Identification of two mosquitocidal Bacillus cereus strains showing different host ranges

Mosquitocidal bacteria, M413 and C32 have been isolated from sediment samples collected from woodland and ditch, respectively. Gas chromatographic analysis of fatty acids methyl esters (GC-FAME) and 16S rRNA gene sequence alignment results showed these isolates belong to Bacillus cereus. The SDS-PAGE analysis of sporulated cultures of both isolates showed two major bands very similar in size. Interestingly, however, M413 is mainly toxic to 4th instars of Ochlerotatus taeniorhynchus whereas C32 is to those of Culex quinquefasciatus.     

Arabidopsis thaliana genes expressed in the early compatible interaction with root-knot nematodes

In the compatible interaction between Arabidopsis thaliana and the endoparasitic nematode Meloidogyne incognita, galls are formed on the roots of the host plant. Differential display was used to identify alterations of gene expression in young A. thaliana root galls caused by M. incognita. Six genes were confirmed as plant genes by DNA gel blot hybridizations. Significant homology was found with a trypsin inhibitor, peroxidase, mitochondrial uncoupling protein, endomembrane protein, 20S proteasome alpha-subunit, and diaminopimelate decarboxylase. The cellular and temporal expression of each of the six genes was analyzed by mRNA in situ hybridizations.     

Early expressed genes showing a dichotomous developing pattern in the lancelet embryo

Lancelets (amphioxus), although showing the most similar anatomical features to vertebrates, never develop a vertebrate-like head but rather several structures specific to this animal. The lancelet anatomical specificity seems to be traceable to early developmental stages, such as the vertebrate dorsal and anterior-posterior determinations. The BMP and Wnt proteins play important roles in establishing the early basis of the dorsal structures and the head in vertebrates. The early behavior of BMP and Wnt may be also related to the specific body structures of lancelets. The expression patterns of a dpp-related gene, Bbbmp2/4, and two wnt-related genes, Bbwnt7 and Bbwnt8, have been studied in comparison with those of brachyury and Hnf-3beta class genes. The temporal expression patterns of these genes are similar to those of vertebrates; Bbbmp2/4 and Bbwnt8 are first expressed in the invaginating primitive gut and the equatorial region, respectively, at the initial gastrula stage. However, spatial expression pattern of Bbbmp2/4 differs significantly from the vertebrate cognates. It is expressed in the mid-dorsal inner layer of gastrulae and widely in the anterior region, in which vertebrates block BMP signaling. The present study suggests that the lancelet embryo may have two distinct developmental domains from the gastrula stage, the domains of which coincide later with the lateral diverticular and the somitocoelomic regions. The embryonic origin of the anterior-specific structures in lancelets corresponds to the anterior domain where Bbbmp2/4 is continuously expressed.     

不同昆虫寄主对昆虫病原线虫共生菌的敏感性比较

用菜青虫、棉铃虫、甜菜夜蛾、玉米螟、粘虫、黄粉虫等 6种昆虫对 1 0株昆虫病原线虫共生菌进行了敏感性测定。结果表明 :供试菌株对 6种昆虫都有胃毒活性 ,不同菌株对同一种昆虫的毒力差别较大 ,同一菌株对不同昆虫差别也很大。 1 0株菌在 1 2 0h对菜青虫的校正死亡率和体重抑制率均最高 ,显然是最敏感的寄主。在 1 0株共生菌中 ,XenorhabdusnematophilaHB3 1 0 5 9菌株的胃毒活性最高。     

Single nucleotide polymorphism (SNP) discovery in porcine expressed genes

High-throughput genotyping of swine populations is a potentially efficient method for establishing animal lineage and identification of loci important to animal health and efficient pork production. Markers were developed based upon single nucleotide polymorphisms (SNPs), which are abundant and amenable to automated genotyping platforms. The focus of this research was SNP discovery in expressed porcine genes providing markers to develop the porcine/human comparative map. Locus specific amplification (LSA) and comparative sequencing were used to generate PCR products and allelic information from parents of a swine reference family. Discovery of 1650 SNPs in 403 amplicons and strategies for optimizing LSA-based SNP discovery using alternative methods of PCR primer design, data analysis, and germplasm selection that are applicable to other populations and species are described. These data were the first large-scale assessment of frequency and distribution of porcine SNPs.     

