Spatial genetic structure of two sympatric neotropical palms with contrasting life histories

The spatial genetic structure within sympatric populations of two neotropical dioecious palm species with contrasting life histories was characterized to evaluate the influence of life history traits on the extent of genetic isolation by distance. Chamaedorea tepejilote is a common wind-pollinated arboreal understory palm. Chamaedorea elatior is an uncommon climbing subcanopy palm with entomophilous pollination syndrome. A total of 59 allozyme alleles for C. tepejilote and 53 alleles for C. elatior was analyzed using both unweighted (Iu) and weighted (Iw) Moran's I spatial autocorrelation statistics. The spatial genetic structure detected within these populations is consistent with those reported for highly dispersed plants. A significance test for differences between mean Moran's I-coefficients revealed less spatial genetic structure within the C. tepejilote population than that in the C. elatior population. Adjacent individuals of C. elatior exhibited significant spatial genetic autocorrelation (Iu=0.039, Iw=0.034), indicating a Wright's neighborhood size of about 100 individuals. For C. tepejilote, nonrandom genetic distribution among nearest neighbors was detected, even from small spatial autocorrelation values (Iu=0.008, Iw=0.009), consistent with a neighborhood size of about 300 individuals. For both species, seed dispersal, mortality among life cycle stages, overlapping generations, and contrasting traits of mating and reproduction influence the standing spatial genetic structure within populations.     

Early life histories of three sympatric sticklebacks in a salt-marsh

The effects of abiotic factors (water level, temperature, dissolved oxygen and salinity) and interspecific competition on the survival and growth of early life stages of three sympatric sticklebacks, Gasterosteus aculeatus , G. wheallandi and Pungitius pungitius , were studied in salt-marsh tide pools near Isle Verte, Quebec. Significant year-to-year variation was observed in the percentage of live eggs per nest, egg incubation times, and the growth and condition of juveniles for all three species. These differences were associated with variations in temperature, oxygen and salinity in the pools. Comparisons of egg survival and juvenile growth rates were also made for G. aculeatus living in two contrasting habitats of the salt-marsh, the harsh and variable tide pools, and a less harsh, less variable freshwater site. Egg incubation times were longer, and the percentage of live eggs per nest lower, in the river than in the pools. However, river juveniles had higher growth rates and condition factors than pool juveniles. Results of experiments to study interspecific competition between juvenile G. aculaetus and juvenile G. wheatlandi were inconsistent, and it is suggested that the effects of abiotic factors on the survival and growth of early life stages in sticklebacks are more important than competition at this site.     

Inter- and intraspecific variation in the life histories of three sympatric isopods in a Hong Kong forest

There is a paucity of data on the life-history strategies of tropical animals. Accordingly, the inter and intraspecific life-history variations of three sympatric isopods, Burmoniscus oceliutus (Philosciidae), Formosillo raffaelei and Orodillo maculatus (Armadillidae), were studied at two sites in a Hong Kong forest. All three isopods were iteroparous. Burmoniscus oceilutus had more frequent breeding bouts, and smaller broods than O. muculutus and F. raffaelei. Although the three isopods had different life spans, brood numbers and life-time fecundities, their rates of offspring production (number of eggs per month) were similar. The Hong Kong isopods had longer breeding periods, a greater number of broods per life time, and lower reproductive allocation per brood than their temperate counterparts. These findings were consistent with the predictions of r - and K-theory. Intraspecific, between-site differences in fecundity and brood dry weight of F. raffaelei could probably be explained by the variations in the size of gravid females. Burmoniscus ocellutus produced heavier eggs at the site with a higher population density, suggesting that conditions at the site with a higher isopod density may be more K-selecting. Female-biased sex ratios, possibly resulting from differential sex-specific mortality, were common among the isopod samples, and the possible adaptive significance of this pattern was discussed. The potential influence of phylogenetic constraints on the evolution of life-history strategies was also considered.     

