Twenty years of understorey bird extinctions from Amazonian rain forest fragments: consistent trends and landscape-mediated dynamics

Aim We analysed presence/absence data for understorey bird species in rain forest fragments sampled from 1979 through 2001. Here we consider extinctions between 1992, when most fragments had been isolated for at least 8 years, and 2001. Our objectives were to determine whether high extinction rates documented soon after isolation continued through up to 20 years after isolation, and to examine fragment size and landscape effects on extinction. Location Biological Dynamics of Forest Fragments Project, near Manaus, Brazil. Methods Through 1992, birds were surveyed with standardized mist net sampling in ten 1‐ to 100‐ha fragments. We repeated the mist net protocol in 2000–01. We also added remote taping of the dawn chorus and tape playback surveys for species captured in 1991–92 but not in 2000–01. Results Between 1992 and 2001, 37 species went extinct in at least one fragment. As expected, extinction rate decreased with increasing fragment size. Over 30% of species went extinct in 1‐ha fragments, compared to about 5% in 100‐ha fragments. Extinction followed a predictable pattern: most species lost from 100‐ha fragments between 1992 and 2001 had already gone extinct in smaller fragments before 1992. Despite extinctions, fragments gained species between 1992 and 2001, apparently due to species moving through the developing second growth matrix. Fragments surrounded by old second growth had lower extinction rates than predicted based on fragment size alone. Main conclusions Sequential extinctions occurred for at least 20 years. Some additional species previously lost from smaller fragments may continue to go extinct in 100‐ha fragments. At the same time, species assemblages in 1‐ and 10‐ha fragments mostly reflect second‐growth dynamics by 20 years after isolation. High species loss predicted from the first few years after isolation has not occurred, almost certainly because of recolonization.     

Functional biotic homogenization of bird communities in disturbed landscapes

Aim  Worldwide, functional homogenization is now considered to be one of the most prominent forms of biotic impoverishment induced by current global changes. Yet this process has hardly been quantified on a large scale through simple indices, and the connection between landscape disturbance and functional homogenization has hardly been established. Here we test whether changes in land use and landscape fragmentation are associated with functional homogenization of bird communities at a national scale.
Location  France.
Methods  We estimated functional homogenization of a community as the average specialization of the species present in that community. We studied the spatial variation of this community specialization index (CSI) using 1028 replicates from the French Breeding Bird Survey along spatial gradients of landscape fragmentation and recent landscape disturbance, measured independently, and accounting for spatial autocorrelation.
Results  The CSI was very sensitive to both measures of environmental degradation: on average, 23% of the difference in the CSI values between two sample sites was attributed to the difference in fragmentation and the disturbance between sites. This negative correlation between CSI and sources of landscape degradation was consistent over various habitats and biogeographical zones.
Main conclusions  We demonstrate that the functional homogenization of bird communities is strongly positively correlated to landscape disturbance and fragmentation. We suggest that the CSI is particularly effective for measuring functional homogenization on both local and global scales for any sort of organism and with abundance or presence–absence data.     

The impact of Tropical Cyclone Larry on bird communities in fragments of the endangered rainforest Type 5b

Abstract Bird surveys were conducted to assess the impact of a severe cyclone on bird communities in three fragments of the endangered rainforest Type 5b on the Atherton Tablelands of far north Queensland. Bird communities were surveyed using timed area searches in three sites in each of the three fragments and were undertaken prior to and following Tropical Cyclone Larry. Cyclone Larry caused short‐term changes in the abundance of some species of birds in Type 5b rainforest fragments. Two weeks after the storm, in two of three fragments surveyed, abundance of the frugivorous wompoo fruit‐dove (Ptilinopus magnificus) and figbird (Sphecotheres viridis) had decreased while the omnivorous Macleay's honeyeater (Xanthotis macleayana) and Lewin's honeyeater (Meliphaga lewinii) decreased in abundance in all three locations. Most insectivorous species increased in some sites and decreased in others following Cyclone Larry. Rapid recovery of bird communities to approximately their pre‐cyclone state after only 7 months appeared to reflect the capacity of species to either modify their foraging behaviour, switch foods, or to move within or between fragments or to other food sources in the landscape.     

