Food selection in <Emphasis Type="Italic">Eucypris virens</Emphasis> (Crustacea: Ostracoda) under experimental conditions

Identification of sources of nutrient pollution is a first step towards remediation of eutrophication in aquatic ecosystems. The stable isotope nitrogen-15 (¹⁵N) is a natural indicator of nitrogen (N) source and biogeochemistry. We sampled Lake Taihu, a hyper-eutrophic lake in eastern China, and major inflow rivers during winter and spring of 2004 to determine concentration and δ¹⁵N of nitrate (NO ₃ ⁻ ). Nitrate concentrations in rivers and the lake were higher, in most cases, in spring than in winter. δ¹⁵N of NO ₃ ⁻ was not correlated with NO ₃ ⁻ concentration, indicating that concentrations alone are insufficient to describe N sources. Results show that riverine N inputs in winter are influenced by discharge of human sewage into rivers and the lake. In spring, however, wastewater inputs to the lake appear to be balanced by fertilizers, atmospheric, and/or N₂ fixation sources. Rain NO ₃ ⁻ concentrations were seasonally high and isotopically enriched compared to potential sources, indicating that rain may be a significant or even dominant source of N to the lake during the rainy season. δ¹⁵N values show that urbanized areas of the lake have more sewage-derived N than those areas dominated by agriculture, aquaculture, or industry. This observation has important implications for human health, since Lake Taihu is a source of drinking and irrigation water as well as fish for human consumption.     

Environment determines nitrogen content and stable isotope composition in the sporophyte of <Emphasis Type="Italic">Undaria pinnatifida</Emphasis> (Harvey) Suringar

Nitrogen content and δ¹⁵N (nitrogen stable isotope ratio) were measured in different parts of the sporophyte of Undaria pinnatifida (Harvey) Suringar from two bays in the northeastern Japan. There were clear differences between the thalli collected in winter and in summer: high nitrogen content and low average δ¹⁵N were observed for the thalli collected in winter, while the opposite pattern was found for the thalli from summer. In addition, the pattern of internal δ¹⁵N distribution in the thallus changed with season. It is possible that the cause for these seasonal differences in the algae was the seasonal change in environmental conditions, because in winter water is normally rich in nitrogen, while in summer it is poor. U. pinnatifida sporophyte may be useful as an indicator of nitrogen sources in coastal waters, but consideration must be given to the effect of isotope fractionation on δ¹⁵N of the plant, especially in winter. Potential may exist for the use of different parts of the thallus to indicate nitrogen sources at different periods, but more investigation is necessary to accomplish this.     

Transfer of the chromosomally encoded tetracycline resistance gene <Emphasis Type="Italic">tet</Emphasis>(M) from marine bacteria to <Emphasis Type="Italic">Escherichia coli</Emphasis> and <Emphasis Type="Italic">Enterococcus faecalis</Emphasis>

The transferability of the tetracycline (TC) resistance gene tet(M) from marine bacteria to human enteric bacteria was examined by a filter-mating method. Vibrio spp., Lactococcus garvieae, Bacillus spp., Lactobacillus sp., and Paenibacillus sp. were used as donors, and Escherichia coli JM109 and Enterococcus faecalis JH2-2 were used as recipients. The combination of Vibrio spp. and E. coli resulted in 5/68 positive transconjugants with a transfer rate of 10⁻⁷ to 10⁻³; however, no transfer was observed with E. faecalis. In case of L. garvieae and E. faecalis, 6/6 positive transconjugants were obtained with a transfer rate of 10⁻⁶ to 10⁻⁵; however, no transfer was observed with E. coli. The tet(M) gene of Bacillus, Lactobacillus, and Paenibacillus were not transferred to either E. coli or E. faecalis. tet(M) transfer was confirmed in positive E. coli and E. faecalis transconjugants by polymerase chain reaction (PCR) and Southern hybridization. All the donor strains did not harbor plasmids, while they all harbored transposon Tn916. In the transconjugants, the transposon was not detected by PCR, suggesting the possible transfer of tet(M) from the marine bacterial chromosome to the recipient chromosome. This is the first report to show that tet(M) can be transferred from marine bacteria to human enteric bacteria in a species-specific manner.     

