Respiratory measurements of unsedated small laboratory mammals using nonrebreathing valves

The respiratory frequency, tidal volume, minute volume, oxygen uptake and carbon dioxide output of unsedated hamsters, rats, guinea pigs and rabbits were measured to obtain comparative data and to evaluate the performance of those species as unsedated subjects. The animals were trained to remain stationary and breathe through nonrebreathing valves while expired gas was collected and respiratory frequency was monitored. Measurements of dogs also were conducted to obtained comparative data by similar methods. Hamsters were readily trained and performed reliably during repeated trials. Rats and guinea pigs were more difficult to train and performed erratically. The rabbits' performance was intermediate between that of hamsters and the other species. The back pressures caused by the small animal nonrebreathing valves at estimated peak flow rates were either similar to or less than those encountered by dogs. Measured respiratory values were compared to values predicted by published equations based on body weight. Data from this study generally reflected species differences related to body weight and metabolic rate similar to those predicted by the equations, but values from the four smaller species also may have reflected differences related to behavior.     

What the hen can tell about her eggs: egg development on the basis of energy budgets

By a simple model involving the state variables size and storage, it is possible to describe a wide variety of observations on the feeding, growth, energy storage and reproduction of animals. The model is based on the assumption that reproduction, growth as well as maintenance depend on the stored energy only and not directly on feeding. If an egg is thought of as a non-feeding animal, the model predicts the respiration ontogeny and growth of the embryo inside the egg. These predictions seem to hold well for published data on the development of eggs of fish and ratite, precocial and altricial birds. The latter two are known to follow different respiration ontogenies, but both are described well, differing only in one (compound) parameter value. The model explains why the incubation times of eggs of different species tend to increase linearly with egg size to the power 1/4, and why kiwis and petrels, which lay relatively large eggs, have to brood them much longer than larger birds with eggs of the same size. Conversely, it explains why the small eggs of the (parasitic) European cuckoo, hatch earlier than the still smaller eggs of their tiny hosts.Furthermore, it has been shown how the maintenance rate constant, which frequently appears in the microbial literature, can be obtained from measurements on the respiration and weight ontogeny in embryos, so linking independent lines of research. Application of the model shows an increase of the maintenance rate constant from bacteria, crustaceans, up to fish and birds, and a decrease from bacteria to green algae, suggesting lines of evolutionary development.     

Plasma ferritin and other parameters related to iron metabolism in piglets

The evolution of mean plasma ferritin values, hematocrit, hemoglobin, plasma iron concentration and total plasma iron binding capacity were studied during the growth of piglets from 0 to 50 days. The results obtained point to a massive mobilization of iron from storage sites during the second and third weeks of life of these animals. Apart from plasma ferritin values and the total plasma iron binding capacity, the coefficient of utilization may be considered as another parameter to be taken into account upon evaluating iron deposits in piglets.     

A new mathematical model for combining growth and energy intake in animals: The case of the growing pig

A simultaneous model for analysis of net energy intake and growth curves is presented, viewing the animal's responses as a two dimensional outcome. The model is derived from four assumptions: (1) the intake is a quadratic function of metabolic weight; (2) the rate of body energy accretion represents the difference between intake and maintenance; (3) the relationship between body weight and body energy is allometric and (4) animal intrinsic variability affects the outcomes so the intake and growth trajectories are realizations of a stochastic process. Data on cumulated net energy intake and body weight measurements registered from weaning to maturity were available for 13 pigs. The model was fitted separately to 13 datasets. Furthermore, slaughter data obtained from 170 littermates was available for validation of the model. The parameters of the model were estimated by maximum likelihood within a stochastic state space model framework where a transform-both-sides approach was adopted to obtain constant variance. A suitable autocorrelation structure was generated by the stochastic process formulation. The pigs’ capacity for intake and growth were quantified by eight parameters: body weight at maximum rate of intake (149-281 kg); maximum rate of intake (25.7-35.7 MJ/day); metabolic body size exponent (fixed: 0.75); the daily maintenance requirement per kg metabolic body size (0.232-0.303 MJ/(day×kg^0.75)); reciprocal scaled energy density ; a dimensional exponent, θ₆ (0.730-0.867); coefficient for animal intrinsic variability in intake (0.120-0.248 MJ^0.5) and coefficient for animal intrinsic variability in growth (0.029-0.065 kg^0.5). Model parameter values for maintenance requirements and body energy gains were in good agreement with those obtained from slaughter data. In conclusion, the model provides biologically relevant parameter values, which cannot be derived by traditional analysis of growth and energy intake data.     

