Large‐scale connectivity,cryptic population structure,and relatedness in Eastern Pacific Olive ridley sea turtles (Lepidochelys olivacea)

Endangered species are grouped into genetically discrete populations to direct conservation efforts. Mitochondrial control region (mtCR) haplotypes are used to elucidate deep divergences between populations, as compared to nuclear microsatellites that can detect recent structuring. When prior populations are unknown, it is useful to subject microsatellite data to clustering and/or ordination population inference. Olive ridley sea turtles (Lepidochelys olivacea) are the most abundant sea turtle, yet few studies have characterized olive ridley population structure. Recently, clustering results of olive ridleys in the Eastern Tropical Pacific Ocean suggested weak structuring (F_ST = 0.02) between Mexico and Central America. We analyzed mtCR haplotypes, new microsatellite genotypes from Costa Rica, and preexisting microsatellite genotypes from olive ridleys across the Eastern Tropical Pacific, to further explore population structuring in this region. We subjected inferred populations to multiple analyses to explore the mechanisms behind their structuring. We found 10 mtCR haplotypes from 60 turtles nesting at three sites in Costa Rica, but did not detect divergence between Costa Rican sites, or between Central America and Mexico. In Costa Rica, clustering suggested one population with no structuring, but ordination suggested four cryptic clusters with moderate structuring (F_ST = 0.08, p < .001). Across the Eastern Tropical Pacific, ordination suggested nine cryptic clusters with moderate structuring (F_ST = 0.103, p < .001) that largely corresponded to Mexican and Central American populations. All ordination clusters displayed significant internal relatedness relative to global relatedness (p < .001) and contained numerous sibling pairs. This suggests that broadly dispersed family lineages have proliferated in Eastern Tropical Pacific olive ridleys and corroborates previous work showing basin‐wide connectivity and shallow population structure in this region. The existence of broadly dispersed kin in Eastern Tropical Pacific olive ridleys has implications for management of olive ridleys in this region, and adds to our understanding of sea turtle ecology and life history, particularly in light of the natal‐homing paradigm.     

Indo-West Pacific species of the genus Stylopoma Levinsen, 1909 (Bryozoa: Cheilostomatida)

Twenty-one species of Stylopoma Levinsen, 1909 are described and illustrated with scanning electron micrographs. S. spongites (Pallas, 1766), the type species, is redescribed from the neotype specimen and included here for completeness. A neotype specimen for S. duboisii (Audouin, 1826) and a lectotype specimen for S. viride (Thornely, 1905) are designated and 14 new species of Stylopoma are described from Indo-West Pacific material in the Recent bryozoan collections of the Natural History Museum, London.     

Diversity and distribution of Laurencia sensu stricto (Rhodomelaceae,Rhodophyta) from the Mexican Pacific,including L. mutueae sp. nov.

The alpha diversity of Laurencia sensu stricto, as well as the majority of the other algal groups along the Mexican Pacific, was underestimated because very few studies had incorporated the use of molecular markers in taxonomic studies, which would allow a more realistic estimation of diversity, incluing new records and new species. The records of Laurencia s.s. for the Eastern Pacific (California, USA to Chile) currently represent 23% of its richness worldwide. In this work, we proposed an updated census of the currently recognized species of Laurencia s.s. for the Mexican Pacific. This checklist reported the occurrence of 22 species that represent 16% of the 137 species worldly recorded. We further included taxonomic remarks, type localities, and a detailed distribution for each species. In addition, we proposed a new species for this region, Laurencia mutueae sp. nov., based on morphological observation as well as phylogenetic analyses. The distribution in the Mexican Pacific revealed that the highest records of species were for the sub‐temperate region, while the localities along the Mexican tropical Pacific were poorly recorded. The scarcity of floristic affinities between the eastern and the western and central parts of the North Pacific Ocean was hypothesized to be a consequence of a strong isolation and hard barriers, such as the water masses between these regions.     