Determination of nitrogen fixation effectiveness in selected <Emphasis Type="Italic">Medicago truncatula</Emphasis> isolates by measuring nitrogen isotope incorporation into pheophytin

Effectiveness is a term used to describe the input that a bacterial nitrogen-fixing symbiosis makes to plant nitrogen metabolism. In legumes, effectiveness is considered a polymorphic trait where specific interactions between the plant and symbiotic rhizobia contribute to the success of the interaction. Evaluation of effectiveness using model legumes like Medicago truncatula may open new avenues for genetic studies. In previous work, an isotope dilution mass spectrometry method, which uses the effect of nitrogen fixation on the nitrogen isotope composition of chlorophyll in plants grown on ¹⁵N fertilizer as a measure of effectiveness, was developed for estimating the contribution of symbiotic nitrogen fixation to plant nitrogen content. This ¹⁵N-dilution assay was used to evaluate the level of nitrogen fixation effectiveness in three Medicago truncatula lines that have been used as parents in generating recombinant inbred lines. Three Sinorhizobium meliloti strains, USDA 1600, 102F51 and MK506, differ in this measure of effectiveness on three lines of M. truncatula: Jemalong A17, DZA315.16 and F83005.5. Plant–rhizobia combinations grown in two different conditions showed comparable differences in effectiveness.     

Population genetic structure and colony breeding system in dampwood termites (<Emphasis Type="Italic">Zootermopsis angusticollis</Emphasis> and <Emphasis Type="Italic">Z. nevadensis nuttingi</Emphasis>)

Studies describing the population genetic structure and breeding system of basal lineages of termite species remain rare. Such species, however, may reveal ancestral life history attributes potentially influential in the evolution of social life within the Isoptera. Through the development and application of microsatellite DNA loci, we investigated patterns of genetic diversity and differentiation within the dampwood termite Zootermopsis angusticollis collected from three geographically distinct locations in California, USA. Significant genetic differentiation was identified among all sites, which were located 40–150 km apart, and each site was found to represent unique populations with limited levels of gene flow. While Z. angusticollis alates have previously been described as being strong fliers, genetic evidence suggests limited dispersal, possibly due to habitat characteristics restricting long-range flights. Additionally, we characterize patterns of colony genetic structure and breeding system within both Z. angusticollis and its congener Z. nevadensis nuttingi. In Z. angusticollis, simple, extended, and mixed family colonies were observed. The frequency of simple families ranged from 16 to 64%, whereas mixed families were found in only two locations and at low frequencies. In contrast, Z. n. nuttingi, formed primarily extended family colonies. Estimates of relatedness suggest that monogamous pairs heading simple families consist of reproductives showing variable degrees of relatedness from unrelated to close relatives. Additionally, the effective number of neotenic reproductives appears to be low within extended families of both species.     

Characterization of the <Emphasis Type="Italic">codY</Emphasis> gene and its influence on biofilm formation in <Emphasis Type="Italic">Bacillus </Emphasis><Emphasis Type="Italic">cereus</Emphasis>

The foodborne pathogen Bacillus cereus can form biofilms on various food contact surfaces, leading to contamination of food products. To study the mechanisms of biofilm formation by B. cereus, a Tn5401 library was generated from strain UW101C. Eight thousand mutants were screened in EPS, a low nutrient medium. One mutant (M124), with a disruption in codY, developed fourfold less biofilm than the wild-type, and its defective biofilm phenotype was rescued by complementation. Addition of 0.1% casamino acids to EPS prolonged the duration of biofilms in the wild-type but not codY mutant. When decoyinine, a GTP synthesis inhibitor, was added to EPS, biofilm formation was decreased in the wild-type but not the mutant. The codY mutant produced three times higher protease activity than the wild-type. Zymogram and SDS-PAGE data showed that production of the protease (∼130 kDa) was repressed by CodY. Addition of proteinase K to EPS decreased biofilm formation by the wild-type. Using a dpp-lacZ fusion reporter system, it was shown that that the B. cereus CodY can sense amino acids and GTP levels. These data suggest that by responding to amino acids and intracellular GTP levels CodY represses production of an unknown protease and is involved in biofilm formation.     