Comparative life histories and microhabitat use in three sympatric sculpins (Cottidae:Cottus) in northeastern California

Synopsis Life histories of three sculpins endemic to the Pit River system, northeastern California, are detailed.Cottus pitensis is widely distributed throughout the drainage. This species is typically found in rapidly flowing, shallow water on coarse substrate. It grows to a large size, >100 mm, and lives to 5 years. Spawning occurs annually, in early spring. Fecundity is relatively low, <320 oocytes.Cottus asperrimus is restricted to a large population in Fall River and smaller concentrations in Hat Creek and Pit River. It is a relatively small fish, <80 mm, and lives to 5 years. It occurs in deep, slow-moving, often spring-fed streams, typically on fine substrates. Spawning lasts from autumn to early spring. Males establish nests on hard substrates and guard several clutches of eggs. Fecundity ranges from 140–580 oocytes.Cottus klamathensis macrops is relatively rare in the drainage. The largest concentration is in the Hat Creek system, smaller populations exist in Fall River and Pit River. This sculpin is found on coarse substrate, often where aquatic vegetation is abundant. It is typically found in slow, relatively shallow water. It grows to >100mm and lives to 5 years. Males guard eggs during the short spawning season beginning in late winter. Fecundity in this species reaches a maximum of 650 oocytes. Life history strategies vary within the genus, yet the life histories of these sculpins are more similar to each other than they are to many of their congeners. This within-group similarity may have resulted from exposure of all three species to similar environmental pressures. This is predicted by life-history theory.     

A test of a competition model with reference to three species of small mammals in south-eastern Australia

This study tests the hypothesis that competition occurs in a community of three species of small mammals (Antechinus stuartii and A. swainsonii, Marsupialia; Rattus fuscipes, Rodentia) in south-eastern Australia. The hypothesis was tested by using a simple model of competition that is based on two premises: I. competition results in a negative numerical or a negative spatial association between species, and II. competition is more intense where the densities of the competing species are relatively high. The model combines both premises and predicts that measures of association between competing species will be more negative where the species exist at high population densities than derived from the model and applied to data gathered in two study areas with contrasting mean animal densities. There was no evidence of numerical association among the species (three tests), but evidence of negative spatial association (three tests our of four). These latter findings were consistent with the predictions of the model. All species preferred the same broad kinds of habitat (macrohabitat), but they segregated into smaller, finer grained patches (microhabitat) when their numbers were relatively high. Such segregation was more evident between the two species of marsupials than between either species of marsupial and the eutherian rat. These findings suggested that competition occurs by interference, and reinforce the idea that an understanding of the behaviour of individuals is important to understanding competition between species.     

Population extinction risks of three Neotropical small mammal species

The population persistence and extinction probabilities of three small mammal species were analyzed by estimating growth and extinction properties obtained from 10 years of live-trapping data at two different habitat types in semiarid Chile. We used a stochastic formulation with an exponential growth model known as a Wiener-drift process, out of which growth and extinction quantities were estimated. The rodent Phyllotis darwini showed the lowest rates of growth, and the lowest infinitesimal variances, whereas the opposite trend was found for the rodent Akodonolivaceus. The marsupial Thylamys elegans showed intermediate values for growth rates and infinitesimal variances. The rodent P. darwini showed the lowest extinction risk in the study site. We also detected spatial differences between mesic and xeric habitats in the growth rates of P. darwini and T. elegans, and in the extinction risks of the three species studied. Although the population growth of these three species can be approximated by purely stochastic processes, the introduction of density dependence through autoregressive log-linear models reduced the extinction times of all species analyzed. Received: 16 May 1997 / Accepted: 22 January 1998     

Phytophagous insect communities in the canopies of three Eucalyptus forest types in south-eastern Australia

Intensive sampling of tree canopies for phytophagous insects was carried out in three contrasting eucalypt forest types comprised of species widely distributed in sub-alpine forests in Victoria and New South Wales (Eucalyptus delegatensis, E. dives, and E. pauciflora). The number of phytophagous insects present in the canopies of these forest types was low, with a seasonal average of 20 individuals per kg of foliage (dry weight). Numbers were much lower than expected from past literature reporting‘chronically high’levels of defoliation in eucalypt forests. Microlepidoptera, Geometridae, Chrysomelidae, and Curculionidae were the major leaf-chewing groups recorded. Most sap-feeders were either leafhoppers (Cercopidae and Cicadellidae) or in the superfamily Fulgoroidea. Psyllidae and gall-making species were rare. Leafhoppers made up a very large portion of the phytophagous insect communities in each forest type, particularly in the E. dives forest. Microlepidoptera was the most commonly encountered defoliator group in all three forest types making up 33-44% of the total count. Non-phytophagous arthropods accounted for 44-48% of all individuals encountered. The density of insect defoliators was greater in the lower crown than upper crown. The E. dives canopy supported many more phytophagous insects per unit weight of foliage, as well as more per hectare, than the other two forest types. The greatest number of phytophagous species was also encountered in E. dives canopy. The E. delegatensis canopy supported the lowest number of phytophagous insects per unit weight of foliage as Well as numbers per hectare. Abundance of insect defoliators in the eucalypt forest types in this study was similar to published figures of insect defoliators in northern temperate forests.     