Genomic overview of closely related fungi with different Protea host ranges

Genome comparisons of species with distinctive ecological traits can elucidate genetic divergence that influenced their differentiation. The interaction of a microorganism with its biotic environment is largely regulated by secreted compounds, and these can be predicted from genome sequences. In this study, we considered Knoxdaviesia capensis and Knoxdaviesia proteae, two closely related saprotrophic fungi found exclusively in Protea plants. We investigated their genome structure to compare their potential inter-specific interactions based on gene content. Their genomes displayed macrosynteny and were approximately 10 % repetitive. Both species had fewer secreted proteins than pathogens and other saprotrophs, reflecting their specialized habitat. The bulk of the predicted species-specific and secreted proteins coded for carbohydrate metabolism, with a slightly higher number of unique carbohydrate-degrading proteins in the broad host-range K. capensis. These fungi have few secondary metabolite gene clusters, suggesting minimal competition with other microbes and symbiosis with antibiotic-producing bacteria common in this niche. Secreted proteins associated with detoxification and iron sequestration likely enable these Knoxdaviesia species to tolerate antifungal compounds and compete for resources, facilitating their unusual dominance. This study confirms the genetic cohesion between Protea-associated Knoxdaviesia species and reveals aspects of their ecology that have likely evolved in response to their specialist niche.     

Two amidophosphoribosyltransferase genes of Arabidopsis thaliana expressed in different organs

Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis. We have identified several cDNA clones whose amino acid sequences exhibit similarity with the known ATases in a cDNA library of young floral buds of Arabidopsis thaliana. The cDNA clones are derived from two genes homologous with each other. These cDNAs represent the first plant representatives of ATase gene. Structural comparison with ATases of other organisms has revealed that the two genes encode [4Fe-4S] cluster-dependent ATases. Northern blot analysis showed that expression level of the genes is different in three organs; one gene is expressed in flowers and roots, while the other gene is mainly expressed in leaves.     

Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialisation

This essay considers biotrophic cyst and root-knot nematodes in relation to their biology, host-parasite interactions and molecular genetics. These nematodes have to face the biological consequences of the physical constraints imposed by the soil environment in which they live while their hosts inhabit both above and below ground environments. The two groups of nematodes appear to have adopted radically different solutions to these problems with the result that one group is a host specialist and reproduces sexually while the other has an enormous host range and reproduces by mitotic parthenogenesis. We consider what is known about the modes of parasitism used by these nematodes and how it relates to their host range, including the surprising finding that parasitism genes in both nematode groups have been recruited from bacteria. The nuclear and mitochondrial genomes of these two nematode groups are very different and we consider how these findings relate to the biology of the organisms.     

Sequence polymorphism of candidate behavioural genes in Drosophila melanogaster flies from 'Evolution canyon'

This study focuses on the molecular features of three candidate behavioural genes in Drosophila melanogaster from the opposite slopes of Nahal Oren Canyon, Mount Carmel, Israel. These slopes display dramatic physical and biotic contrasts. Spatial variation of microclimatic conditions leads to adaptive differentiation and partial sexual isolation of populations, as suggested by our previous studies. The chosen candidate genes presumably contributing to genetic variation in sexual behaviour of Drosophila in the Canyon were desaturase, period, and no-on-transient A. These genes are known to include polymorphic repeated sequences, insertions/deletions, or nucleotide substitutions. The idea was that their polymorphism might be one of the determinants of behavioural peculiarities of flies derived from the opposite slopes. Indeed, interslope differences in the sequence encoding the (Thr-Gly)n repeat (exon 5) of the period gene were established, suggesting evolutionary functional importance. In particular, we unraveled variation in the length and composition of this region in different NFS (north-facing slope) and SFS (south-facing slope) lines. The 'European' allele (n = 20) was a 2.6-fold more abundant on the NFS compared to the SFS. This predominance probably gives some advantages for flies inhabiting wet and less warm conditions of the NFS. We suggest that repeat length/composition may influence the functional features of flies, i.e. habitat choice, nonrandom mating, and temperature adaptation. A series of female single-mate-choice tests show that females derived from NFS distinguish between males with specific per alleles (n = 17 vs. n = 20), as well as between males originated from the opposing slopes. Females from SFS were less discriminating and did not manifest significant deviation from random mating.     

Preferential infectivity of entomopathogenic nematodes in an envenomed host

Entomopathogenic nematodes and parasitoid wasps are used as biological control agents for management of insect pests such as the Indian meal moth, Plodia interpunctella. The parasitoid wasp Habrobracon hebetor injects a paralytic venom into P. interpunctella larvae before laying eggs. A previous study reported that the entomopathogenic nematode Heterorhabditis indica preferentially infects P. interpunctella that have been envenomed by H. hebetor while results in this study showed a similar preference by the entomopathogenic nematode, Steinernema glaseri. We therefore tested four hypotheses for why nematode infection rates are higher in envenomed hosts: (1) elevated CO₂ emission from envenomed hosts attracts nematodes, (2) paralysis prevents hosts from escaping nematodes, (3) volatile chemicals emitted from envenomed hosts attract nematodes and increase infection, and (4) reduced immune defenses in envenomed hosts increase nematode survival. Results showed that envenomed P. interpunctella larvae emitted lower amounts of CO₂ than non-envenomed larvae. Physical immobilization of P. interpunctella larvae did not increase infection rates by S. glaseri but did increase infection rates by H. indica. Emissions from envenomed hosts were collected and analyzed by thermal desorption gas chromatography/mass spectrometry. The most abundant compound, 3-methyl-3-buten-1-ol, was found to be an effective cue for S. glaseri attraction and infection but was not an effective stimulus for H. indica. Envenomed P. interpunctella exhibited a stronger immune response toward nematodes than non-envenomed hosts. Altogether, we conclude that different mechanisms underlie preferential infection in the two nematode species: host immobilization for H. indica and chemical cues for S. glaseri.     

