Seasonal migration promoting assortative mating in Littorina brevicula on a boulder shore in Japan

Littorina brevicula Philippi is one of the most common snails found in the upper intertidal zone of Japan. In Amakusa, some of the population of L. brevicula migrate to the lower zone in the winter, while the rest stay in the upper zone. Thus, during the winter, which is its reproductive season, the population of L. brevicula divides into two sub-populations. This leads to a hypothesis that the migration pattern in winter is genetically controlled and this behavioural dimorphism is maintained by reproductive isolation between the two sub-populations. In order to test this hypothesis, the following three points were investigated: (1) whether the same snails migrate in a similar way every winter, (2) whether there is a significant tidal level preference in snails, and (3) whether reproductive isolation occurs between the two sub-populations. The results showed (1) the migration behaviour of each snail was consistent over two successive winters, i.e. the same group of snails migrated downward every winter and the same group of snails stayed in the upper zone every winter, (2) transplanted snails moved toward the original zones where they were caught, suggesting that the snails actively selected their tidal zone in winter, and (3) most of the snails copulated within each sub-population. Therefore, reproductive isolation between the two sub-populations was considered to be established to some extent by the dimorphic migration behaviour. In conclusion, the migratory behaviour of L. brevicula is determined separately for each individual and might be genetically controlled, and the behavioural dimorphism may be maintained by partial reproductive isolation between the two sub-populations.     

Evolutionary Consequences of Dispersal Ability in Cactus-feeding Insects

Although gene flow is an important determinant of evolutionary change, the role of ecological factors such as specialization in determining migration and gene flow has rarely been explored empirically. To examine the consequences of dispersal ability and habitat patchiness on gene flow, migration rates were compared in three cactophagous longhorn beetles using coalescent analyses of mtDNA sequences. Analyses of covariance were used to identify the roles of dispersal ability and habitat distribution in determining migration patterns. Dispersal ability was a highly significant predictor of gene flow (p< 0.001), and was more important than any other factor. These findings predict that dispersal ability may be an import factor shaping both microevolutionary and macroevolutionary patterns; this prediction is borne out by comparisons of species diversity in cactus-feeding groups.     

The effect of volcanism on postglacial migration and seed dispersal. A case study in southern South America

During the Quaternary, southern South American temperate forests were confined to small and isolated refugia. Recolonization could be related not only with location of refugia but also with postglacial phenomena like volcanism, which could have interrupted the expansion of the forests. The aim of this study was to analyze the local effect of volcanism during the postglacial migration of Nothofagus nervosa in a particular region of Argentina were convergence of two migratory routes was suggested. The main question is whether admixture occurred or not and if the current populations are connected by pollen or seed gene flow. Two populations separated by a 3-km-width lava flow were sampled. Buds from 30 individuals of each of the two populations and from a total of 142 juveniles were analyzed. Genetic variation was detected through maternally inherited chloroplast deoxyribonucleic acid (cpDNA; polymerase chain reaction restriction fragment length polymorphisms of two fragments) and nuclear markers like isozymes (six loci) and simple sequence repeats (three loci). Population genetic parameters were estimated and the existence of a genetic structure was tested with an analysis of molecular variance. Historical gene flow was estimated through the indirect method of the genetic differentiation (F _ST). Chloroplast DNA revealed a total genetic differentiation between the two populations indicating completely isolation respecting seed gene flow. On the contrary, the degree of genetic differentiation for the nuclear markers was significantly lower, and moderate levels of historical gene flow through pollen were inferred. The results suggest that in this area, volcanism has played an important local role during the expansion of N. nervosa maintaining these two populations separated. Communicated by A. Kremer     

Pervasive migration across rainforest and sandy coastal plain Aechmea nudicaulis (Bromeliaceae) populations despite contrasting environmental conditions