Contrasting life histories in neighbouring populations of a large mammal

Background

A fundamental life history question is how individuals should allocate resources to reproduction optimally over time (reproductive allocation). The reproductive restraint hypothesis predicts that reproductive effort (RE; the allocation of resources to current reproduction) should peak at prime-age, whilst the terminal investment hypothesis predicts that individuals should continue to invest more resources in reproduction throughout life, owing to an ever-decreasing residual reproductive value. There is evidence supporting both hypotheses in the scientific literature.

Methodology/Principal Findings

We used an uncommonly large, 38 year dataset on Alpine chamois (Rupicapra rupicapra) shot at various times during the rutting period to test these two hypotheses. We assumed that body mass loss in rutting males was strongly related to RE and, using a process-based approach, modelled how male relative mass loss rates varied with age. For different regions of our study area, we provide evidence consistent with different hypotheses for reproductive allocation. In sites where RE declined in older age, this appears to be strongly linked to declining body condition in old males. In this species, terminal investment may only occur in areas with lower rates of body mass senescence.

Conclusions/Significance

Our results show that patterns of reproductive allocation may be more plastic than previously thought. It appears that there is a continuum from downturns in RE at old age to terminal investment that can be manifest, even across adjacent populations. Our work identifies uncertainty in the relationship between reproductive restraint and a lack of competitive ability in older life (driven by body mass senescence); both could explain a decline in RE in old age and may be hard to disentangle in empirical data. We discuss a number of environmental and anthropogenic factors which could influence reproductive life histories, underlining that life history patterns should not be generalised across different populations.     

Species-specific traits predict genetic structure but not genetic diversity of three fragmented Afrotropical forest butterfly species

The Upper Guinean forests of Ghana, West Africa, are considered among the most threatened and fragmented in the world. Little is known about the genetic consequences of fragmentation on Ghana’s forest-associated species, but this genetic signature is generally expected to differ across species. We compared patterns of mtDNA cytochrome oxidase I (COI) variation of three Nymphalid forest butterfly species that differ with respect to their relative dispersibilities (Aterica galene: high habitat fidelity, low dispersal ability; Euphaedra medon: high habitat fidelity, strong dispersal ability; Gnophodes betsimena: relaxed habitat fidelity, low dispersal ability). Individuals were collected from two large forest reserves and five small sacred forest groves. Patterns of differentiation across species were broadly coincident with our predicted hierarchy of relative species dispersibility and suggested that genetic connectivity is most compromised by strict fidelity to forest habitat rather than by raw capacity for sustained flight. Connectivity was uncorrelated with geographic distance, but instead seemed best explained by urbanization and the sequential pattern of forest loss. Genetic diversity was dramatically different among species and not easily explained by either species-specific traits or effects of fragmentation. Aterica galene, the species most impacted by fragmentation, exhibited very high diversity, whereas G. betsimena, a broadly distributed, very common species, with relaxed habitat fidelity, was genetically depauperate. There was limited evidence of genetic erosion from the sacred groves despite these small forest patches accounting for less than 1–10 % of the total area of the forest reserves, which indicates these forest relics have high conservation value.     

Non-invasive genetic identification of small mammal species using real-time polymerase chain reaction

DNA identification of non-invasive samples is a potentially useful tool for monitoring small mammal species. Here we describe a novel method for identifying five small mammal species: wood mouse, bank vole, common shrew, pygmy shrew and water shrew. Species-specific real-time polymerase chain reaction primers were designed to amplify fragments of the mitochondrial cytochrome b gene from hair and scat samples. We also amplified nuclear DNA from scats, demonstrating their potential as a source of DNA for population genetic studies.     

Fluxes of elements in rain passing through forest canopies in south-eastern Australia