A new functional model for estimating the maximum amount of invertebrate food consumed per day by brown trout, Salmo trutta

1. A model developed over 20 years ago has been used to estimate daily food intake in brown trout living in streams and lakes over a wide geographical range. The chief disadvantages of this early model are that it is not continuous and requires twelve parameters, not all of which can be interpreted biologically. A new model, using a larger data set, was therefore developed to overcome these problems and estimate the mean daily energy intake. 2. The two data sets used to develop the original model were also used to develop the general form of the new one, but a third data set was used to specify the model more precisely and to estimate the parameters. This third data set originated from experiments in which 185 trout (live weight range 1–350 g) were kept individually at 19 constant temperatures (range 3.8–21.7 °C) usually for 5–6 weeks. They were fed freshly killed shrimps (Gammarus pulex) and their food consumption was recorded throughout each experiment. 3. Five, six and eight parameter versions of the new model were all excellent fits to the data (P < 0.001, R² > 0.99), with the eight parameter version being slightly the best. All parameters can be interpreted in biological terms; three define threshold temperatures, three define the curvilinear slopes in the model over different temperature ranges, one is a weight exponent and one is the maximum daily energy intake of a 1 g trout. The simpler six parameter model was adequate at temperatures above 7 °C. 4. An additional experiment with twenty-eight trout feeding on six different invertebrate foods provided estimates of energy intake that were very similar to those predicted from the model. However, when daily intake was converted to dry weight, agreement with values from the model (also as dry weight) was poor. Possible reasons for this are discussed, as are other studies using the earlier model, and it is shown that different conclusions can be reached depending upon whether comparisons are based on units of energy, dry weight or wet weight.     

怀槐细胞悬浮培养的结构化动力学模型

为探明怀槐细胞生长、异黄酮染料木素合成与底物消耗间的关系,建立了怀槐细胞悬浮培养的结构化动力学模型。模型预测分析了胞内外的蔗糖代谢、胞内结构组分变化、胞内中间组分的变化、细胞呼吸损失以及胞内外异黄酮染料木素的合成情况。模型各参数灵敏度的分析表明kb1、kb2和kp是最为灵敏的参数,其调节10%时,目标函数变化的最大比例分别达12.8%、4.61%和2.54%,其它参数对目标函数变化的影响均小于0.5%。该模型预测值与实验值具有较好的吻合性。     

A dynamic energy budget model: parameterisation and application to the Pacific oyster Crassostrea gigas in New Zealand waters

A dynamic energy budget (DEB) model was developed and applied to the Pacific oyster Crassostrea gigas in central New Zealand. The model was based on DEB theory and developed prior to empirical information according to a common mechanistic rule in organisms' physiology. Subsequently, both laboratory and field experiments were specifically designed to collect datasets for parameter estimation and testing of the model. This approach to the modelling aimed to reduce uncertainties in parameter estimates and hence improve the applicability of the model. A lab-based starvation experiment was done over 170 days. Changes in body flesh weight were monitored and the respiration rate was measured. Dry flesh weight and the oxygen consumption rate decreased by 63.4% and 44.0% respectively over the experiment. Ash free dry flesh weight was proportional to the dry flesh weight, with coefficients of 83.5% and 58.7% respectively at the beginning and late stages of the experiment. Field-based growth experiments were done on a marine farm at two depths over 150 days to obtain biological and environmental information. The growth rate of oysters at 8 m depth was significantly greater than at 32 m depth. Chlorophyll-a concentration was highly variable, both spatially and temporally. Variation between depths provided ideal information for validation of the DEB model. Estimates of model parameters were augmented from studies in a local population. In comparison with previous studies on the same species from other ecosystems in the world, intraspecies variation was apparent in some parameters including maximum surface area-specific assimilation rate, which governs the ability of an individual for energy acquisition, and the fraction of energy utilisation rate used for maintenance plus growth, which determines energy fluxes to different components. The maximum storage density and volume-specific cost for growth also showed considerable intraspecies variability. Application of the model developed here showed that it is capable of simulating energetics and growth of the oyster in the growing area of central New Zealand.     