Understanding the colonization of extreme marginal habitats and the relative roles of space and environment in maintaining peripheral populations remains challenging. Here, we leverage a system of pairs of rainforest and sandy coastal plain communities that allow us to decouple spatial and environmental effects in the population structure and migration rates of the bromeliad Aechmea nudicaulis. Structure and gene flow between populations were estimated from Bayesian clustering and coalescent‐based migration models applied to chloroplast sequence and nuclear microsatellite data. Contrary to our initial expectation, the sharp environmental gradient between rainforest and sandy plains does not seem to have affected the colonization and migration dynamics in A. nudicaulis. Our analyses uncover pervasive gene flow between neighbouring habitats in both chloroplast and nuclear data despite the striking differences in environmental conditions. This result is consistent with a scenario of repeated colonization of the sandy coastal plains from forest populations through seed dispersal, as well as the maintenance of gene flow between habitats through pollination. We also recovered a broad north/south population structure that has been found in other Atlantic rainforest groups and possibly reflects older phylogeographic dynamics.     

Restricted gene flow in fragmented populations of a wind-pollinated tree

Fragmentation of natural populations can have negative effects at the genetic level, thus threatening their evolutionary potential. Many of the negative genetic impacts of population fragmentation can be ameliorated by gene flow and it has been suggested that in wind-pollinated tree species, high or even increased levels of gene flow are a feature of fragmented populations, although several studies have disputed this. We have used a combination of nuclear microsatellites and allele-specific PCR (AS-PCR) analysis of chloroplast single nucleotide polymorphisms (SNPs) to examine the levels and patterns of genetic diversity and population differentiation in fragmented populations of juniper (Juniperus communis) in Ireland and inform conservation programs for the species. Significant population differentiation was found for both chloroplast and nuclear markers, indicating restricted gene flow, particularly over larger geographic scales. For conservation purposes, the existence of genetically distinct clusters and geographically localised chloroplast haplotypes suggests that the concept of provenance should be taken into account when formulating augmentation or reintroduction strategies. Furthermore, the potential lack of seed dispersal and seedling establishment means that ex-situ approaches to seed and seedling management may have to be considered.     

Influence of sugar beet breeding on populations of Beta vulgaris ssp. maritima in Italy

Abstract. It is highly probable that transgenic cultivars of sugar beet may influence wild beets in the seed-production-area of northern Italy. For this reason a survey of the local wild beet populations and their habitat characteristics was conducted in 1994/1995, i.e. before transgenic beets and their off spring could have become established. Wild beets (Beta vulgaris ssp. maritima) were found at 21 locations between Trieste and Cesenatico, as part of the natural littoral vegetation classified as Atriplicetum tatarici (Cakiletea maritimae) and Crithmetum (Crithmo-Staticetea). The analysis of phenotypic attributes leads to a division into three different sub-populations. Greenhouse studies on the morphology and life-cycle attributes demonstrated actual gene flow between conventional seed beet and the examined wild beet population.     

Genetic diversity of Darnel (Lolium temulentum L.) in Malo, Ethiopia depends on traditional farming systems

Genetic Diversity of Darnel (Lolium temulentum L.) in Malo, Ethiopia Depends on Traditional Farming Systems. Economic Botany 58(4):568–577, 2004. Darnel (Lolium temulentum L.) is a mimic weed associated with wheat and barley cultivation. Mimic weeds have evolved along with cultivated crops. Human impact on the genetic diversity of agricultural weeds was elucidated using darnel as a model. Three strains in each field in Gaitza village, Malo region, Ethiopia were randomly sampled, and the genetic composition of 120 samples was analyzed using RAPD analysis. Genetic diversity and distances were calculated using Nei’s analysis, and cluster analysis was performed. These results indicated the occurrence of seed migration among the fields and a high genetic diversity of darnel in this region. Crop seed exchange and contamination of crop seeds with darnel seeds lead to the unintended artificial gene flow of darnel. Because darnel seeds and seedlings resemble their associated crop seeds and seedlings, traditional methods of crop cultivation have the unintended consequence of conserving the genetic diversity of darnel.     