The elemental content of rainfall (bulk deposition), throughfall and stemflow was measured inPinus radiata D. Don andEucalyptus forests in Gippsland, Victoria. Accessions in rainfall (mg m^–2 year^–1) averaged: organic-C 551, NO₃ ^–-N 96, NH₄ ⁺-N 62, total-N 303, K⁺ 382, Na⁺ 2250, Ca²⁺ 1170, and Mg²⁺ 678. The mean pH of rainfall was 5.9. Concentrations of all elements were greater in throughfall than in rainfall, and generally greater in stemflow than in throughfall. However, pH of pine throughfall was higher than that of rainfall, and pH of eucalypt throughfall was lower than that of rainfall. There was a net efflux of inorganic-N from pine crowns to rainfall, whilst in eucalypts there was generally net sorption of inorganic-N from rainfall. In both species organic-N was leached from the crowns and the net efflux of total-N from eucalypt crowns (50 mg m^–2 year^–1) averaged one-quarter of that in pines. Increases in the organic-C content of throughfall relative to rainfall in eucalypts were two to four times those in pines. Increases in the content of other elements in throughfall were comparable in pines and eucalypts and within the ranges K⁺ 615–1360, Na⁺ 480–-1840, Ca²⁺ 123–780 and Mg²⁺ 253–993 mg m^–2 year^–1. However, enrichment of Ca²⁺ may have been due to dust trapped in the canopies. Stemflow contributed significantly to the total amounts of elements reaching the forest floor in water.     

Habitat separation of sympatric Microcebus spp. in the dry spiny forest of south-eastern Madagascar

We investigated whether or not habitat structure contributes to the separation of two sister species of lemurs and their hybrids. For this, we studied Microcebus murinus and M. griseorufus along a continuous vegetation gradient where populations of the two species occur in sympatry or in allopatry. In allopatry, the two species are generalists without any sign of microhabitat selectivity. In sympatry, both species differed significantly and discriminated against certain habitat structures: M. murinus was found in microhabitats with larger trees than average while M. griseorufus utilized microhabitats with smaller trees. Hybrids between the two species did not show any significant discrimination for or against microhabitat structure and did not differ in their habitat utilization from either parent species. Both species can go into torpor and hibernation. M. griseorufus is seen more frequently during the cool dry season than M. murinus. We assume that M. murinus goes into extended torpor or hibernation more frequently than M. griseorufus. We interpret the different occurrence of large-sized trees in microhabitats of M. murinus as a prerequisite for M. murinus to be able to spend extended periods of time in tree holes that are isolated and allow hibernation at reduced temperature levels.     

Differences in the life histories of twoCochlearia species

Cochlearia bavarica Vogt andC. pyrenaica Dc. are closely related and highly endangered species in Bavaria (SE Germany).Cochlearia bavarica (2n=36) is a hybrid ofC. pyrenaica (2n=12) andC. officianalis (2n=24) stabilized by polyploidy.Cochlearia officinalis does not occur in Bavaria. The question being addressed is whether the present non-overlapping distribution of the two Bavarian species, both of which are restricted to calcareous springs with a continuous water supply or drainage ditches, is due to competitive exclusion or to subtle differences of ecological requirements. I did not find any evidence for the second case, i.e. niche differentiation, because both species occurred in all the habitat types that I could define by floristic and ecological criteria. The population structures of bothC. bavarica andC. pyrenaica vary in parallel with different habitat types. Both species have the greatest reproductive output (viable seeds) and the highest population densities in habitats with high light availability and/or low interspecific competition. Thus, I expected that one of the two species might be competitively superior over the other, but that it would fail to reach all its potential sites of occurrence. Cochlearia bavarica individuals (dry mass =5.75 g) grow significantly larger thanC. pyrenaica individuals (3.62 g;P<0.05) and produce more, larger and heavier seeds, possibly due to hybrid vigour. Flowering individuals ofC. bavarica also allocate more biomass to vegetative structures thanC. pyrenaica. The analysis of population dynamics reveals a higher life expectancy and reproductive output inC. bavarica. The calculated population growth rates although negative over the observation period in both species, suggest a significantly higher fitness ofC. bavarica (λ=0.66) compared withC. pyrenaica (λ=0.44). Thus, our data are in line with the competitive exclusion hypothesis andCochlearia bavarica appears as an example of a species with hybridogenous origin possessing higher fitness than its progenitor. However, considering the rarity of both species it seems at present unlikely that the former will displace the latter over a large distributional region.     

Spatial genetic structure reflects extensive clonality,low genotypic diversity and habitat fragmentation in Grevillea renwickiana (Proteaceae), a rare,sterile shrub from south-eastern Australia

Background and Aims

The association of clonality, polyploidy and reduced fecundity has been identified as an extinction risk for clonal plants. Compromised sexual reproduction limits both their ability to adapt to new conditions and their capacity to disperse to more favourable environments. Grevillea renwickiana is a prostrate, putatively sterile shrub reliant on asexual reproduction. Dispersal is most likely limited by the rate of clonal expansion via rhizomes. The nine localized populations constituting this species provide an opportunity to examine the extent of clonality and spatial genotypic diversity to evaluate its evolutionary prospects.

