Further evidence for the presence of meiotic pairing control genes in Alopecurus L. (Gramineae)

Mathematical equations applied to data on the meiotic chromosome behaviour of diploid, triploid and tetraploid Alopecurus species, their hybrids and synthesised autopolyploids confirm that chromosome pairing among homologues does not occur at random. The genotypic control of preferential bivalent formation is demonstrated and its role in natural populations discussed.     

The effect of reciprocal translocations on segregation and multivalent formation in autotetraploids of rye,Secale cereale

Chromosomal segregation, and the frequency of large multivalents in Secale cereale were studied in autotetraploid duplex translocation heterozygotes. Models for estimating expected segregations and frequencies of multivalents were developed incorporating the probabilities of different chromosomal segments being bound by chiasmata. It appeared that the segregation of the two translocations tested fitted quite well the expected corrected segregation ratio of approximately 1: 11.5: 1, suggesting that induced preferential pairing was not strong enough to enhance preferential segregation resulting from random translocation segregation. Interspecific hybrids with S. montanum carrying the same translocations showed strong preferential pairing, i.e. significant deviation from the expected ratios.Three translocations tested (two not tested for segregation) showed a decrease in multivalent frequency mainly attributable to preferential pairing, especially in cases where the breakpoint was near one chromosome end. Possible reasons why preferential pairing is expressed here and not in the segregations are discussed.     

Preferential pairing estimates from multivalent frequencies in tetraploids.

Mathematical models are presented for estimating preferential pairing and chiasma parameters in amphidiploids and autotetraploids on the basis of diakinesis or metaphase I configuration frequencies and are compared with other approaches of estimating affinity. With a preferential pairing factor p, estimated from quadrivalent and trivalent frequencies, and estimated chiasmate association factors for the two arms in quadrivalents (a(qu) and b(qu) for arms A and B, respectively) and in bivalents (a(bi) and b(bi)) a perfect fit between observed and predicted configuration frequencies can often be obtained in amphidiploids of several plant species, including Solanaceae and Gramineae. Since several proven autotetraploids give very similar apparent preferential pairing estimates, the biological significance of such parameters as preferential pairing and affinity factors is considered limited. The same is true for pairing parameters estimated by optimizing fit of configuration frequencies expected on the basis of theoretical models to observed data.     

A mixed polyploid model for linkage analysis in outcrossing tetraploids using a pseudo-test backcross design.

Based on how chromosomes pair at meiosis, the nature of polyploids can be described by bivalent polyploids, multivalent polyploids, and mixed polyploids. In bivalent polyploids, only two chromosomes pair, during which two more similar chromosomes have a higher pairing probability (preferential pairing) than two less similar chromosomes, whereas in multivalent polyploids more than two chromosomes pair at a time, which results in double reduction. Preferential chromosome pairings and double reduction affect the frequencies of gamete formation and, therefore, linkage analysis of polymorphic markers in bivalent and multivalent polyploids, respectively. For mixed polyploids, in which both bivalent and multivalent formations occur simultaneously, linkage analysis is affected by both preferential pairings and double reduction. In this study, we develop a hierarchical maximum likelihood model for discerning gamete genotypes derived from different pairing mechanisms and different formation modes. The first-stage model in the hierarchy is formulated to characterize the relative frequencies of bivalent and multivalent pairing configurations in terms of the preferential pairing factor. The second-stage model is derived to rule out identical gamete genotypes into their different formation modes with relative probabilities determined by the recombination fraction. The first-stage pairing mechanism and second-stage formation mode are integrated to provide the simultaneous maximum likelihood estimates of the preferential pairing factor, the frequency of double reduction, and the recombination fraction, by implementing the EM algorithm. We performed extensive simulation studies to demonstrate the statistical properties of our hierarchical model for linkage analysis in tetraploids. The implications of our model for polyploid linkage mapping are discussed.     

Chromosome Differentiation and Pairing Behavior of Polyploids: An Assessment on Preferential Metaphase I Associations in Colchicine-Induced Autotetraploid Hybrids within the Genus Secale

Preferential chromosome association at metaphase I has been analyzed and compared in autotetraploid cells obtained by colchicine treatment of hybrid diploid rye plants with different degrees of chromosomal divergence between homologs. The tendency to identical over homologous, but not identical, pairing preferences detected when homologous partners are contributed by less related parental lines indicates that chromosome differentiation may play an important role on preferential pairing behavior of polyploids. However, associations between more similar (identical) partners are not always favored, thus suggesting that additional factors must be considered. Other hypotheses for explaining pairing preferences in competitive situations are discussed. No clear relationship has been found between multivalent frequencies at metaphase I and chromosome differentiation between homologs or preferential pairing behavior. Therefore evolutionary divergences among related genomes should be carefully stated when evaluated from metaphase I configuration frequencies.     

