On the reversibility of environmentally induced alterations in abstract biological systems

The environmentally induced alterations in structure of (M, ℜ) which were described previously (R. Rosen,Bull. Math. Biophysics,23, 165–171, 1961) are examined from the standpoint of determining under what circumstances they can be reversed by further environmental interactions. For simplicity we consider only the case of (M, ℜ)-systems possessing one “metabolic” and one “genetic” component. In the case of environmentally induced alteration of the “metabolic” component alone, a necessary and sufficient condition is given for the reversibility of the alteration. In the case of alteration of the “genetic” component, the situation becomes more complex; several partial results are given, but a full analysis is not available at this time. Some possible biological implications of this analysis are discussed. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command, under Contract no. AF-49(638)-917 and Grant no. AF-AFOSR-9-63.     

Some results in graph theory and their application to abstract relational biology

It has been shown in earlier work that one approach to what Rashevsky has called “abstract biology” is through the study of the class of ( )-systems that can be formed in an arbitrary subcategory of the category of sets. The concept of the ( )-system, however, depends on the availability of mappings that contain other mappings in their range. It is shown that, by introducing an appropriate measure for this property, the problem of characterizing those categories suitable for a rich theory of ( )-systems reduces to a problem familiar from the general theory of graphs. Some new results in these directions are obtained, and it is then shown that any category with mappings that possess properties we might expect to hold in the physical world will also admit a rich theory of ( )-systems. In particular, it is shown that a sufficiently large family of mappings drawn at random from such a category will with overwhelming probability contain an ( )-system. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command, under Grant No. AF-AFOSR-9-63.     

A canonical form for neural nets without circles

By “neural net” will be meant “neural net without circles.” Every neural net effects a transformation from inputs (i.e., firing patterns of the input neurons) to outputs (firing patterns of the output neurons). Two neural nets will be calledequivalent if they effect the same transformation from inputs to outputs. A canonical form is found for neural nets with respect to equivalence; i.e., a class of neural nets is defined, no two of which are equivalent, and which contains a neural net equivalent to any given neural net. This research was supported by the U.S. Air Force under Contract AF 49(638)-414 monitored by the Air Force Office of Scientific Research.     

The fine structure of the visual system of lycosa (Araneae: Lycosidae)

Summary The optic lobes of spiders contain a well differentiated synaptic region — the lame medullaire — in which the photoreceptor axon terminals synapse with the axons of the second order neurons.Each photoreceptor terminal has a very irregular outline and contains a great number of vesicles. It sends out collateral branches which end either in contact with other photoreceptor terminals or in contact with second order fibers. The second order fibers lie deeply recessed within folds of the photoreceptor terminal membrane. Frequently branches of the second order fibers can be seen as independent elements within the photoreceptor terminals. The synaptic loci are characterized by the presence of synaptic ribbons surrounded by cumuli of vesicles. These synaptic loci are always located at the intermembrane cleft between adjacent second order fibers.Synaptic structures have been found also within the second order fibers which in such cases appear as pre-synaptic elements in regard to the photoreceptor terminals.Research sponsored by the Air Force Office of Scientific Research, Office of Aerospace Research, United States Air Force, under AFOSR Grant Nr. 618-64.     

Mathematical biophysics of color vision II: Theory of color changes induced by the alternation of colors at various frequencies.

A model previously introduced to account for a number of phenomena of color vision is studied for the conditions in which the alternation of colors is periodic. The case of three primary receptors having no differences in their time constants is considered for the situations such as the temporal alternation of two primaries, a primary and a neighboring binary, a primary and white, a binary and white, etc. Using the same mathematical model which was used to account for the enhancement effect of interrupted illumination, it is found possible to account for observed changes in hue in a qualitative manner. A method is suggested for measuring the color changes quantitatively. This method is readily adapted for demonstration purposes. The model shows that there should be differences between “primaries” and “binaries” with respect to change in hue. In principle, therefore, comparison between theory and experiment should yield information regarding the physiological primaries. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command under contract No. AF 18 (600) 1454.     

A note on the quantum-theoretic basis of primary genetic activity

In previous work (Bull. Math. Biophysics,23, 393–403, 1960) it was shown that, if primary genetic processes are of an essentially microphysical nature, the objects bearing the primary genetic information must act in a catalytic fashion. At the same time it was pointed out that the kind of catalysis involved in the primary genetic process was fundamentally different, in specific ways, from that occurring, e.g., in enzyme systems. The present work demonstrates that, if the information-bearing objects of the general theory are identified with molecules of DNA, and the primary gene products are considered to be RNA of the “messenger” variety, then the predictions of the general theory can be compared with experimental data from various recently isolated polymerase systems, which appear to “copy” a sequence of nucleotides from DNA into RNAin vitro, and with certainin vivo microbial systems. It is found that these data provide detailed support for the conclusions drawn from the general theory. However, it is emphasized that the identification of the information-bearing objects and primary gene products as DNA and RNA respectively, which allows us to compare the theory with the cited data, is by no means the only identification which can be made; i.e., other interpretations of the general theory are certainly not precluded. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command, under Grant No. AF-AFOSR-9-63.     