Inbreeding depression and heterosis in a subdivided population: influence of the mating system

We investigate the joint effects of gene flow and selfing on the level of inbreeding depression, heterosis and genetic load in a subdivided population at equilibrium. Low gene flow reduces inbreeding depression and substantially increases heterosis. However, in highly self-fertilizing populations, inbreeding depression is independent of the amount of gene flow. When migration occurs via pollen, consanguinity of the reproductive system could have a negative influence on subpopulation persistence, in contrast to the case of isolated populations. However, with only seed migration, genetic load and heterosis depend mildly on the mating system. From an evolutionary point of view, we reach two main conclusions: first, outcrossing is selected for if gene flow is low; second, intermediate levels of gene flow could promote mixed mating systems, especially when migration occurs through pollen.     

Realized gene flow within mixed stands of Quercus robur L. and Q. petraea (Matt.) L. revealed at the stage of naturally established seedling

The estimates of contemporary gene flow assessed based on naturally established seedlings provide information much needed for understanding the abilities of forest tree populations to persist under global changes through migration and/or adaptation facilitated by gene exchange among populations. Here, we investigated pollen‐ and seed‐mediated gene flow in two mixed‐oak forest stands (consisting of Quercus robur L. and Q. petraea [Matt.] Liebl.). The gene flow parameters were estimated based on microsatellite multilocus genotypes of seedlings and adults and their spatial locations within the sample plots using models that attempt to reconstruct the genealogy of the seedling cohorts. Pollen and seed dispersal were modelled using the standard seedling neighbourhood model and a modification—the 2‐component seedling neighbourhood model, with the later allowing separation of the dispersal process into local and long‐distance components. The 2‐component model fitted the data substantially better than the standard model and provided estimates of mean seed and pollen dispersal distances accounting for long‐distance propagule dispersal. The mean distance of effective pollen dispersal was found to be 298 and 463 m, depending on the stand, while the mean distance of effective seed dispersal was only 8.8 and 15.6 m, which is consistent with wind pollination and primarily seed dispersal by gravity in Quercus. Some differences observed between the two stands could be attributed to the differences in the stand structure of the adult populations and the existing understory vegetation. Such a mixture of relatively limited seed dispersal with occasional long distance gene flow seems to be an efficient strategy for colonizing new habitats with subsequent local adaptation, while maintaining genetic diversity within populations.     

Population genetic suggestions to offset the extinction ratchet in the endangered Canarian endemic Atractylis preauxiana (Asteraceae)

We examined the levels and apportionment of genetic variation of the 11 known subpopulations of Atractylis preauxiana at 95 RAPD loci to help streamline a conservation strategy for this Canarian endemic taxon, which is in a critical situation because of the constant exposure of plants to intensive, uncontrolled anthropic action in the last few decades. Our results revealed low genetic variation levels that match with the general picture of demographic and habitat degradation that this taxon is undergoing. Although geographic isolation between Tenerife and Gran Canaria is an effective barrier to gene flow, genetic heterogeneity within islands is also substantial, plausibly due to the negative impact of fragmentation on genetic variation. Our genetic results, together with declining population sizes, poor seedling survival, and recent population extinctions, compellingly indicate that A. preauxiana is undergoing an extinction ratchet, whereby every further local extinction will add up to the probability of total species’ extinction. Our genetic results suggest that mitigating the deleterious consequences of this effect entails urgent mixed reinforcements of all sub-populations with sub-populations from the same island and urgent translocation of the two sub-populations from Tenerife that are doomed to extinction to ecologically suitable areas, together with seed collection and preservation in a convenient ex situ banking facility.     

Gene flow inferred from seed dispersal and pollinator behaviour compared to DNA analysis of restriction site variation in a patchy population of Lotus corniculatus L.