The influence of increased temperature and carbon dioxide levels on the benthic/sea ice diatom <Emphasis Type="Italic">Navicula</Emphasis><Emphasis Type="Italic">directa</Emphasis>

Polar oceans are very susceptible to increased levels of atmospheric CO₂ and may act as the world’s largest sink for anthropogenic CO₂. Simultaneously, as atmospheric CO₂ increases, sea surface temperature rises due to global warming. These two factors are important in regulating microalgal ecophysiology, and it has been suggested that future global changes may significantly alter phytoplankton species composition. This study aims to investigate potential consequences of global change in terms of increased temperature and CO₂ enrichment on the benthic/sea ice diatom Navicula directa. In a laboratory experiment, the physiological response to elevated temperature and partial pressure of CO₂ (pCO₂) was investigated in terms of growth, photosynthetic activity and photosynthetic pigment composition. The experiment was performed under manipulated levels of pCO₂ (380 and 960 ppm) and temperature (0.5 and 4.5°C) to simulate a change from present levels to predicted levels during a worst-case scenario by the year 2100. After 7 days of treatment, no synergetic effects between temperature and pCO₂ were detected. However, elevated temperature promoted effective quantum yield of photosynthesis (∆F/F￠_m F^\prime_{\rm m} ) and increased growth rates by approximately 43%. Increased temperature also resulted in an altered pigment composition. In addition, enrichment of CO₂ appeared to reduce specific growth rates of N. directa. Even though growth rates were only reduced by approximately 5%, we hereby report that increased pCO₂ levels might also have potential negative effects on certain diatom strains.     

Impact of the Fe(III)-reducing bacteria <Emphasis Type="Italic">Geobacter sulfurreducens</Emphasis> and <Emphasis Type="Italic">Shewanella oneidensis</Emphasis> on the speciation of plutonium

Microbial bioreduction of radionuclides has been the subject of much recent interest, in particular as a method for the in situ bioremediation of uranium contaminated sites. However, there have been very few studies investigating the microbially mediated redox transformations of plutonium. The redox chemistry of Pu is complicated, but the dominant environmental oxidation state is insoluble Pu(IV). However, microbial reduction of Pu(IV) to more soluble Pu(III) may enhance migration of Pu in the environment. In this study we investigated the effect of two model metal-reducing bacteria, Geobacter sulfurreducens and Shewanella oneidensis, on the redox speciation of Pu. Our results show that in all cases, the presence of bacterial cells enhanced removal of Pu from solution. UV/Visible spectra of cells and precipitates formed (dissolved in 1 M HCl), showed that the sorbed and precipitated Pu was mainly Pu(IV), but Pu(III) was also present. The results suggest that the mechanism of interaction between Pu(IV) and the two microorganisms is initial sorption to the cell surface, followed by slow reduction. Although both bacteria could reduce Pu(IV) to Pu(III), there was no increase in the solution concentrations of Pu. This suggests that the potential reduction of sorbed Pu(IV) in sediments that have been stimulated to bioremediate U(VI) may not result in problematic mobilization of Pu(III).     

Geographic variation in malarial parasite lineages in the common yellowthroat (<Emphasis Type="Italic">Geothlypis trichas</Emphasis>)

Our current understanding of migration routes of many birds is limited and researchers have employed various methods to determine migratory patterns. Recently, parasites have been used to track migratory birds. The objective of this study was to determine whether haemosporidian parasite lineages detect significant geographic structure in common yellowthroats (Geothlypis trichas). We examined liver tissue or blood from 552 birds sampled from multiple locations throughout the continental United States, southern Canada, and the Bahamas. We found a 52.7% overall prevalence of haematozoan infection. We identified 86.1% of these infections to genus: 81% were Plasmodium; 5% were Haemoproteus; and 0.1% were Leucocytozoon. There were significant differences in the prevalence of different parasite genera among regions (χ² = 36.82, P < 0.0001) and in the proportion of Plasmodium infections versus other parasites among regions (χ² = 35.52, P < 0.0001). Sequence information identified three Haemoproteus lineages, two Leucocytozoon lineages, and thirteen Plasmodium lineages. Due to the low number of Haemoproteus and Leucocytozoon, only Plasmodium lineages were used in the geographic comparison of lineages. Six Plasmodium lineages were found in eight or more birds and the prevalence of these varied significantly among regions (χ² = 172.33, P < 0.0001). Additionally, 45 juvenile birds were sampled to determine what parasites could be obtained in the breeding grounds and we found only one lineage. In conclusion, parasite lineages show some geographic structure, with some lineages being more geographically specific than others, but are not useful for determining migratory connectivity in this species. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. The U.S. Government’s right to retain a non-exclusive, royalty-free license in and to any copyright is acknowledged.     