Experimental technique for growth of Trichophyton mentagrophytes on fabric

Various techniques were used to develop a method for the growth ofTrichophyton mentagrophytes on fabrics. Air Force sock samples composed of wool, nylon and cotton mixtures were used as test materials. Growth of the organism on sock samples was obtained at 23°C and 70% relative humidity after seeding with horsehair spraying with yeast extract.Contribution no. 162. Department of Infectious Diseases, College of Veterinary Medicine, Kansas Agricultural Experiment Station, Manhattan, 66502.This study was supported under the Project Themis Program (USAFORSR Contract F 44620-68-C-0020 sponsored by the United States Air Force).     

On the role of chemical systems in the microphysical aspects of primary genetic mechanisms

It is pointed out that two fundamentally different views of primary genetic processes occur in the literature which are frequently confused. The first is a true communication-theoretic view, which regards the genetic apparatus as containing a real information-source and a transducer which converts that information to useful form. The second view is generally expressed as a template scheme based on the Watson-Crick model; it is shown that in this model there is actually no such thing as genetic information in a communication-theoretic sense. Both views are then discussed on the basis of microphysical principles developed in previous work of the author (Bull. Math. Biophysics,22, 227–255, 1960) in an attempt to find which approach is in closer accord with the biological facts. It is shown that, if the communication-theoretic view is correct, then the information-bearing object must act as a “catalyst,” but it is pointed out that the type of catalysis involved must be of a fundamentally different nature than that occurring in familiar enzyme-catalyzed reactions. On the basis of general considerations of irreversible changes in microphysical measuring systems, it is shown that any type of template must suffer a gradual and irreversible denaturation, which seems to make it unlikely that a template could play a primary role in fundamental genetic processes. This research was supported by the United States Air Force through the Air Force Office of Scientific Research of the Air Research and Development Command, under Contract AF 49(638)-917.     

Genetische Untersuchungen bei funktionell-obstruktiver subvalvulärer Aortenstenose (irregulär hypertrophischer Kardiomyopathie)

Summary Family investigations have been carried out on 32 propositi with functional obstructive subvalvular aortic stenosis. In the families of 15 propositors members were further-more affected. According to our own observations as well as to the literature this heart disease shows an autosomal dominant mode of inheritance with a reduced penetrance and variable manifestations. Using the maximum-likelihood-method, the risk of the brothers or sisters to be affected is calculated as being between (k=0, r_min=1) and (k=1, r_min=1). The probability of parents in the “familial” observations to be affected is between 32.9±8.1 and 33.3±8.1. Only one half of the cases observed are “familial”, the others are “sporadic”. It is not impossible, that a part of the sporadic cases could be dominant mutants, because the mean age of the fathers at the birth is higher than expected.

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Direktor: Prof. Dr. med. P. E. Becker

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Mit Unterstützung durch die Deutsche Forschungsgemeinschaft.     

A note on abstract relational biologies

It is shown that the class of abstract block diagrams of (M, ℜ)-systems which can be constructed out of the objects and mappings of a particular subcategoryG ₀ of the categoryG of all sets depends heavily on the structure ofG ₀, and in particular on the number of sets of mappingsH(A, B) which are empty inG ₀. In the context ofG ₀-systems, there-fore, each particular categoryG ₀ gives rise to a different “abstract biology” in the sense of Rashevsky. A number of theorems illustrating the relation between the structure of a categoryG ₀ and the embeddability of an arbitrary mapping αεG ₀ into an (M, ℜ)-system are proved, and their biological implication is discussed. This research was supported by the United States Air Force through the Air Force Office of Scientific Reserch of the Air Research and Development Command, under Contract No. AF 49(638)-917.     

A stereologic electron microscope study of “tubular myelin figures” in alveolar fluids of rat lungs

Summary The three-dimensional structure of a composite material found in alveolar exudate of oxygen poisoned lungs but also present in normal lungs is stereologically analysed. It is composed of tubules of 450 Å diameter which are tightly packed in a quadratic lattice. The wall of the tub vile is formed by four-winged osmiophilic filaments which are located in the corners of the quadratic lattice; their interior is made up of a hydrophilic substance which contains either a tubule or a filament of moderate electron density. The osmiophilic substance of the walls is continuous with associated myelin figures which can be resolved into lamellae with a periodicity of 42 Å and can thus be considered to be water crystals of phospholipids. The nature of the content of the tubules, which presumably exerts the formative force on the phospholipid lamellae to form tubules, remains undetermined.Dedicated to Prof. W. Bargmann in honor of his 60th birthday.The research reported here has been sponsored by the Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung (Nr. 2569); by the Stiftung für wissenschaftliche Forschung an der Universität Zürich; by the National Institutes of Health, USPHS, through grant RF-57; and the 6570th Aerospace Medical Research Laboratories under contract AF 61(052)-784 through the European Office of Aerospace Research (OAR), United States Air Force.     