Estimation of preferential pairing in tetraploid x diploid hybridizations

Summary Crosses made between tetraploid and diploid, 2n pollen-producing species directly transfer from one-half to the entire diploid genome from the diploid to the tetraploid level, depending on the mechanism of 2n pollen formation and the amount of crossing-over that occurs. Tetraploid plants that result from tetraploid x diploid hybridizations can be further utilized in a breeding program. It is postulated that preferential pairing between homologous chromosomes derived from the original tetraploid or diploid parent occurs in the tetraploid x diploid hybrid. Depending on the genetic divergence of the species involved, preferential pairing of homologous chromosomes may range from zero to one. Theoretical estimates of the amount of preferential pairing and the standard errors of these estimates are derived for cases where the diploid parent produces 2n gametes by either a first division or a second division restitution mechanism.     

一种叶甲(Timarcha maritima)(鞘翅目:叶甲科)的种群变异性

本文研究了一种叶甲(Timarchamaritima)的种群变异性,在此物种的整个分布范围内,沿法国大西洋海岸取选10个种群,测定个体大小、生育力、寄生量、性比、交配模式几个变量,各变量在不同种群间呈现显著差异。我们的调查结果也表明:原生生物(簇虫,Gregarinamunieri)的寄生是影响T.maritima生态习性的主要因素;这种甲虫的交配模式与寄生量有关,这种交配模式3年前已在一个高寄生种群内发现;个体大小与交配的关联不显著,即便是在没有寄生的种群中也是这样;在不同种群间,寄生感染程度也是一个有力的指示量,可以预示雌性个体的生育力变化;相反,不管观察什么种群,外寄生种(蜱螨,Pseudamansiachrysomelinus)(Acari:Canestriniidae)的作用很小。这项研究表明:在研究种群生态学时,需要同时观察寄生物的影响。     

A general polyploid model for analyzing gene segregation in outcrossing tetraploid species

Polyploidy has played an important role in higher plant evolution and applied plant breeding. Polyploids are commonly categorized as allopolyploids resulting from the increase of chromosome number through hybridization and subsequent chromosome doubling or autopolyploids due to chromosome doubling of the same genome. Allopolyploids undergo bivalent pairing at meiosis because only homologous chromosomes pair. For autopolyploids, however, all homologous chromosomes can pair at the same time so that multivalents and, therefore, double reductions are formed. In this article, we use a maximum-likelihood method to develop a general polyploid model for estimating gene segregation patterns from molecular markers in a full-sib family derived from an arbitrary polyploid combining meiotic behaviors of both bivalent and multivalent pairings. Two meiotic parameters, one describing the preference of homologous chromosome pairing (expressed as the preferential pairing factor) typical of allopolyploids and the other specifying the degree of double reduction of autopolyploids, are estimated. The type of molecular markers used can be fully informative vs. partially informative or dominant vs. codominant. Simulation studies show that our polyploid model is well suited to estimate the preferential pairing factor and the frequency of double reduction at meiosis, which should help to characterize gene segregation in the progeny of autopolyploids. The implications of this model for linkage mapping, population genetic studies, and polyploid classification are discussed.     

The genetics of meiotic chromosome pairing in Lolium temulentum x Lolium perenne tetraploids

Summary The degree of preferential pairing of homologous chromosomes was estimated in a series of tetraploid hybrids of Lolium temulentum x Lolium perenne by means of cytological and genetic analyses. The correlations between the frequency of bivalents at first metaphase of meiosis in the hybrid tetraploids and the degree of preferential pairing calculated from the segregation pattern of isozyme alleles in a test cross was extremely high. The results showed clearly that suppression of heterogenetic pairing in these Lolium tetraploids is achieved by a genetic system involving the A chromosomes as well as the B chromosome system which has been known for some time. Certain similarities with the genetic system controlling pairing in polyploid wheats are discussed.     

Regional Bivalent-Univalent Pairing versus Trivalent Pairing of a Trisomic Chromosome in Saccharomyces Cerevisiae

In meiosis I, homologous chromosomes pair, recombine and segregate to opposite poles. These events and subsequent meiosis II ensure that each of the four meiotic products has one complete set of chromosomes. In this study, the meiotic pairing and segregation of a trisomic chromosome in a diploid (2n + 1) yeast strain was examined. We find that trivalent pairing and segregation is the favored arrangement. However, insertions near the centromere in one of the trisomic chromosomes leads to preferential pairing and segregation of the ``like' centromeres of the remaining two chromosomes, suggesting that bivalent-univalent pairing and segregation is favored for this region.     