Methods

Ten microsatellite loci were used to compare genetic and genotypic diversity across all sites with more intensive sampling at four locations (n = 185). The spatial distribution of genotypes and chloroplast DNA haplotypes based on the trnQ–rps16 intergenic spacer region were compared. Chromosome counts provided a basis for examining genetic profiles inconsistent with diploidy.

Key Results

Microsatellite analysis identified 46 multilocus genotypes (MLGs) in eight multilocus clonal lineages (MLLs). MLLs are not shared among sites, with two exceptions. Spatial autocorrelation was significant to 1·6 km. Genotypic richness ranged from 0 to 0·33. Somatic mutation is likely to contribute to minor variation between MLGs within clonal lineages. The eight chloroplast haplotypes identified were correlated with eight MLLs defined by ordination and generally restricted to single populations. Triploidy is the most likely reason for tri-allelic patterns.

Conclusions

Grevillea renwickiana comprises few genetic individuals. Sterility has most likely been induced by triploidy. Extensive lateral suckering in long-lived sterile clones facilitates the accumulation of somatic mutations, which contribute to the measured genetic diversity. Genetic conservation value may not be a function of population size. Despite facing evolutionary stagnation, sterile clonal species can play a vital role in mitigating ecological instability as floras respond to rapid environmental change.     

Detection and visualization of spatial genetic structure in continuous Eucalyptus globulus forest

Visualizing the pattern of variation using microsatellites within a Eucalyptus globulus forest on the island of Tasmania provided surprising insights into the complex nature of the fine-scale spatial genetic structure that resides in these forests. We used spatial autocorrelation and principal coordinate analysis to compare fine-scale genetic structure between juvenile and mature cohorts in a study area, 140 m in diameter, located within a typical, continuous E. globulus forest. In total, 115 juvenile and 168 mature individuals were genotyped with eight highly polymorphic microsatellite loci. There was no significant difference in the level of genetic diversity between cohorts. However, there were differences in the spatial distribution of the genetic variation. Autocorrelation analysis provided clear evidence for significant spatial genetic structure in the mature cohort and significant, but weaker, structure in the juvenile cohort. The spatial interpolation of principal coordinate axes, derived from ordination of the genetic distance matrix between individuals, revealed a spatially coherent family group which was evident in both cohorts. Direct comparison of the genetic structure within each cohort allowed visualization of a shift in the spatial distribution of genetic variation within the population of approximately 10 m. As the shift coincided with the direction of prevailing winds, it is hypothesized that this phenomenon is due to downwind dispersal of seeds and is indicative of the important role of prevailing winds in forcing eastward gene flow in these high-latitude forests.     

Population dynamics of small mammal species in urbanized areas

Population dynamics of small mammals was monitored in urbanized forest ecosystems on a long-term basis. Urban rodent communities had higher densities due to a large proportion of hemisynanthropic species of Apodemus (Sylvemus) genus. It was found that small mammals displayed similar population dynamics in the park-forests in the same type of forest, but the pattern broke down in the city. Urban stress proved to have a stronger influence on the structure and population dynamics of small mammals than site conditions. Transformation of lower plant layers disturbs habitat of some species and creates favorable conditions for others. Increasing species richness and thickness of shrub layer make site conditions more favorable for the wood mouse and the field mouse—species that do not normally inhabit coniferous forests.     

Seed dispersal of three sympatric oak species by forest rodents in the Qinling Mountains, Central China

Forest rodents play an essential role as seed dispersal vectors through their caching behaviors. Using seeds of Quercus aliena, Q. glandulifera, and Cyclobalanopsis engleriana (Fagaceae), which are dominant, but poorly studied species, in the Qinling Mountains, Central China, we investigated seed predation and dispersal by forest rodents in 2010 and 2011. There were significant differences in rodent seed-eating and caching strategies among the three tree species. Seeds of Q. aliena and C. engleriana had hard coats, high nutrition contents (e.g., protein, fat, and starch), and long germination schedules (C. engleriana only). They were less frequently eaten in situ, but more likely to be eaten after removal or cached. Seeds of Q. glandulifera had soft coats and low nutrition contents and were more often eaten in situ and less likely to be eaten after removal or cached. Our findings indicated that forest rodents were primarily responsible for seed predation and dispersal of these three tree species in the Qinling Mountains, and seed traits, especially coat hardness, nutrition content, and germination schedule, were important factors influencing rodent eating and caching behaviors. In addition, seed dispersal process of each tree species differed significantly between the 2 years, reflecting the effect of mast seeding on the eating and caching strategies of forest rodents.