Integrative taxonomy of calcareous sponges (subclass Calcinea) from the Peruvian coast: morphology,molecules, and biogeography

Understanding of evolution and systematics of Calcarea (Porifera) have not yet met a corresponding increase in the knowledge of diversity and distribution of these sponges in several parts of the world. Peru is an emblematic example of this lack of taxonomic knowledge, as only three shallow‐water species of sponges have hitherto been reported from its 3000 km coast. With the aim of studying sponges of Peru, an integrative taxonomy approach (morphology, molecules, and biogeography) was used in order to achieve sound species identifications. The first findings of Peruvian calcareous sponges are presented here. Eight species are described in the subclass Calcinea, of which five are new to science. The retrieved biogeographical patterns are either locally endemic, widespread, or discontinuous over large areas. Clathrina antofagastensis was previously known from Chile, while C. aurea and Ernstia tetractina had been reported from the Atlantic (Brazil), and thus represent the first genetically confirmed tropical amphi‐American distributions of species not yet found on both sides of the Isthmus of Panama. Our results reveal a richer Tropical East Pacific sponge fauna than the Warm Temperate South‐Eastern Pacific one. © 2015 The Linnean Society of London     

Capitellidae (Annelida: Polychaeta) from the Pacific Coast of Costa Rica

Eleven species of Capitellidae (Annelida: Polychaeta) belonging to eight genera are reported from the subtidal and intertidal of the Pacific Coast of Costa Rica. Three species, Mediomastus ambiseta, M. californiensis and Notomastus hemipodus, are found in highest abundances and are widespread in subtidal and intertidal environments. A taxonomic key to these species is included.     

Sea-surface temperature estimates in the Southeast Pacific based on planktonic foraminiferal species; modern calibration and Last Glacial Maximum

Estimates of sea-surface temperatures based on foraminiferal faunal species suggest that the Eastern Equatorial Pacific Ocean was 3–5°C cooler during the Last Glacial Maximum (LGM) than at present. Analysis of new cores from the Southeast Pacific reveals a likely source of ice-age cooling in variations of the Peru Current. Off southern Peru, LGM ocean temperatures were 6–8°C cooler than at present, consistent with substantial cooling on land inferred from regional glacier advances and ice-core data. In the Southeast Pacific, ice-age foraminiferal assemblages have good modern analogs, and transfer functions that define assemblages based on ancient samples yield results similar to those based on coretop samples. During the LGM, subpolar species dominate the Eastern Boundary Current off Peru and extend to the equator. In contrast, the range of the equatorial upwelling species remains roughly constant. We infer from these data and a heat budget model that equatorward advection of cool water, more than equatorial upwelling, drove LGM cooling of the Eastern Tropical Pacific Ocean.     

中国海结螺属四新纪录(腹足纲,骨螺科)

在对中国科学院海洋研究所历年来采集的骨螺科Muricidae标本进行整理分类时,共鉴定出结螺属Morula12种,其中4个中国新纪录：1）刺猬结螺Morula（M.）echinata（Reeve,1846）;2）紫结螺Morula（M.）purpureocincta（Preston,1909）;3）石优美结螺Morula（H.）lepida（Houart,1994）;4）白优美结螺Morula（H.）ambrosia（Houart,1994）.     

A new species of Peltidium Philippi, 1839 (Crustacea,Copepoda, Harpacticoida) from the Pacific coast of Mexico

During the analysis of phytal meiobenthic samples collected from a rocky-sandy beach in the state of Nayarit, in the Mexican Pacific, several specimens of harpacticoid copepods were obtained and taxonomically examined. These specimens were found to represent an undescribed species of the peltidiid genus Peltidium Philippi, 1839. The new species, Peltidium nayarit sp. n. is described herein. It resembles Peltidium nichollsi Geddes and Peltidium lerneri Geddes from Bahamas but also the widespread Peltidium speciosum Thompson & Scott and Peltidium purpureum Philippi. The new species from the Mexican Pacific differs from its known congeners by its possession of a unique combination of characters, including a modified pectinate seta on the antennary exopod, three terminal setae on the second endopodal segment of leg 1, third exopodal segment of leg 1 with three elements, inner terminal claw twice as long as outer claw, female fifth leg with 5 exopodal setae, exopodal setae I-III stout, spinulose and seta IV being as long as seta V. This is the second species of the family known to be distributed in the Eastern Tropical Pacific and in Mexico. Pending additional data, the distribution of this species appears to be restricted to this area of the Mexican Pacific.     