On the biotopology of protein biosynthesis

The present paper is an attempt to outline a possible approach to the study of concrete cellular systems in terms of relational biology as developed by Rashevsky and Rosen. The basic ideas and the formalism of Rosen’s (M,R)-systems, proposed as a model of abstract biological systems, are used in order to represent the cellular protein biosynthesis. A diagram corresponding to the activation of amino acids and synthesis of amino-acyl-transfer RNA, the attachment of _t RNA to a specific codon of messenger RNA and peptide bond synthesis with the release of a protein molecule, is constructed. The systemM thus obtained for the synthesis of a proteinp _k receives a set of environmental inputs, that is, the twently naturally occurring amino acids and emits a single output, thep _k protein. The problem of noncontractibility of inputs in the system is then analyzed. In our context, it is found that the noncontractibility is not associated with the whole amino acid setS _pk but with an “essential amino acid set” , so that and represent the set of amino acids which can be replaced or absent. According to our considerations, the biochemical concept of “essential amino acid” acquires a new significance, that is, what seems “essential” is linked with the ability to form a giventRNA _t ∼a _i complex in a suitable augmented dependent set essential for the biosynthesis of a functional protein. Eventually the discussion of re-establishability leads to some important biological implications concerning the existence of ambiguous codons and the degeneracy phenomenon in the genetic code, as anecessary biochemical tool involved in adaptive processes.     

Spatially distributed stochasticity and the constancy of ecosystems

Ifconstancy is a measure of an ecosystem's (in) variability through time andstability is a measure of the system's ability to damp and recover from environmental perturbations, then constancy depends not only on stability but also on the frequency and amplitude of perturbations—theenvironmental “noise level”. The stability of an ecosystem reflects its texture, extent, and viscosity (fine-scale structure); the noise level experienced by the system (“effective” noise level) reflects the level at any point (“ambient” noise level), the spectrum of stochastic scale (regional distribution of stochasticity), and the system's spatial extent (size, or number of patches included). The coefficient of variation of a limiting stochastic variate is a measure of the effective noise level. Ifp is the total number of patches in the system (its extent) andn is the number of contiguous patches with noise signals correlated through time (its stochastic scale), then the coefficient of variation is directly proportional to whenevern<p. Thus ecosystems of small stochastic scalen or large sizep damp out environmental noise by “spreading the risk” in space, thereby reducing their variability in time.     

The complete heart-lead relationship in the einthoven triangle

The relationship between the source strength and the “manifest vector” in the Einthoven Triangle is derived for a line and a point dipole source and confirmed experimentally. The result permits the interpretation of the standard ECG leads in absolute terms and corrected for body size. The manifest vector is shown to be approximately times what it would be in an otherwise similar circular slab which circumscribes the triangle.     

Conduction in demyelinated axons—A simplified model

This paper is concerned with conduction of the nervous impulse in a myelinated axon and the effect of demyelination on conduction characteristics. A model of nerve conduction called the “gunpowder fuse” model is presented which accurately predicts conduction velocities in both myelinated and unmyelinated nerves. The effect on conduction velocity in this model by reducing myelin thickness is examined by utilizing basic data and building and equivalent circuit. The result is a curve relating reduced conduction velocity to reduced myelin thickness. A similar analysis and resultant curve is derived from a saltatory conduction model. Supported in part by National Multiple Sclerosis Society Research Grant No. 516 and Air Force Grant AFOSR 669-67.     

Mutual Gains and Distributive Ideologies in South Africa: Theorizing Negotiations between Communities and Protected Areas

With the rise of joint management of protected areas, community representatives are increasingly involved in formal negotiations with state officials, nongovernmental organizations (NGOs) and other actors. Policy recommendations have commonly idealized “win-win” scenarios. Theoretical work on negotiation from psychology and management studies, however, points to identifiable circumstances under which the goal of a mutually beneficial “win-win” situation may limit the strategies, and ultimately the benefits, available to communities. Instead, an antagonistic, “distributive” approach to negotiations may be more compatible with the pressures on and strategies available to community representatives. The tensions between a “mutual gains” and “distributive” approach to negotiations are evident in two land claims on protected areas in South Africa: the Dwesa-Cwebe Nature Reserves, and the Pafuri Triangle, a portion of Kruger National Park. In each, NGOs that operated with a “mutual gains” strategy, espousing a “win-win” scenario, came to be perceived as collaborating with conservation agencies. Meanwhile, as negotiation theory would suggest, community representatives inclined towards a “distributive” strategy and allied with a second set of explicitly advocatory NGOs. Expecting that communities should embrace a “win-win” scenario from the outset is unrealistic and likely to reduce communities’ power in negotiations.