Summary Gene flow was investigated in a natural population of Lotus corniculatus L. (Fabaceae) using a combination of pollen and seed dispersal studies and a recombinant DNA technique. The population is spatially heterogeneous and grows with Empetrum nigrum. L. corniculatus is pollinated by the pollen-collecting bumblebee Bombus lapidarius L. Most pollinator flights occurred within patches, as bees usually visit nearest-neighbour plants, show no marked directionality, and forage mostly within patches. Gene flow by seeds is also limited, reinforcing the pattern of gene flow within patches. However, 2.6% of pollinator flights are between patches and considerable pollen carryover also occurs. Thus, gene flow between patches is potentially sufficient to retard or prevent genetic differentiation in spite of the patchy sub-structuring of the population. A sub-set of the population was analysed for restriction fragment length polymorphisms (RFLPs) to document the actual gene flow pattern of the population. The DNA analysis revealed significant levels of genetic differentiation between the patches. The level of gene flow that can be inferred from the distribution of genetic variation is surprisingly restricted, as compared to gene flow inferred from pollinator behaviour, and emphasizes that stochastic processes like genetic drift and founder effects may have a strong impact on the prevailing genetic structure.     

Variation patterns of parthenogenetic plants derived from “unreduced” embryo-sacs of Solanum tuberosum subspecies andigena (Juz. et Buk.) Hawkes

Summary Parthenogenetic seed induction was performed on one clone of Solanum tuberosum subspecies andigena (2n=4x=48) using S. phureja (2n=2x=24) marker inducer clones. The parthenogenetic population when grown was found to contain both diploid and tetraploid individuals presumably arising from reduced and unreduced gametes, respectively. Variation patterns in the diploid and tetraploid sub-populations, as well as a population obtained by selfing the parental clone, were compared to try and elucidate the origin of the tetraploid parthenotes. From the results of this one generation it appeared that the tetraploid parthenogenetic plants had been produced by a mechanism equivalent to second division restitution (SDR).     

Rapid flow cytometry – Nile red assessment of PHA cellular content and heterogeneity in cultures of Pseudomonas aeruginosa 47T2 (NCIB 40044) grown in waste frying oil

The accumulation of cytoplasmic polyhydroxyalkanoates (PHAs) and the heterogeneity of bacterial populations were analysed by flow cytometry and SYTO-13 and Nile red staining in rhamnolipid-producing Pseudomonas aeruginosa cultures grown in waste frying oil as carbon source. A combination of SYTO-13 and Nile red fluorescence with cytometric forward and side scatter values may allow increases in the final production of polyhydroxyalkanoates (PHA) by two basic mechanisms: (i) rapid assessment of polyhydroxyalkanoate content and (ii) definition of flow cytometric cell sorting protocols to select high polyhydroxyalkanoate (PHA)-producing strains. We report a rapid (less than 30 min) flow cytometric assessment of PHAs in Pseudomonas aeruginosa 47T2 following Nile red staining: (i) to estimate cellular PHAs content; (ii) to study heterogeneity of the batch cultures producing PHAs and (iii) to establish the basis for sorting sub-populations with a high capacity to accumulate PHAs.     

The transfer of a powdery mildew resistance gene from Hordeum bulbosum L to barley (H. vulgare L.) chromosome 2 (2I)

Hordeum bulbosum L. is a source of disease resistance genes that would be worthwhile transferring to barley (H. vulgare L.). To achieve this objective, selfed seed from a tetraploid H. vulgare x H. bulbosum hybrid was irradiated. Subsequently, a powdery mildew-resistant selection of barley phenotype (81882/83) was identified among field-grown progeny. Using molecular analyses, we have established that the H. bulbosum DNA containing the powdery mildew resistance gene had been introgressed into 81882/83 and is located on chromosome 2 (2I). Resistant plants have been backcrossed to barley to remove the adverse effects of a linked factor conditioning triploid seed formation, but there remains an association between powdery mildew resistance and non-pathogenic necrotic leaf blotching. The dominant resistance gene is allelic to a gene transferred from H. bulbosum by co-workers in Germany, but non-allelic to all other known powdery mildew resistance genes in barley. We propose Mlhb as a gene symbol for this resistance.     