Occurrence of sea eels of <Emphasis Type="Italic">Anguilla japonica</Emphasis> along the Sanriku Coast of Japan

 The age and migratory history of the Japanese eel, Anguilla japonica, collected along the Sanriku Coast of Japan, were examined using otolith microstructure and analysis of strontium (Sr) and calcium (Ca) concentrations. The mean Sr : Ca ratios from the elver mark to the otolith edge indicated that there were eels with several general categories of migratory history, including sea eels that never entered freshwater and others which had entered freshwater for brief periods but returned to the estuary or bay. This first evidence of the occurrence of sea eels in this northern area indicates that Japanese eels of the Sanriku Coast do not necessarily migrate into freshwater rivers. Received: May 15, 2002 / Revised: August 4, 2002 / Accepted: August 15, 2002 Acknowledgments We thank Messrs. S. Yamane and K. Morita, and crews of the Otsuchi Marine Research Center, Ocean Research Institute, The University of Tokyo, for their assistance in collecting the eels. This work was supported in part by Grant-in-Aid No. 13760138 from the Ministry of Education, Culture, Sports, Science and Technology, Japan. Correspondence to:Takaomi Arai     

Using stable isotopes to assess carbon and nitrogen turnover in the Arctic sympagic amphipod <Emphasis Type="Italic">Onisimus litoralis</Emphasis>

Food web studies based on stable C and N isotope ratios usually assume isotopic equilibrium between a consumer and its diet. In the Arctic, strong seasonality in food availability often leads to diet switching, resulting in a consumer’s isotopic composition to be in flux between different food sources. Experimental work investigating the time course and dynamics of isotopic change in Arctic fauna has been lacking, although these data are crucial for accurate interpretation of food web relationships. We investigated seasonal (ice-covered spring vs. ice-free summer) and temperature (1 vs. 4°C) effects on growth and stable C and N isotopic change in the common nearshore Arctic amphipod Onisimus litoralis following a diet switch and while fasting in the laboratory. In spring we found no significant temperature effect on N turnover [half-life (HL) estimates: HL-N = 20.4 at 4°C, 22.4 days at 1°C] and a nonsignificant trend for faster growth and C turnover at the higher temperature (HL-C = 13.9 at 4°C, 18.7 days at 1°C). A strong seasonal effect was found, with significantly slower growth and C and N turnover in the ice-free summer period (HL-N = 115.5 days, HL-C = 77.0 days). Contrary to previous studies, metabolic processes rather than growth accounted for most of the change in C and N isotopic composition (84–89 and 67–77%, respectively). This study provides the first isotopic change and metabolic turnover rates for an Arctic marine invertebrate and demonstrates the risk of generalizing turnover rates based on taxon, physiology, and environment. Our results highlight the importance of experimental work to determine turnover rates for species of interest.     

Nitrogen sink strength of ectomycorrhizal morphotypes of <Emphasis Type="Italic">Quercus douglasii</Emphasis>, <Emphasis Type="Italic">Q. garryana</Emphasis>, and <Emphasis Type="Italic">Q. agrifolia</Emphasis> seedlings grown in a northern California oak woodland

Little information is known on what the magnitude of nitrogen (N) processed by ectomycorrhizal (ECM) fungal species in the field. In a common garden experiment performed in a northern California oak woodland, we investigated transfer of nitrogen applied as ¹⁵NH₄ or ¹⁵NO₃ from leaves to ectomycorrhizal roots of three oak species, Quercus agrifolia, Q. douglasii, and Q. garryana. Oak seedlings formed five common ectomycorrhizal morphotypes on root tips. Mycorrhizal tips were more enriched in ¹⁵N than fine roots. N transfer was greater to the less common morphotypes than to the more common types. ¹⁵N transfer from leaves to roots was greater when , not , was supplied. ¹⁵N transfer to roots was greater in seedlings of Q. agrifolia than in Q. douglasii and Q. garryana. Differential N transfer to ectomycorrhizal root tips suggests that ectomycorrhizal morphotypes can influence flows of N from leaves to roots and that mycorrhizal diversity may influence the total N requirement of plants.     