Normal physiological values for conscious pigs used in biomedical research

Although the domestic pig is rapidly becoming an animal of choice in certain areas of biomedical research requiring a large animal model, effective utilization of the species is often encumbered by a lack of reference values for common functional variables. To address this problem, normal data for over 100 physiologic or related variables were collected from conscious chronically instrumented animals that were maintained under near basal conditions. Included were measurements of body composition, fluid volumes, blood physical and biochemical characteristics, blood gas and acid-base status, plasma hormone levels, energy metabolism, renal function, hemodynamics and pulmonary function. Most porcine values were similar to those collected under comparable conditions from humans. Compared to adult man, however, pigs had higher values for extracellular space, plasma volume, arterial pH, plasma bicarbonate, cardiac output, arterial pressure, expired ventilation, heat production, and core temperature, and lower values for red cell volume, hemoglobin level, plasma osmotic and oncotic pressure, arterial O2 content, renal blood flow and glomerular filtration rate. Many of these deviations were due to immaturity. Nevertheless, we have found pigs to be an excellent large animal model for a variety of functional studies.     

Simulation of the decomposition and nitrogen mineralization of aboveground plant material in two unfertilized grassland ecosystems

A simple model of the decomposition and nitrogen mineralization of plant material from two unfertilized grassland ecosystems has been developed, with only the proportion of leaves and stems in the original material, the initial nitrogen contents of these plant parts and temperature as input data. The model simulates carbon losses from stems and leaves, using a double exponential decay function, with the temperature sum as independent variable. Mineralization of nitrogen is not calculated via microbial growth rates, but simulated on the basis of the carbon utilization efficiency of the microorganisms and the critical C/N ratio, i.e. the C/N ratio of the litter at which the microbial demand for nitrogen is met exactly. The parameter values for leaching fractions of carbon and nitrogen, relative decay rates, microbial carbon utilization efficiencies and critical C/N ratios were derived from a litter bag experiment with 12 litter types (species) including both green and dead materials, carried out in two unfertilized grassland ecosystems differing in production level. The model was evaluated using a cross-validation method, in which one species was omitted from the parametrization procedure, and its decomposition and mineralization were predicted by the resulting model. In general there was good agreement between the observed and predicted amounts of carbon and nitrogen remaining for all green litter types/species, but carbon and nitrogen dynamics in the dead material of Festuca rubra were poorly predicted. This disparity has been attributed to the proportion of leaves in the material of Festuca rubra (95%) being far beyond the range of leaf proportions in the three litter types the calibration set consisted of (8–35%). When the data of all litter types were used to determine the model parameters, good agreement was obtained between measured and simulated values for the changes in nitrogen and carbon in all litter types of both the green and dead material series. Optimization yielded parameter values for microbial carbon utilization efficiencies of 0.30 for microorganisms associated with green litter and 0.35 for those associated with dead litter. The critical C/N ratios for green and dead material were found to be 29 and 36, respectively.     

An improved technique for estimating pectoral muscle protein condition from body measurements of live gulls

Body measurements, which could be taken from live birds, were used to estimate total pectoral muscle protein in Lesser Black-backed Gulls Larus fuscus. The maximum cross-sectional area of the flight muscles was measured from the profile of the muscle surface over the keel, and this was used in conjunction with the length of the flight muscle to estimate muscle volume. The estimate of muscle volume was then used with fresh body weight to estimate total flight muscle protein. A highly significant correlation was found between the estimated values and actual pectoral muscle protein mass determined by carcass analysis. The model developed from the source group was then validated using a second independent sample, in which flight muscle protein was estimated from the model. Carcass analysis again demonstrated a good correlation between estimated and actual total protein. Different methods of controlling for body-size to calculate protein condition from measures of total protein were considered. The technique described here provides a simple and reliable method of estimating pectoral muscle protein condition in live gulls which could be applied to studies of body condition in other species.     