Comparative Effects of Pollen and Seed Migration on the Cytonuclear Structure of Plant Populations. II. Paternal Cytoplasmic Inheritance

We continue our study of the effects of pollen and seed migration on the cytonuclear structure of mixed-mating plant populations by analyzing two deterministic continent-island models under the critical assumption of paternal cytoplasmic inheritance. The major results of this study that contrast with our previous conclusions based on maternal cytoplasmic inheritance are (i) pollen gene flow can significantly affect the cytonuclear structure of the island population, and in particular can help to generate cytonuclear disequilibria that greatly exceed the magnitude of those that would be produced by seed migration or mixed mating alone; (ii) with simultaneous pollen and seed migration, nonzero cytonuclear disequilibria will be maintained not only when there is disequilibrium in the immigrant pollen or seeds, but also through a variety of intermigrant admixture effects when the two pools of immigrants differ appropriately in their cytonuclear compositions; (iii) either immigrant pollen or immigrant seeds can generate disequilibria de novo in populations with initially random cytonuclear associations, but pollen migration alone generally produces lower levels of disequilibrium than does comparable seed migration, especially at high levels of self-fertilization when the overall fraction of immigrant pollen is low; (iv) the equilibrium state of the island population will be influenced by the rate of pollen gene flow whenever there is either allelic disequilibrium in the immigrant pollen or simultaneous seed migration coupled with different cytoplasmic or nuclear allele frequencies in immigrant pollen and seeds or nonzero allelic disequilibrium in either immigrant pool. The estimation of pollen migration should therefore be facilitated with paternal cytoplasmic inheritance relative to the case of maternal cytoplasmic inheritance. These basic conclusions hold whether the population is censused as seeds or as adults, but with simultaneous pollen and seed migration, the relationship between census time and the ability to detect nonrandom cytonuclear associations is complex. When migration is through pollen alone, however, the cytonuclear structure of the island population is independent of the life stage censused.     

Fine-scale genetic structure of an endangered population of the Mormon metalmark butterfly (<Emphasis Type="Italic">Apodemia mormo</Emphasis>) revealed using AFLPs

We investigated the genetic structure and diversity of an endangered Canadian population of the Mormon metalmark butterfly (Apodemia mormo) using, for the first time, amplified fragment length polymorphism (AFLP) markers generated from non-lethal samples of butterfly wing tissue. Based on 326 loci, our analyses show a high degree of spatial genetic structure within the population, indicating limited gene flow, despite a small geographic range (<20 km). We found that geographic distance, particularly measured along valley bottoms, restricts gene flow within this population. However, other potential barriers to movement and genetic exchange were also identified, in particular urban development. Overall, the population exhibited low levels of genetic diversity. Future management should focus on increasing gene flow between the most isolated sub-populations, and through urban areas, by preserving and restoring as many habitat patches as possible.     

喀斯特耐阴灌木淡黄金花茶的精细空间遗传结构与基因流

淡黄金花茶(Camelia flavida)是一种具有淡黄色花瓣的金花茶植物,为喀斯特典型的耐阴灌木。基于广西弄岗喀斯特季节性雨林15 hm2(300 m×500 m)监测样地,利用13对微卫星(SSR)标记,探讨喀斯特地貌对淡黄金花茶的精细空间遗传结构(SGS)、基因流和小尺度范围遗传分化的影响。结果表明:(1)淡黄金花茶在50 m距离内产生显著的SGS,在灌木类型和依赖种子传播的物种中具有中等程度的SGS强度(Sp=0.0248);(2)淡黄金花茶种子和花粉传播平均距离较短,分别为12.47 m和29.03 m,72.2%花粉和81.0%种子的传播距离均主要是在20 m内;(3)淡黄金花茶在小尺度范围(种群间距离1 km)的4个种群,甚至相距100 m的两个斑块产生了显著的遗传分化。喀斯特生境地貌对淡黄金花茶的基因流产生阻碍作用,从而导致淡黄金花茶在小尺度范围产生遗传分化。     

