm in the Cenomanian to ∼ 10 μm in the Campanian. This significant change in mean size was largely driven by evolutionary turnover (species origination and extinctions), and, in particular, the appearance of larger species/subspecies (Broinsonia parca parca, Broinsonia parca constricta, Arkhangelskiella cymbiformis) in the early Campanian, replacing smaller species, such as Broinsonia signata and Broinsonia enormis. Shorter-term size fluctuations within Broinsonia/Arkhangelskiella, observed across the Late Cenomanian–Turonian and Late Campanian–Maastrichtian intervals, may, however, reflect changing palaeoenvironmental conditions, such as sea surface temperature and nutrient availability.     

Effects of lime-induced inorganic carbon reduction on the growth of three aquatic macrophyte species

Lime application to aquatic systems may be an effective means of stressing macrophyte growth and promoting changes in species assemblage by inducing temporary dissolved inorganic carbon (DIC) limitation of productivity. Shoot and root growth response to lime (as Ca(OH)₂) application was investigated for three macrophyte species (Elodea canadensis, Stuckenia pectinata, and Vallisneria americana) grown in experimental outdoor mesocosms. Lime was applied to mesocosms at three treatment levels to maintain pH for 1 week at 9.8–10.0 (1.64 mM), 10.3–10.5 (at the bicarbonate–carbonate equivalence point; 3.00 mM), and 10.8–11.0 (4.34 mM). pH recovered to control levels in all treated mesocosms 20 days after lime application. After treatment, HCO₃⁻ and DIC declined by 66, 93, and 93% and 60, 89, and 87%, respectively, versus increasing lime application. Concentrations remained lower in treated mesocosms versus the control throughout post-treatment. Differential growth response was observed in the 1.64 and 3.00 mM treatments, suggesting species-specific tolerances to both DIC concentration and form. V. americana was most sensitive to lime as the 1.64 mM treatment resulted in 54% shoot growth suppression versus the control and shoot plus root biomass loss in the 3.00 and 4.34 mM treatments. S. pectinata and E. canadensis exhibited net shoot and root growth (although significantly lower than controls) in both the 1.64 and 3.00 mM treatments and complete growth suppression in the 4.34 mM treatment. Selective control and shifts in species assemblage may be possible by adjusting lime concentration in relation to compensation point and needs to be investigated under field conditions.     

Macroinvertebrate assemblages in Pennsylvania (U.S.A.) springs

Five distinct macroinvertebrate assemblages were identified using cluster analysis of the rank-order abundances of 13 orders in 15 freshwater springs of central Pennsylvania, U.S.A. A principal components analysis of 20 environmental factors indicated that an insect-dominated assemblage occurred in low pH, softwater sandstone springs and an amphipod-dominated assemblage was associated with medium to hardwater springs with a silt to gravel substratum. Three other assemblages were found in hardwater limestone springs: the peracaridan-hydrobiid assemblage was characterized by dense macrophyte beds and a silt to cobble substratum, the peracaridan-triclad-glossosomatid assemblage by a rubbly, gravel-cobble substratum and relatively high discharge, and the peracaridan-hydrobiid-oligochaete assemblage by a silty substratum and dense mats of green algae.Most of the common macroinvertebrate species were associated with specific physical, chemical, and (or) vegetational factors, but abundance associations between species pairs were generally lacking. We infer that assemblages are primarily determined by the match between the environmental mosaic of individual springs and the ecological requirements of the available species, rather than by strong interspecific interactions.Species-environment associations were assessed in an additional study of five closely neighboring springs in which some environmental variables of the wider study were nearly constant.     

Nutrients and antinutrient constituents of Amaranthus caudatus L. Cultivated on different soils

This study investigated variations in the concentration of nutrients, antinutrients and mineral content of Amaranthus caudatus harvested from different soil types at various stages of maturity. Four out the five soils namely; sandy clay loam, silty clay loam, clayey loam and loam were experimentally formulated from primary particles of silt, clay and sand in line with the United State Department of Agriculture’s (USDA) soil triangle protocol. The unfractionated soil was used as the control. After harvesting at pre-flowering (61 days after planting), flowering (71 days after planting) and post-flowering (91 days after planting) stages, nutrient and antinutrient analyses were carried out following Association of Official Analytical Chemists (AOAC) and other referenced methods while the Inductively Coupled Plasma- Optical Emission Spectrometer was used to determine mineral compositions of the plant samples. The results of the study revealed that particle size and physicochemical properties of the soil influenced the number of minerals deposited in plant tissues. It was further observed that the nutritional properties of the plant change as plant ages. For an optimal yield of vitamins A and E, clayey loam proved to be the best soil particularly when A. caudatus is harvested before flowering but for vitamin C, sandy clayey loam yielded the highest output at the same stage. Similarly, clayey loam and loam soils yielded the highest proximate compositions at flowering and pre-flowering; however, mineral elements (micro and macro) were highest in control and loam soils.     