Cloning and characterization of the inulinase gene from a marine yeast <Emphasis Type="Italic">Pichia guilliermondii</Emphasis> and its expression in <Emphasis Type="Italic">Pichia pastoris</Emphasis>

The extracellular inulinase structural gene was isolated from the genomic DNA of the marine yeast Pichia guilliermondii strain 1 by PCR. The gene had an open reading frame of 1,542 bp long encoding an inulinase. The coding region of the gene was not interrupted by any intron. It encoded 514 amino acid residues of a protein with a putative signal peptide of 18 amino acids and the calculated molecular mass of 58.04 kDa. The protein sequence deduced from the inulinase structural gene contained the inulinase consensus sequences (WMNXPNGL) and (RDPKVF). It also had ten conserved putative N-glycosylation sites. The inulinase from P. guilliermondii strain 1 was found to be closely related to that from Kluyveromyces marxianus. The inulinase gene without the signal sequence was subcloned into pPICZαA expression vector and expressed in Pichia pastoris X-33. The expressed fusion protein was analyzed by SDS-PAGE and western blotting and a specific band with molecular mass of about 60 kDa was found. Enzyme activity assay verified the recombinant protein as an inulinase. A maximum activity of 58.7 ± 0.12 U/ml was obtained from the culture supernatant of P. pastoris X-33 harboring the inulinase gene. A large amount of monosaccharides, disaccharides and oligosaccharides were detected after the hydrolysis of inulin with the crude recombinant inulinase.     

Steroid Compounds from Far Eastern Starfishes <Emphasis Type="Italic">Henricia aspera</Emphasis> and <Emphasis Type="Italic">H. tumida</Emphasis>

Six new natural compounds were isolated from two Far Eastern starfish species, Henricia aspera and H. tumida, collected in the Sea of Okhotsk. Two new glycosylated steroid polyols were obtained from H. aspera: asperoside A and asperoside B, which were shown to be (20R,24R, 25S)-3-O-(2,3-di-O-methyl-β -D-xylopyranosyl)-24-methyl-5α-cholest-4-ene-3β, 6β,8,15α,16β,26-hexaol and (20R, 24R,25S,22E)-3-O-(2,4-di-O-methyl-β-D-xylopyranosyl)-24-methyl-5α-cholest-22-ene-3β,4β,6β,8,15α,26-hexaol, respectively. Two other glycosylated polyols, tumidoside A, with the structure elucidated as (20R, 22E)-3-O-(2,4-di-O-methyl-β -D-xylopyranosyl)-26,27-dinor-24-methyl-5α-cholest-22-ene-3β,4β,6β,8,15α,25-hexaol, and tumidoside B, whose structure was elucidated as (20R,24S)-3-O-(2,3-di-O-methyl-β-D-xylopyranosyl)-5α-cholestan-3β,4β,6β,8,15α,24-hexaol, were isolated from the two starfish species. (20R, 24S)-5α-Cholestan-3β,6β,15α,24-tetraol and (20R, 24S)-5α-cholestan-3β,6β,8,15α,24-pentaol were identified only in H. tumida. The known monoglycosides henricioside H1 and laeviuscolosides H and G were also identified in both species.     

Culture-independent nested PCR method reveals high diversity of actinobacteria associated with the marine sponges <Emphasis Type="Italic">Hymeniacidon perleve</Emphasis> and <Emphasis Type="Italic">Sponge</Emphasis> sp.

A culture-independent nested polymerase chain reaction (PCR) technique was used to investigate the diversity of actinobacteria communities associated with the sponges Hymeniacidon perleve and Sponge sp. The phylogenetic affiliation of sponge-derived actinobacteria was then assessed by 16S rRNA sequencing of cloned DNA fragments. A total of 196 positive clones were screened by restriction fragment length polymorphism (RFLP) analysis; 48 unique operational taxonomic units (OTUs) were selected for sequencing. Rarefaction analysis indicated that the clone libraries represented 93% and 94% of the total estimated diversity for the two species, respectively. Phylogenetic analysis of sequence data revealed representatives of various phylogenetic divisions, which were related to the following ten actinobacterial genera: Acidimicrobium, Corynebacterium, Propionibacterium, Actinomyces, Micrococcus, Microbacterium, Streptomyces, Mycobacterium, Cellulosimicrobium, Sporichthya, and unidentified actinobacterial clones. A sponge-specific, previously uncultured actinobacteria community grouped within the subclass Acidimicrobidae was discovered from both H. perleve and Sponge sp. Sequences belonging to Acidimicrobium in the H. perleve and the Sponge sp. clone libraries represented 33% and 24% of the clones, respectively. In the Sponge sp. clone library Mycobacterium dominated, accounting for 70% of all clones. The presence of Acidimicrobium and mycobacteria within two sponges can lay the groundwork for attempts to culture these interesting bacteria for industrial applications.     