Measures of gene flow in the Columbian ground squirrel

From analyses of published data and a review of the literature, I studied indirect and direct measures of gene flow among populations of Columbian ground squirrels, Spermophilus columbianus. New analyses were used to examine an allozyme data set (seven polymorphic loci) that had been collected by Zammuto and Millar (1985a) from six populations of ground squirrels that were spread over 183 km. G-tests indicated significant variation in allele frequencies among populations, but F-statistics revealed relatively little population differentiation (average F _ST=0.026). F _ST values were used to estimate rates of gene flow indirectly and indicated fairly high rates of gene flow (average N _e m=13.5). Recorded dispersal distances of individual ground squirrels were fairly short (most<4 km, maximum recorded distance was 8.5 km), and the minimum distance between populations used to create the allozyme data set was about 25 km. Thus, direct dispersal among the populations in the allozyme data set was highly unlikely. Small genetically effective populations may have experienced high rates of migration over short distances (about 43% of adults in local populations were immigrants), however, resulting in homogeneous allele frequencies over the geographic range. This explanation provides an alternative to invoking gene flow in the recent past to explain discrepancies between dispersal distances in the field and homogenization of allele frequencies over large ranges, Mammalian species that have virtually complete dispersal of subadult males from the natal area might be expected to exhibit relatively high rates of gene flow, regardless of actual dispersal distances. Genetically effective populations may be much smaller than more extensive ecological populations and experience higher rates of gene flow.     

Spatial genetic structure and restricted gene flow in a functionally dioecious fig, <Emphasis Type="Italic">Ficus pumila</Emphasis> L. var. <Emphasis Type="Italic">pumila</Emphasis> (Moraceae)

The mutualism between fig plants and fig wasps has been recognized as one of the most specialized systems of symbiosis. Figs are pollinated by their highly specific pollinating fig wasps, and the pollinating fig wasps are raised within the syconia of figs. Recent studies indicated a difference between monoecious and dioecious figs in the dispersal range of pollinating wasps, which has potential consequences for gene flow. In this study, we detected the gene-flow pattern of the dioecious climbing fig, Ficus pumila L. var. pumila, at both local and regional scales. At the local scale, spatial autocorrelation analysis indicated strong genetic structure at short distances, a pattern of limited gene flow. This result was also supported by a high inbreeding coefficient (F _IS = 0.287) and significant substructuring (F _ST = 0.060; P < 0.001). Further analysis indicated that the effective gene dispersal range was 1,211 m, and the relative contribution of seed dispersal was smaller than that of pollen dispersal. The inferred effective range of pollen dispersal ranged from 989 to 1,712 m, while the effective seed dispersal range was less than 989 m. Lack of long-distance dispersal agents may explain the limited seed dispersal. The high density of receptive fig trees was the most likely explanation for limited pollen dispersal, and the position of syconia and relatively low wind speed beneath the canopy may contribute to this phenomenon. At the regional scale, significant negative correlations (kinship coefficient F _ij ranging from −0.038 to −0.071) existed in all comparisons between the studied population and other populations, and the assignment test grouped almost all individuals of the studied population into a distinct cluster. Asynchronous flowering on the regional scale, which provides a barrier for the pollinating wasps to fly from the studied population to the other populations, is probably responsible for the limited gene flow on the regional scale.     

A comparative assessment of purification techniques for mesophyll protoplasts of Brassica napus L.

The effects of three different general purification protocols have been assessed quantitatively using mesophyll protoplasts of Brassica napus. Within the initial sample two distinct sub-populations were determined. The methods used influenced the ratio of the vacuolated to chloroplastic type protoplast sub-populations. Overall recovery rates of the initial sample varied according to the method used from 38% to 27%, but the relative recovery of the sub-populations varied considerably with a purified ratio of between 1.0:0.78 to 1.0:7.0. Size distribution profiles of the initial and purified populations are also presented.