Palaeoenvironments and palaeoclimates of the Quaternary molluscan faunas from the coastal area of Bahía Vera-Camarones (Chubut, Patagonia)

Quaternary molluscs are useful tools as indicators of environmental and climatic changes through time. The Patagonian coastal area exhibits a series of Quaternary marine terraces (MT) at various elevations with a well-preserved molluscan fauna. The assemblages from Mid- to Late Pleistocene and Holocene raised beach deposits exposed between Bahía Vera and Bahía Camarones (44.2°S-45°S) were examined, and systematic, palaeoecological and palaeobiogeographical aspects were reviewed and updated in terms of interpretation of the littoral area and biotic responses to climate changes. Collections at 10 fossiliferous localities and four modern sites of the adjacent nearshore show that molluscs (41 taxa: 24 gastropods and 17 bivalves) represent 91% of the total faunal content. Identification of the typical taxa for at least four sea-level highstands was based on the occurrence, relative abundance, species richness, and diversity indices (Margaleff's; Sannon Weaver's). Variations between terraces MTIII (Camarones, higher than + 30 m, probably ca. 400 ka), IV (Punta Pescadero and Camarones,+ 22-29 m, 178-239 ka), V (Bahía Vera, Punta Pescadero, Camarones,+ 16-18 m, 92-135 ka) and VI (Punta Lobería, Punta Pescadero, Camarones,+ 6-12 m, 2.5-8 ka) add to a better understanding of palaeoenvironments and palaeoclimates linked to sea-level highstands since MOIS11. Their original habitat was typical of rocky-shore, high-energy and euhaline waters, similar to the modern conditions of adjacent benthic communities. The most characteristic taxa are: Patinigera deaurata (Gm.), Fissurella spp., Crepidula protea d'Orb., C. aculeata (Gm.), C. cf. unguiformis Lam., Natica isabelleana d'Orb., Trochita pileus (Lam.), Buccinanops spp., Pareuthria plumbea (Philippi), Acanthina monodon (Pallas) and Trophon spp. (Gastropoda); Brachidontes purpuratus (Lam.), Protothaca antiqua (King), Clausinella gayi (Hupé), Mactra aff. patagonica (d'Orb.) and Ostrea tehuelcha (Feruglio). New records in this area for the Late Pleistocene are: C. aculeata (Gm.), C. onyx Sow., C. protea d'Orb., T. patagonica (d'Orb.), N. isabelleana (d'Orb.), B. rodriguezi (d'Orb.), A. tehuelchus (d'Orb.) and C. gayi (Hupé). Ostrea tehuelcha d'Orb. became extinct and Tegula atra (Lesson), N. isabelleana (d'Orb.), B. rodriguezi (d'Orb.), C. patagonica (d'Orb.) and D. vilardeboana (d'Orb.) migrated into the area. Exclusive for MTIII (MOIS11) are Pectinidae indet., Ostrea tehuelcha and Mactra cf. patagonica d'Orb. which, together with other taxa (i.e., Corbula patagonica, Diplodonta vilardeboana), suggest warmer sea surface temperature (SST) than at present. Typical of MTIV (MOIS7) are T. atra, biggest P. antiqua (King), and Veneroida indet. The assemblage from MTV (MOIS5c?, 5a?), T. atra, T. patagonica, C. dilatata Lamk., M. edulis Linn., B. purpuratus, P. antiqua, and P. rostratus (Koch), is not indicative of a climatic optimum and thus of the Last Interglacial maximum highstand (MOIS5e). MTVI (MOIS1) is characterized by B. cf. purpuratus, N. (Patinigera) magellanica (Gm.), N. (P.) deaurata (Gm.), Trophon geversianus (Pallas), B. purpuratus, and Aulacomya atra (Molina). N. delicatissima (Strebel), Chlamys sp., Panopea abbreviata, and Lyonsia sp. exclusively occur in the modern nearshore. According to the global isotope curve, MOIS5e highstand (125 ka BP) was the warmest since the Mid-Pleistocene. The innermost MTIII assemblage provides an opportunity to hypothesize that along the eastern coast of South America the corresponding highstand (probably MOIS11, ca. 400 ka BP ?) belongs to the warmest of the Pleistocene interglacials preserved, as proposed earlier for the Chilean coast (Ortlieb et al., 1996). This assemblage could be correlated with the Belgranense of the Bonaerensian littoral. The Holocene Climatic Optimum (5-8 ka) is confirmed to have influenced the littoral biota. A slightly higher SST (1-3 °C) implied atmospheric and palaeoceanographic changes, with a southwards shift of the dominant warm (Brazilian) and cool (Malvinas = Falkland) currents along the SWAtlantic and, consequently, of the Argentinean and Magellanean marine zoogeographical provinces.     