Water-use efficiency and carbon isotope discrimination of <Emphasis Type="Italic">Acacia ampliceps</Emphasis> and <Emphasis Type="Italic">Eucalyptus camaldulensis</Emphasis> at different soil moisture regimes under semi-arid conditions

Acacia ampliceps Maslin and Eucalyptus camaldulensis Dehnh. were grown for one year in lysimeters at three soil moisture regimes: 100 % (well-watered), 75 % (medium-watered) and 50 % (low-watered) of total plant available water. Biomass yield of both species increased with increase in soil moisture. Water-use efficiency (WUE) of E. camaldulensis decreased and that of A. ampliceps increased markedly with decrease in available soil moisture. A. ampliceps showed 4 – 5 times more biomass yield than E. camaldulensis grown at similar soil moisture. A. ampliceps showed almost 5, 9 and 12 times higher WUE than E. camaldulensis under low-, medium- and well-watered treatments, respectively. Significant negative correlation of ¹³C with WUE (r = –0.99) was observed in A. ampliceps. In contrast, ¹³C of E. camaldulensis showed a significant positive correlation with WUE (r = 0.82).     

Biosynthesis of secreted ribonucleases of <Emphasis Type="Italic">Bacillus intermedius</Emphasis> and <Emphasis Type="Italic">Bacillus circulans</Emphasis> under nitrogen starvation

The level of biosynthesis of secreted guanyl-specific ribonucleases (RNases) of Bacillus intermedius (binases) and Bacillus circulans (RNases Bci) by recombinant B. subtilis strains increases under nitrogen starvation. The promoter of the binase gene carries the sequences homologous to the recognition sites of the regulatory protein TnrA, which regulates gene expression under growth limitation by nitrogen. Using the B. subtilis strain defective in protein TnrA, it has been shown that the regulatory protein TnrA is involved in the regulation of expression of the binase gene and the gene of RNase Bci. The TnrA regulation of expression of the RNase Bci gene is indirect, probably by means of the regulatory protein PucR. Thus, it has been established that at least two regulatory mechanisms activate the expression of the genes encoding the secreted RNases of spore-forming bacteria: a system of proteins homologous to the B. subtilis PhoP-PhoR, and regulation by a protein similar to the B. subtilis TnrA regulatory protein.     

<Emphasis Type="Italic">Interleukin13</Emphasis> haplotypes and susceptibility of Iranian women to breast cancer

Interleukin-13 (IL-13) is a TH2 cytokine with direct and indirect immunoregulatory functions on cancer cells. The cytokine has been reported to have some polymorphic variations at the gene level associated with some immune related diseases including asthma and allergy. In the present study, association of three IL13 gene polymorphisms at positions −1512 A/C and −1055 C/T in the promoter and +2044 G/A in exon-4 was investigated in Iranian women with breast cancer and healthy controls. Genotyping of IL13 gene polymorphisms were performed by PCR–RFLP methods. Serum level of IL-13 was assessed by ELISA. Haplotypes were constructed from genotypic data using Arlequin 3.1 software package. Haplotype analysis revealed higher frequency of a three-locus haplotype, ACA (−1512A/−1055C/+2044A), in normal women than breast cancer patients (P < 0.025). Haplotype CCA, from the other hand, was observed with more frequency among patients than controls (P < 0.03). No statistically significant differences were found in the frequency of genotypes and alleles between patients and control group. No association was observed between investigated genotypes and other prognostic factors including tumor type, lymph node involvement and tumor size. IL-13 serum level was undetectable in both patients and control subjects. Despite observing no association between breast cancer and the single SNPs, results of this investigation suggest that the presence of CCA haplotype of IL13 gene may be associated with susceptibility of Iranian women to breast cancer.     

Identification of bacteria and yeasts from <Emphasis Type="Italic">in vitro</Emphasis> and surface-sterilized field samples of <Emphasis Type="Italic">Ensete ventricosum</Emphasis> by rDNA analysis

Bacterial and fungal contaminants of enset (Ensete ventricosum) cultures and microbes associated with surface-sterilized field material were identified by 16S/26S rDNA sequencing. Ten bacterial species were identified in 16 isolates from in vitro cultures and seven in 10 isolates from field clones. Three yeast species and one filamentous fungus were recorded as in vitro contaminants, whereas five yeast species were isolated from the field material. The bacterium, Pseudomonas reactans (6 isolates), and the yeast, Torulaspora delbrueckii (8 isolates), were the most frequent in vitro contaminants. Most of the bacterial species isolated from in vitro enset were Gram-positive and hitherto unrecorded as in vitro contaminants. The difficulty in controlling the in vitro contaminants is due to their apparent endogenous nature and their resistance to antimicrobial drugs.