Diversity of the free-living marine and freshwater Copepoda (Crustacea) in Costa Rica: a review

The studies on marine copepods of Costa Rica started in the 1990’s and focused on the largest coastal-estuarine systems in the country, particularly along the Pacific coast. Diversity is widely variable among these systems: 40 species have been recorded in the Culebra Bay influenced by upwelling, northern Pacific coast, only 12 in the Gulf of Nicoya estuarine system, and 38 in Golfo Dulce, an anoxic basin in the southern Pacific coast of the country. Freshwater environments of Costa Rica are known to harbor a moderate diversity of continental copepods (25 species), which includes 6 calanoids, 17 cyclopoids and only two harpacticoids. Of the +100 freshwater species recorded in Central America, six are known only from Costa Rica, and one appears to be endemic to this country. The freshwater copepod fauna of Costa Rica is clearly the best known in Central America. Overall, six of the 10 orders of Copepoda are reported from Costa Rica. A previous summary by 2001 of the free-living copepod diversity in the country included 80 marine species (67 pelagic, 13 benthic). By 2009, the number of marine species increased to 209: 164 from the Pacific (49% of the copepod fauna from the Eastern Tropical Pacific) and 45 from the Caribbean coast (8% of species known from the Caribbean Basin). Both the Caribbean and Pacific species lists are growing. Additional collections of copepods at Cocos Island, an oceanic island 530 km away of the Pacific coast, have revealed many new records, including five new marine species from Costa Rica. Currently, the known diversity of marine copepods of Costa Rica is still in development and represents up to 52.6% of the total marine microcrustaceans recorded in the country. Future sampling and taxonomic efforts in the marine habitats should emphasize oceanic environments including deep waters but also littoral communities. Several Costa Rican records of freshwater copepods are likely to represent undescribed species. Also, the biogeographic relevance of the inland copepod fauna of Costa Rica requires more detailed surveys.     

Interspecific hybridization and restricted trans-Pacific gene flow in the Tropical Eastern Pacific Pocillopora

Coral reefs in the Tropical Eastern Pacific (TEP) are among the most isolated in the world. This isolation has resulted in relatively low species diversity but comparatively high endemism. The dominant reef-building corals of the TEP are the Pocillopora corals, a ubiquitous Indo-Pacific genus commonly regarded as inferior reef-builder. In addition to being the dominant reef-builders in the TEP, the Pocilloporids have undergone a reproductive shift from internally brooding larvae through most of their Indo-Pacific range to free-spawning in the TEP. Using genetic data from the internally transcribed spacer (ITS) regions of the nuclear ribosomal DNA gene cluster, we show here that this apparent reproductive shift coincides with interspecific hybridization among TEP Pocillopora species. We document a pattern of one-way gene flow into the main TEP reef builder P. damicornis from one or both of its TEP congeners — P. eydouxi and P. elegans . Our data provide preliminary evidence that trans-Pacific gene flow in P. damicornis between the Central and Eastern Pacific is restricted as well (Φ_ST = 0.419, P  < 0.0001). In combination, these results suggest that Eastern Pacific corals exist in relative isolation from their Central Pacific counterparts and interact with each other differently via hybridization.     