Diversity of Bacteria and Archaea from a landfill in Chandigarh,India as revealed by culture-dependent and culture-independent molecular approaches

The bacterial community structure of a municipal landfill in Chandigarh, India was analysed by culture-dependent as well as culture-independent molecular approaches, and archaeal structure by the latter method. Samples were collected in two phases from the surface and a depth of 0.91 m in June, 2004 and from 0.91 m, 1.52 m and 1.68 m in May, 2005. After serial dilutions, samples were plated onto tryptic soy agar (TSA), plate count agar (PCA), tryptic soy broth agar (TSBA) and TSBA100 (TSBA diluted 100 times and solidified with agarose), and incubated aerobically at 30 °C. The number of bacteria (CFU) on different media ranged between 9.4 × 10⁵ g⁻¹ (on PCA) and 1.9 × 10⁷ g⁻¹ (on TSA) (wet weight). The numbers of bacteria enumerated from plates incubated anaerobically (anaerobic agar and reinforced clostridial agar) were 2.1 × 10⁷ and 1.7 × 10⁶ g⁻¹, respectively. Of the 468 isolated and purified bacteria (183 in the first phase and 285 in the second phase), 135 were characterised using phenotypic characteristics as well as 16S rRNA gene sequence analysis. It was found that members of the phylum Firmicutes were overwhelmingly predominant (86.6%) in the landfill, followed by Actinobacteria (9.6%) and Proteobacteria (3.7%). Among the Firmicutes, at least 17 species from the single genus Bacillus were the most abundant inhabitants of the landfill. Detailed polyphasic characterisation of many of these isolates led to the discovery of a novel genus Paenisporosarcina (and the species P. quisquiliarum), a novel species of Microbacterium, M. immunditiarum, and reclassification of Sporosarcina macmurdoensis, Pelagibacillus goriensis, Bacillus silvestris, Bacillus insolitus, Bacillus psychrotolerans and Bacillus psychrodurans. Culture-independent analysis of two 16S rRNA gene libraries also revealed that the phylum Firmicutes was the predominant group in this community. The diversity of Archaea was found to be limited mainly to members of two orders: Methanosarcinales and Methanomicrobiales of the phylum Euryarchaeota. When these results were compared to those reported earlier on similar studies, it was found that irrespective of differences in composition of municipal solid waste (especially compostable organic matter and paper) and climate, the members of bacterial and archaeal communities in landfills of many countries remained broadly similar.     

Biomass and primary production of a 8–11 m depth meadow versus <3 m depth meadows of the seagrass Cymodocea nodosa (Ucria) Ascherson

Current knowledge about the abundance, growth, and primary production of the seagrass Cymodocea nodosa (Ucria) Ascherson is biased towards shallow (depth <3 m) meadows although this species also forms extensive meadows at larger depths along the coastlines. The biomass and primary production of a C. nodosa meadow located at a depth of 8–11 m was estimated at the time of maximum annual vegetative development (summer) using reconstruction techniques, and compared with those available from shallow meadows of this species. A depth-referenced data base of values at the time of maximum annual development was compiled to that end. The vegetative development of C. nodosa at 8–11 m depth was not different from that achieved by shallow (depth <3 m) meadows of this species. Only shoot density, which decreased from 1637 to 605 shoots m⁻², and the annual rate of elongation of the horizontal rhizome, which increased from 23 to 71 cm apex⁻¹ year⁻¹, were different as depth increased from <3 to 8–11 m. Depth was a poor predictor of the vegetative development and primary production of C. nodosa. The biomass of rhizomes and roots decreased with depth (g DW m⁻² = 480 (±53, S.E.) − 32 (±15, S.E.) depth (in m); R² = 0.12, F = 4.65, d.f. = 35, P = 0.0381) which made total biomass of the meadow to show a trend of decrease with depth but the variance of biomass data explained by depth was low. The annual rate of elongation of the horizontal rhizome showed a significant positive relationship with depth (cm apex⁻¹ year⁻¹ = 18 (±5.1, S.E.) + 5.0 (±1.33, S.E.) depth (in m); R² = 0.50, F = 14.07, d.f. = 14, P = 0.0021). As shoot size and growth did not change significantly with depth, the reduction of shoot density should drive any changes of biomass and productivity of C. nodosa as depth increases. The processes by which this reduction of C. nodosa abundance with depth occur remain to be elucidated.