Community structure and spatial variability of marine nematodes in tropical Australian pioneer seagrass meadows

The spatial variability in the community structure of infaunal free-living marine nematodes of pioneer seagrass (Halophilaand Halodule) meadows within a deltaic mangrove estuarine system and a bay mangrove system in tropical north-eastern Australia were examined. Nematode mean densities were intermediate ranging from 609 to 2744 inds./10 cm². A total of 152 putative species from 94 genera and 22 families were found across the four sites. The communities exhibited a high degree of dominance by Terschellingia longicaudata, Catanema sp 1, Terschellingia sp 2 and Metalinhomoeus insularis.Non-metric multi-dimensional scaling (nMDS) revealed that intra-site variability was low. This was reinforced by 1-way MANOVA, showing no significant inter-station differences between the six most dominant species at each site. The main system difference was reflected by a greater percentage of the Desmodoridae combined with a reduction of the Linhomoeidae in the bay system. At a species level system differences were manifested by a stenohaline, brackish water nematode assemblage in the deltaic system (M. insularis, Terschellingoidessp 1, Pseudolellasp 1) and, by a stenohaline, marine nematode assemblage in the bay system (Catanema sp 1, Spirinia parasitifera, Actinonemasp 1). These communities represent `hotspots' of diversity within a wider, mangrove-influenced depauperate fauna. The high degree of dominance found in each community was countered by moderate diversity and this, combined with the high number and speciation of deposit-feeding species, suggests that nematodes were more abundant in the meadows due to the abundance of microbial food. Notwithstanding the different salinity/CaCO₃ regimes, these communities exhibit both intra- and inter-site homogeneity with dominance by a conservative, deep-dwelling guild. The fact that this homogeneity exists suggests that these small-bladed seagrass species may play a greater role (sediment stability, fine particle settlement, organic detritus) in influencing the infaunal nematode community than was previously thought.     

Production of high-titer helper virus-free retroviral vectors by cocultivation of packaging cells with different host ranges.

The titer of retroviral vectors can be increased by cocultivation of retrovirus packaging cells that produce a vector with packaging cells having a different host range. Multiple rounds of infection occur in such cultures, producing an amplification of vector copy number and titer. Production of a vector with a very high titer of over 10(10) CFU per ml of conditioned medium has been reported, although replication-competent helper virus was also present. Since helper-free virus is a requirement for many applications of retroviral vectors, we repeated this procedure with a modified vector and achieved a 2- to 10-fold amplification of vector titer in the absence of helper virus, up to 2 x 10(7) CFU/ml. We have also repeated these experiments with the same vector and methods described previously or have assayed virus from the high-titer vector-producing cell line reported previously and observed maximum titers of 10(8) CFU/ml, invariably accompanied by helper virus. Thus, while amplification of vector titer in the absence of helper virus is possible, some unexplained difference in the assays for virus titer must account for our inability to obtain the exceptionally high vector titers that were reported previously.     

Proper expression of myosin genes in transgenic nematodes

[This corrects the article on p. 3419 in vol. 8, PMID: 2583105.].     

Variation in the number of expressed MHC genes in different cattle class I haplotypes

 Analysis of cattle major histocompatibility complex (MHC) (BoLA) class I gene expression using serological and biochemical methods has demonstrated a high level of polymorphism. However, analysis of class I cDNA sequences has failed to produce conclusive evidence concerning the number and nature of expressed genes. Such information is essential for detailed studies of cattle immune responses, and to increase our understanding of the mechanisms of MHC evolution. In this study a selective breeding programme has been used to generate a number of MHC homozygous cattle expressing common serologically defined class I specificities. Detailed analysis of five class I haplotypes was carried out, with transcribed class I genes identified and characterized by cDNA cloning, sequence analysis, and transfection/expression studies. Surface expression of the gene products (on lymphocytes) was confirmed using monoclonal antibodies of defined BoLA specificity. Phylogenetic analysis of available transcribed cattle MHC class I sequences revealed complex evolutionary relationships including possible evidence for recombination. The study of individual haplotypes suggests that certain groupings of related sequences may correlate with loci, but overall it was not possible to define the origin of individual alleles using this approach. The most striking finding of this study is that none of the cattle class I genes is consistently expressed, and that in contrast to human, haplotypes differ from one another in both the number and composition of expressed classical class I genes. Received: 15 February 1999 / Revised: 23 June 1999