Preferential base pairing modes of T·T mismatches

It has long been recognized that T·T mismatches can adopt two different modes of exchangeable wobble base pairs in which no preferential pairing mode has been observed. In this study, we have performed a systematic nuclear magnetic resonance (NMR) investigation to study the sequence context effect on the pairing modes of T·T mismatches. Our results reveal for the first time that preferential pairing mode does exist in T·T mismatches with specific type of flanking base pairs.     

Chromosome pairing in triploid intergeneric hybrids ofFestuca pratensis withLolium multiflorum, revealed by GISH

Genomic in situ hybridisation (GISH) was used to reveal chromosome pairing in two partly fertile, triploid (2n = 3x = 21) hybrids obtained by crossing the diploid (2n = 2x = 14) Festuca pratensis Huds. (designated FpFp), used as a female parent, with the autotetraploid (2n = 4x = 28) Lolium multiflorum Lam. (designated LmLmLmLm), used as a male parent. The pattern of chromosome pairing calculated on the basis of the mean values of chromosome configurations identified in all 100 PMCs analysed, was: 0.71I Lm + 2.24I Fp + 2.18II Lm/Lm + 0.54II Lm/Fp + 4.18III Lm/Lm/Fp. A relatively high number of Lm/Lm bivalents and Fp univalents, and a low number of Lm/Fp bivalents and Lm univalents indicated that the pairing was preferential between L. multiflorum chromosomes. Other observations regarding chromosome pairing within the Lm/Lm/Fp trivalents also confirmed this preferential pairing in the analysed triploids, as the Fp chromosome was not randomly located in the chain- and frying-pan-shaped trivalents. The similarities and differences in chromosome pairing at metaphase I and the level of preferential pairing between Lolium chromosomes in the different triploid Lolium-Festuca hybrids are discussed.     

The Double-Reduction Landscape in Tetraploid Potato as Revealed by a High-Density Linkage Map

The creation of genetic linkage maps in polyploid species has been a long-standing problem for which various approaches have been proposed. In the case of autopolyploids, a commonly used simplification is that random bivalents form during meiosis. This leads to relatively straightforward estimation of recombination frequencies using maximum likelihood, from which a genetic map can be derived. However, autopolyploids such as tetraploid potato (Solanum tuberosum L.) may exhibit additional features, such as double reduction, not normally encountered in diploid or allopolyploid species. In this study, we produced a high-density linkage map of tetraploid potato and used it to identify regions of double reduction in a biparental mapping population. The frequency of multivalents required to produce this degree of double reduction was determined through simulation. We also determined the effect that multivalents or preferential pairing between homologous chromosomes has on linkage mapping. Low levels of multivalents or preferential pairing do not adversely affect map construction when highly informative marker types and phases are used. We reveal the double-reduction landscape in tetraploid potato, clearly showing that this phenomenon increases with distance from the centromeres.     

The evolution of Spartina anglica C.E. Hubbard (Gramineae): origin and genetic variability

An extensive survey of isozyme phenotypes in British populations of the amphidiploid salt marsh grass Spartina anglica and its putative parents has confirmed that the species arose by chromosome doubling in S. × townsendii , a sterile hybrid between S. maritima and S. alterniflora. Isozyme phenotypes and seed protein profiles indicate that S. anglica is almost totally lacking in genetic variation. Isozyme evidence also indicates that the parental species are characterized by low levels of genetic variation. The lack of variation in S. anglica is proposed as being due to a narrow genetic base resulting from a single origin, or a multiple origin from uniform parents; the fact that many populations are derived from very small founder populations; and because preferential pairing between identical homologous chromosomes prevents recombination between the divergent component genomes of the species. The low levels of isozyme variation that occur appear to be due to chromosome loss.
The consequences for the future evolution of S. anglica , given its lack of genetic variation, are discussed.     

Genome relationships in the diploid oats

Genome relationships between the three diploid oats, Avena strigosa (S.), A. longiglumis (L.) and A. prostrata (P.) were studied by chromosome pairing in diploid hybrids and in synthetic triploids and tetraploids combining these genomes. Fairly regular pairing in the diploid hybrid and typical autopolyploid behavior in the triploids and in the amphidiploid suggest small differentiation in the chromosome architecture of A. longiglumis and A. prostrata. A. strigosa diverges from the other two oats by complex chromosome rearrangements. Conspicuous preferential pairing took place in triploids with SSL, SSP and SPP genomic constitution. The low bivalent frequency in the SLL triploid suggests that preferential pairing in triploids with two S genomes is not a consequence of chromosome rearrangement but is rather of genetic origin. The presence of the three genomes in a triploid or a tetraploid caused considerable meiotic irregularities suggesting a better pairing competition of the S genome.     