Blogging Evolution

A weblog (“blog”) is an publication on the WorldWideWeb in which brief entries are displayed in date order, much like a diary or journal. I describe the general characteristics of blogs, contrasting blogs with other of WWW formats for self-publishing. I describe four categories for blogs about evolutionary biology: “professional,” “amateur,” “apostolic,” and “imaginative.” I also discuss blog networks. I identify paradigms of each category. Throughout, I aim to illuminate blogs about evolutionary biology from the point of view of a user looking for information about the topic. I conclude that blogs are not the best type of source for systematic and authoritative information about evolution, and that they are best used by the information-seeker as a way of identifying what issues are of interest in the community of evolutionists and for generating research leads or fresh insights on one’s own work.

A quantum model for controlled enzymic reactions

A quantum model for the general enzymic reaction,E+S ⇌ ES → P, is presented, starting with the assumptions that any chemical substanceS, which may be a substrate for a particularE _(S)-enzyme is a microphysical system and any enzymeE-molecule, capable of interacting with anS-substrate is a “measuring system” which will “measure” one or more of theS-observables. According to the above assumptions a stochastic model of the reaction is constructed and a computer simulation of the steady state performed. The results thus obtained predicted fluctuations in the enzymic reaction rate, function of the substrate “perturbation”. On an experimental basis it is demonstrated that the irradiation of an enzymic substrate with low energies results in the inducement of a dose-dependent oscillatory behavior in the corresponding enzymic reaction rate. In the reaction type, the oscillations thus induced in theE-activity by the corresponding substrates are out-of-phase, realizing a biochemical discriminating net. Likewise, in an reaction type, the oscillations induced by the irradiatedS-substrate in the activities of the respective enzyme, realize a biochemical switching net.     

Characterization of a rat liver epithelial cell line to detect inhibitors of metabolic cooperation

Summary A normal rat liver epithelial cell line, with phenotype characteristics of “oval” cells (WB-F344), was examined for its ability to perform gap-junctional intercellular communication as measured by metabolic cooperation. To test for gap-junctional intercellular communication, 6-thioguanine-sensitive cells were cocultivated with 6-thioguanine-resistant cells. It was found that the recovery of 6-thioguanine-resistant cells depended on the densities of the 6-thioguanine-sensitive cells. Higher densities of 6-thioguanine-sensitive cells reduced the recovery of 6-thioguanine-resistant cells. These observations demonstrate that rat liver epithelial cells could metabolically cooperate, implying they could perform gap-junctional intercellular communication. Two tumor-promoting organochlorine pesticides, aldrin and dieldrin, were potent inhibitors of metabolic cooperation for these cells, but 12-0-tetradecanoyl-phorbol-13-acetate and teleocidin, known mouse skin tumor promoters, were not significantly effective in inhibiting metabolic cooperation. The results suggest that these cells might provide the basis for an in vitro assay specifically to study liver tumor promoters. Research was sponsored by a grant from the Air Force Office of Scientific Research, Air Force Systems Command, USAF, under grant AFOSR-86-0084. The U. S. Government is authorized to reproduce and distribute reprints for government purposes notwithstanding any copyright notation thereon.     

Electron microscope study on the regenerative process of peripheral nerves of mice

Summary An electron microscope study of the reactive process taking place in the proximal segment of sectioned dorso-spinal nerves of white mice was carried out in about 50 animals. Attention was mainly directed to the study of the earliest changes (30) observable in the neuroplasm but the series of experiments included the study of nerves fixed up to 20 days after section.Most of the facts found (existence of microvesicles, multiplication of mitochondria, and presence of multivesicular bodies) confirmed the observation done in a preceding investigation, plus some non-described new findings.Early after section (30) the nerve membrane is seen, in some cases, masked by the presence of microvesicles which seem to take origine from the membrane which also shows deep infoldings. These coalesce in many places taking thus the appearance of rows of vesicles.At later stages (60, 80) this reactive process is more general in the nerve stumps and vast areas of microvesicles are seen in the fiber neuroplasm. This kind of reaction (membrane infolding and coalescence) decrease later on and is rarely observable at 100. Microvesicles are nevertheless increasing in number and many of them change their round profile for an elongated shape. Elongation leads to the formation of tubuli of progressively thinner diameter. This process is described as a possible way of neurofilament formation.This research was supported by the United States Air Force under Contract No AF 49 (638) 585 and Grant AF 61–64, monitored by the Air Force Office of Scientific Research, Air Force Research Division of the Air Research and Development Command.