Cryopreservation and biophysical properties of articular cartilage chondrocytes

In order to successfully cryopreserve articular cartilage chondrocytes, it is important to characterize their osmotic response during the cryopreservation process, as the ice forms and the solutes concentrate. In this study, experimental work was undertaken to determine the osmotic parameters of articular cartilage chondrocytes. The osmotically inactive volume of articular cartilage chondrocytes was determined to be 44% of the isotonic volume. The membrane hydraulic conductivity parameters for water were determined by fitting a theoretical water transport model to the experimentally obtained volumetric shrinkage data; the membrane hydraulic conductivity parameter L(Pg) was found to be 0.0633 microm/min/atm, and the activation energy E, 8.23 kcal/mol. The simulated cooling process, using the osmotic parameters obtained in this study, suggests a cooling rate of 80 degrees C/min for the cryopreservation of the articular cartilage chondrocytes of hogs. The data obtained in this study could serve as a starting point for those interested in cryopreservation of chondrocytes from articular cartilage in other species in which there is clinical interest and there are no parameters for prediction of responses.     

Modeling of branching structures of plants

Previous studies of branching structures generally focused on arteries. Four cost models minimizing total surface area, total volume, total drag and total power losses at a junction point have been proposed to study branching structures. In this paper, we highlight the branching structures of plants and examine which model fits data of branching structures of plants the best. Though the effect of light (e.g. phototropism) and other possible factors are not included in these cost models, a simple cost model with physiological significance, needs to be verified before further research on modeling of branching structures is conducted. Therefore, data are analysed in this paper to determine the best cost model. Branching structures of plants are studied by measuring branching angles and diameters of 234 junctions from four species of plants. The sample includes small junctions, large junctions, two- and three-dimensional junctions, junctions with three branches joining at a point and those with four branches joining at a point. First, junction exponents (x) were determined. Second, log-log plots indicate that model of volume minimization fits data better than other models. Third, one-sided t -tests were used to compare the fitness of four models. It is found that model of volume minimization fits data better than other cost models.     

Electronic coupling and charge transfer of DNA: energy control

The influence of the energetic gap on the effective distance-decay rate of electronic coupling (beta(eff)) in DNA is investigated in the context of the superexchange mechanism. The DNA double helix is described by a tight-binding electronic Hamiltonian model, in which all orbitals have the same energy and interact with one another through an exponentially decaying function of distance. Our numerical results concerning the beta(eff) values obtained for two different DNA molecules are analyzed within the theoretical framework of the "continuous-medium approximation," previously developed by Lopez-Castillo et al. (J.-M. Lopez-Castillo, A. Filali-Mouhim, I.L. Plante, and J.-P. Jay-Gerin. J. Phys. Chem. 99 : 6864-6875, 1995). We find that the intervening DNA bridge between the donor and acceptor sites is defined by a unique dimensionless control parameter gamma/E, where E is the energy of the orbitals of this medium with respect to those of the redox site orbitals (energetic gap) and gamma is the electronic band width of the bridge considered as a continuous medium. In the narrow-band regime, our "through-space" coupling model predicts beta(eff) values that are in good order of magnitude agreement with those calculated by other theoretical approaches as well as with those obtained from experiment. Moreover, under equivalent energetic conditions, the DNA-mediated transfers of holes and electrons differ considerably. This difference depends upon the sign of the parameter gamma/E.     

The effect of porosity and mineral content on the Young's modulus of elasticity of compact bone

The Young's modulus of elasticity, the calcium content and the volume fraction (1-porosity) of 23 tension specimens and 80 bending specimens, taken from compact bone of 18 species of mammal, bird and reptile, were determined. There was a strong positive relationship between Young's modulus and both calcium content and volume fraction. A power law model fits the data better than a linear model. Young's modulus has a roughly cubic relationship with both calcium content and volume fraction. Over 80% of the total variation in Young's modulus in this data set is explained by these two variables.     

The breakdown of lipid reserves in the endosperm of germinating castor beans.

1. Lipid extracts were obtained from castor-bean endosperm tissue at various times during germination and, after purification, the total lipid content was determined. Quantitative measurements of the triglyceride and phospholipid content together with the fatty acid composition were made. 2. The total lipid content of the endosperm rapidly decreased during germination; after 10 days less than 20% of the original weight of lipid remained. In contrast, the phospholipid content (initially less than 0.5% of the total lipid) increased slightly during this time. The fatty acid composition and the relative proportions of the triglyceride species of the total lipid extract remained constant during 10 days of germination. 3. Gibberellic acid (0.3 mM) markedly stimulated the rate of lipid breakdown but did not alter either the fatty acid composition or the relative proportion of triglyceride species. 4. The embryo had little effect on lipid metabolism in the endosperm tissue; only after 6 days of germination were differences observed in the rate of fat utilization in the presence and absence of the embryo.     