A bivalent polyploid model for linkage analysis in outcrossing tetraploids

Polyploids can be classified as either allopolyploids or autopolyploids based on their presumed origins. From a perspective of linkage analysis, however, the nature of polyploids can be better described as bivalent polyploids, in which two chromosomes pair at meiosis, multivalent polyploids, in which more than two chromosomes pair, and general polyploids, in which bivalent and multivalent formations occur simultaneously. In this paper, we develop a statistical method for linkage analysis of polymorphic markers in bivalent polyploids. This method takes into account a unique cytological pairing mechanism for the formation of diploid gametes in tetraploids-preferential bivalent pairings at meiosis during which two homologous chromosomes pair with a higher probability than two homoeologous chromosomes. The higher frequency of homologous over homoeologous pairing, defined as the preferential pairing factor, affects the segregation patterns and linkage analysis of different genes on the same chromosome. A maximum likelihood method implemented with the EM algorithm is proposed to simultaneously estimate linkage and parental linkage phases over a pair of markers from any possible marker cross type between two outbred bivalent tetraploid parents demonstrating preferential bivalent pairings. Simulation studies display that the method can be well used to estimate the recombination fraction between different marker types and the preferential pairing factor typical of bivalent tetraploids. The implications of this method for current genome projects in polyploid species are discussed.     

Genetic segregation in relation to chromosome pairing in tetraploid hybrids between Lolium perenne and L. multiflorum

Summary Segregation at one of the loci controlling tiller-base pigmentation was studied to determine the mode of inheritance in tetraploid hybrids between Lolium perenne and L. multiflorum. The results could be explained by tetrasomic inheritance and thus did not support previous reports of a degree of preferential chromosome pairing in this material. However, double reduction and aneuploidy may to some extent have masked any tendency to disomic segregation brought about by preferential pairing. Moreover, there was significant heterogeneity between families in the segregation ratios which may indicate genetically controlled differences in pairing behaviour. The results are related to previous cytological and genetic studies.     

Patterns of courtship between cowbird subspecies: evidence for positive assortment

The courtship and mating behaviour of captive individuals from allopatric populations of two cowbird subspecies (Molothrus ater ater and Molothrus ater obscurus) were observed in a large indoor-outdoor aviary, using a multiple-choice design in order to assess whether they would selectively pair with members of their own subspecies. Twenty-nine of the 42 consortships observed were between consubspecifics, and 10 of the 15 copulating pairs were homogamic. Individuals tended to pair with consubspecifics whether or not they had had prior breeding experience with consubspecifics or winter contact with heterosubspecifics. This demonstration of selective courtship between individuals of widely separated populations is one of the first quantified examples, to our knowledge, of the development of assortative pairing in allopatry for a passerine species. These data place in perspective previous findings on the female cowbird's preferential response to playback of her own subspecies' song, thereby suggesting that song may be an important cue for selective mating between passerine populations.     

Hallmarks of homology recognition by RecA-like recombinases are exhibited by the unrelated Escherichia coli RecT protein

Homologous recombination is a fundamental process for genome maintenance and evolution. Various proteins capable of performing homology recognition and pairing of DNA strands have been isolated from many organisms. The RecA family of proteins exhibits a number of biochemical properties that are considered hallmarks of homology recognition. Here, we investigated whether the unrelated Escherichia coli RecT protein, which mediates homologous pairing and strand exchange, also exhibits such properties. We found that, like RecA and known RecA homologs: (i) RecT promotes the co-aggregation of ssDNA with duplex DNA, which is known to facilitate homologous contacts; (ii) RecT binding to ssDNA mediates unstacking of the bases, a key step in homology recognition; (iii) RecT mediates the formation of a three-strand synaptic intermediate where pairing is facilitated by local helix destabilization, and the preferential switching of A:T base pairs mediates recognition of homology; and (iv) RecT-mediated pairing occurs from both 3'- and 5'-single-stranded ends. Taken together, our results show that RecT shares fundamental homology-recognition properties with the RecA homologs, and provide new insights on an underlying universal mechanism of homologous recognition.     

Mechanical constraint on size-assortative paring success in a temperate frog: An experimental approach

In anurans with axillary amplexus, males may be unable to handle females much different in body size from them due to physical limitation. Such mechanical constraint during the grasping processes is thought to be one of the proximate mechanisms leading to pairs to form size-assortively. Using a pairing experiment, the purpose of this study was to test this prediction for a temperate frog (Rana chensinensis) wherein some size-assortative matings occur in natural populations. We found a reduced probability of pairing success as the difference between sexes. When one female was much larger than one male that attempted to grasp her, she tended to dislodge aggressively him, suggesting a role of mechanical constraint in facilitating female choice against small-sized mates. By contrast, when the male was much larger than the female, he often failed to grasp her effectively or remain her in amplexus for longer, indicating the restriction of mechanical constraint to male pairing attempts and to female preference for large-sized mates.