Isolation of potential fungal pathogens in gorgonian corals at the Tropical Eastern Pacific

A major environmental problem in the ocean is the alarming increase in diseases affecting diverse marine organisms including corals. Environmental factors such as the rising seawater temperatures and terrestrial microbial input to the ocean have contributed to the increase in diseased organisms. We isolated and identified the fungal agents that may be leading to a disease in the Pacific sea fan Pacifigorgia eximia (Gorgoniidae, Octocorallia) in the Tropical Eastern Pacific. We isolated thirteen fungal genera in healthy and diseased colonies including Aspergillus sydowii. Aspergillus has been previously identified as responsible for the mortality of gorgonian corals in the Caribbean. This disease was observed in the Eastern Pacific affecting a completely different set of species nearly 30 years after the Caribbean outbreak, which concur with rising seawater temperatures and thermal anomalies that have been observed in the last 4 years.     

Syllinae (Syllidae: Polychaeta) of the Parque Nacional de Coiba, Panama]

Four expeditions were made to Coiba National Park between 1996 and 1998 to characterize this part of the poorly known Panamian Pacific polychaete fauna. The samples were collected by SCUBA diving, either by removing 4 kg blocks of dead coral (Pocillopora sp.) or scraping off 25 x 25 cm quadrats of Telesto multiflora or algae (Dyctiota cf. flavellata, Padina cf. durvillaei and another currently unidentified species). This paper deals with the Syllinae from hard substrates. Twenty-two species belonging to six genera of the subfamily Syllinae Grube, 1850 (Syllidae: Polychaeta) are reported. A new species, Syllis castroviejoi, is described. Four species are newly reported for the Eastern Pacific: Syllis beneliahuae (Campoy & Alquézar, 1982), S. botosaneanui (Hartmann-Schr?der, 1973), S. corallicola Verrill, 1900 and S. garciai (Campoy, 1982), and, likewise, two species are first reports for the Central American Pacific coast: Branchiosyllis pacifica Rioja, 1941 and Syllis truncata Haswell, 1920. Two species, Syllis magna (Westheide, 1974) and S. pigmentata (Chamberlin, 1919), are newly reported for Panama.     

Origin, diversification, and historical biogeography of the genus Trachurus (Perciformes: Carangidae)

We addressed phylogenetic relationships in the genus Trachurus using cytochrome b gene and D-loop sequences. The trees showed five groups: (1) the Southwest Pacific species (T. japonicus, T. novaezelandiae, and T. declivis); (2) The Mediterranean Sea and Eastern Atlantic species (T. mediterraneus); (3) The Atlantic Ocean species (T. lathami and T. trecae); (4) Eastern Atlantic species (T. trachurus and T. capensis); and (5) a group of highly mobile pelagic species, two from the Eastern Pacific (T. symmetricus and T. murphyi) and one from the Eastern Atlantic (T. picturatus). The phylogeny based on Cyt b, supports the molecular clock hypothesis and our results agree with the reported fossil indicating that the origin of this genus occur when the Thetys Sea closed (around 18.4 MYA). In addition, a very slow neutral substitution rate is reported identified only two periods of maximum diversification: the first occurring between 18.4 and 15.0 MYA and the second between 8.4 MYA and present day.     

Range extension and morphological characterization of rhodolith-forming species (Corallinales,Rhodophyta) from shallow water in the Mexican South Pacific

Living rhodolith beds are widely distributed along the Eastern Pacific ocean. Despite their widespread distribution, little is known about the rhodolith-forming species from shallow water in the Mexican South Pacific. Many taxonomic and morphological studies about rhodoliths have been carried out in the Gulf of California, where the forming species belong to the Hapalidiaceae and Corallinaceae families. This paper is the first report on the occurrence of the rhodolith-forming Hapalidiaceae species Lithothamnion muelleri and Phymatolithon repandum at three sites in the Mexican South Pacific. The branch density, maximum length and sphericity were measured for each determined species. Rhodoliths were distributed between 4 and 6 m depth, but differences in the branch density between species and sites were not found. Finally, the present record of L. muelleri fills the gap in the species distribution along the Eastern Pacific ocean, while the record of P. repandum is the first of the species in the region.     