Influence of Temperature on Glucose Utilization by Pseudomonas fluorescens

The influence of temperature on the conversion of glucose into cell material and into energy for maintenance was determined for Pseudomonas fluorescens by a steady-state turbidity method and by a substrate utilization method. Conversion of glucose into cell material was measured as yield; conversion of glucose into energy for maintenance was measured as specific maintenance, the minimum dilution rate in continuous culture below which a steady state is not possible. The values obtained by the two methods were nearly identical; with both, the yield and specific maintenance decreased with decreasing temperature. The specific maintenance consumption rate (milligrams of glucose taken up per milligram of cell dry weight per hour at zero growth) was also calculated by the substrate utilization method and found to decrease with decreasing temperature. However, the amount of glucose consumed per generation for maintenance increased with decreasing temperature. This increased glucose consumption for maintenance may provide a partial explanation for the decrease in yield at low temperatures. Small amounts of glucose were also converted into pigment at all temperatures tested, with the greatest amount formed at 20 C.     

A Mechanistic Theory for the Relationship between Growth Rate and the Concentration of Nitrate-N or Organic-N in Young Plants derived from Nutrient Interruption Experiments

A simple assumption about nitrate assimilation (incorporatinga single parameter to represent the conversion of nitrate intoorganic-N) has been used to derive mechanistic equations todescribe the interrelationships between the concentrations ofnitrate-N and organic-N, and dry weight for both the whole plantand its shoot in nutrient interruption experiments. These equationshave been combined with a logistic growth model, which was derivedfrom initial assumptions about the way in which plants use storedN under these conditions (Burns, 1994), to quantify effectsof nitrate-N and organic-N concentrations on relative growthrate. The models were tested by fitting equations for the predictedrelationships to data for young cabbage and lettuce plants,from which estimates of the N assimilation parameter were obtained.The tests showed that predictions of relative growth rate weregenerally in good agreement with the data over the whole range,as were those for the corresponding relationships between dryweight and either nitrate-N or organic N- concentration, andfor the interrelationships between the two forms of N. The mostreliable estimates of the N assimilation parameter were obtainedfrom relationships where nitrate-N concentration was the explanatory(independent) variable, because the fits of the correspondingrelationships with organic-N were relatively insensitive tolarge changes in its values. The results showed no evidenceof any consistent variation in the size of this N assimilationparameter with the nitrate status of the plant. However, smallbetween-crop differences in its value suggest that shoot nitratemay have been assimilated slightly more efficiently in cabbagethan in lettuce. The new model predicts that dry matter production is restrictedas soon as the external N supply is withheld (irrespective ofthe plant nitrate status), producing a slow but consistent declinein relative growth rate which is maintained until nitrate isalmost depleted, whereupon it falls rapidly. This implies thatthe rate of chemical reduction of stored nitrate was not sufficientto maintain an adequate supply of organic-N for the productionof new dry matter (even when its concentration in the plantsis still high). The results show that nitrate concentrationsin excess of 0·1 mmol g^-1 are required in plants to avoidserious reductions in growth rate when N is in short supply.Copyright1994, 1999 Academic Press Cabbage, concentration, deficiency, hydroponics, lettuce, model, nitrogen, nitrate, nutrient interruption, organic-N, relative growth rate, shoot, whole plant     

The nine-parameter gene conversion model: simpler equations, validity tests, and multiple fits

Lamb and Zwolinski (1992, 1993) provided equations and a method for finding nine parameter values for gene conversion between two alleles at one locus, to study mechanisms for homologous meiotic recombination. Simpler, shorter, and easier-to-use equations have been given here, and the accuracy of the parameter values found has been analysed. Fincham's (1994) criticisms of this method have been tested in several ways and shown to be incorrect. The model's validity has been tested directly: sets of arbitrarily chosen parameter values were used to work out the numbers expected in each segregation class for a sample of 100,000 octads. People not knowing the chosen parameter values used those octad class numbers in computer programs based on the Lamb-Zwolinski method. The best-fitting sets of parameter values obtained corresponded exactly to those initially set. The occurrence of multiple fits has been demonstrated and discussed; when multiple fits occurred, the parameter values in different best fits were fairly similar in absolute values and very similar in relative values.