Marine biodiversity in the Atlantic and Pacific coasts of South America: knowledge and gaps

The marine areas of South America (SA) include almost 30,000 km of coastline and encompass three different oceanic domains--the Caribbean, the Pacific, and the Atlantic--ranging in latitude from 12°N to 55°S. The 10 countries that border these coasts have different research capabilities and taxonomic traditions that affect taxonomic knowledge. This paper analyzes the status of knowledge of marine biodiversity in five subregions along the Atlantic and Pacific coasts of South America (SA): the Tropical East Pacific, the Humboldt Current,the Patagonian Shelf, the Brazilian Shelves, and the Tropical West Atlantic, and it provides a review of ecosystem threats and regional marine conservation strategies. South American marine biodiversity is least well known in the tropical subregions (with the exception of Costa Rica and Panama). Differences in total biodiversity were observed between the Atlantic and Pacific oceans at the same latitude. In the north of the continent, the Tropical East Pacific is richer in species than the Tropical West Atlantic, however, when standardized by coastal length, there is very little difference among them. In the south, the Humboldt Current system is much richer than the Patagonian Shelf. An analysis of endemism shows that 75% of the species are reported within only one of the SA regions, while about 22% of the species of SA are not reported elsewhere in the world. National and regional initiatives focusing on new exploration, especially to unknown areas and ecosystems, as well as collaboration among countries are fundamental to achieving the goal of completing inventories of species diversity and distribution.These inventories will allow accurate interpretation of the biogeography of its two oceanic coasts and latitudinal trends,and will also provide relevant information for science based policies.     

Revision of some comasterid genera from Australia (Echinodermata: Crinoidea), with descriptions of two new genera and nine new species

Morphological characters used in comasterid taxonomy are reappraised. As a result, form and distribution of pinnule combs are newly promoted as primary characters of generic recognition. Form and arrangement of cirri and division series, as used by A. H. Clark (1931), are rejected as characters important in recognizing taxa higher than species. Five of 12 comasterid genera reported as occurring in Australian waters (H. L. Clark, 1946) are critically examined. Of these genera, Comantheria A. H. Clark, 1909b is referred to the synonymy of Comanthus A. H. Clark, 1908a, Comanlhoides A. H. Clark, 1931 is referred to the synonymy of Cenolia A. H. Clark, 1916b, and Comanthina A. H. Clark, 1909b is maintained. In addition, two new genera are described. These genera are related by the occurence of the first brachial syzygy at 3 + 4 on all arms. Twenty-six species within the five genera are now recognized in Australian waters. Nine new species are described, and the 17 existing species are rediagnosed and critically reappraised. The revision involves taxa distributed throughout the Indo-west Pacific region, as far west as S Africa.     

Ichthyofauna of the Navidad Bay, Jalisco, México]

A check-list and the relative abundance of the ichthyofauna from Bahia de Navidad, Jalisco, Mexico is presented. This poorly known area of the eastern Tropical Pacific ocean is characterized by its great fish diversity. A total of 245 fish species (163 genera, 72 families) were collected during the 1994-1995 annual cycle. Vouchers were deposited in Centro de Ecologia Costera, Universidad de Guadalajara. The most important families in number of species were Carangidae (20 species), Haemulidae (20), Serranidae (17), Sciaenidae (13) and Lutjanidae (8); 20 species represented 85% and 80% of relative abundance and biomass respectively. Microlepidotus brevipinnis, Caranx caninus, Caranx caballus, Kiphosus analogus and Caranx sexfasciatus, were the dominant species. Most fish species collected in Bahia de Navidad have zoogeographical affinity with the Panamic Province (65%), and in lesser proportion with the Eastern Pacific Ocean (19%), Circumtropical (7%), Mexican Province (5%), Indo-Pacific Ocean (3%) and Gulf of California (0.4%). The great ichthyological affinity between the study area and the southern Gulf of California suggests an extension of the of Gulf southern limit.