Gap-crossing movements predict species occupancy in Amazonian forest fragments

In fragmented landscapes, species persistence within isolated habitat patches is governed by a myriad of species life‐history, habitat patch and landscape characteristics. We investigated the inter‐specific variation in non‐forest gap‐crossing abilities of an entire tropical forest‐dependent avifauna. We then related this measure of dispersal ability to species life‐history characteristics and occupancy data from 31 variable‐sized forest patches sampled within the same fragmented forest landscape. A total of 5436 gap‐crossing movements of 231 forest‐dependent bird species were observed across ten linear forest gaps of varying widths, adjacent to large areas of undisturbed forest. Species persistence in isolated fragments was strongly linked to gap‐crossing ability. The most capable gap‐crossers were medium to large‐bodied species in the large insectivore, frugivore and granivore guilds, matching the most prevalent subset of species in small forest patches. However, some competent gap‐crossing species failed to occur in small patches, and minimum forest‐patch area requirements were more important in determining patch occupancy for these species. Narrow forest gaps (4–70 m) created by roads and power‐lines may become territory boundaries, thereby eliminating home‐range gap‐crossing movements for many forest species, but permit rarer dispersal events. Wider gaps (>70 m) may inhibit gap‐crossing behaviour for all but the most vagile species. Although patch size and quality may be the most important factors in structuring species assemblages in forest fragments, our results show that the degree of patch isolation and permeability of the surrounding matrix also explain which species can persist in forest isolates. Reducing the number and width of forest‐dividing gaps; maintaining and/or creating forest corridors and increasing matrix permeability through the creation and maintenance of ‘stepping‐stone’ structures will maximise the species retention in fragmented tropical forest landscapes.     

Habitat segregation among freshwater shrimp species in an Amazonian rainforest stream system

1. Resource partitioning is a stabilising mechanism known to maintain species diversity in a variety of environments. Assemblages of stream shrimp species are structured by habitat features and predation. Therefore, segregation along habitat dimensions could facilitate coexistence among species in shrimp assemblages even when segregation is a result of predation pressure by fish species. These ecological interactions take place on a background modulated by biogeographic features, such as connectivity among drainages. However, these generalisations are mainly based on studies undertaken in temperate regions.
2. We investigated whether abundances of rainforest shrimp species are related to habitat dimensions, and whether habitat–abundance relationships might be mediated through fish-assemblage structure and the effect of drainages on connectivity.
3. We detected effects of habitat variation on densities of shrimp species, but the magnitudes of the effects were larger for some species than others. Fish-assemblage composition also affected shrimp densities. Two of the three species of shrimp showed some degree of habitat specialisation, but only along current-velocity, depth, and pH gradients. Habitat segregation among species occurred along the current-velocity and pH gradients. Relationships between density and environmental gradients differed between catchments for only one species and only along the pH gradient.
4. Our findings provide evidence that rainforest-stream shrimp species respond differently to environmental gradients and this could facilitate coexistence among species. However, interactions with fish seem to have a stronger effect on species densities, and consequently species segregation, than direct effects of the environmental gradients, resulting in apparent competition for these resources.

     

Forest classification in an Amazonian rainforest landscape using pteridophytes as indicator species

Habitat classification systems are poorly developed for tropical rainforests, where extremely high plant species richness causes numerous methodological difficulties. We used an indicator species approach to classify primary rainforest vegetation for purposes of comparative wildlife habitat studies. We documented species composition of pteridophytes (ferns and fern allies) in 635 plots (2×100 m) along 8 transects within a continuous rainforest landscape in northeastern Peruvian Amazonia. Considerable floristic variation was found when the data were analyzed using multivariate methods. The obtained forest classification was interpreted with the help of indicator value analysis and known soil preferences of the pteridophyte species. The final classification included four forest types: 1) inundated forests, 2) terrace forests, 3) intermediate tierra firme forests and 4) Pebas Formation forests. This rapid and relatively simple vegetation classification technique offers a practical, quantitative method for large-scale vegetation inventory in complex rainforest landscapes.     

Forest edges have high conservation value for bird communities in mosaic landscapes

A major conservation challenge in mosaic landscapes is to understand how trait‐specific responses to habitat edges affect bird communities, including potential cascading effects on bird functions providing ecosystem services to forests, such as pest control. Here, we examined how bird species richness, abundance and community composition varied from interior forest habitats and their edges into adjacent open habitats, within a multi‐regional sampling scheme. We further analyzed variations in Conservation Value Index (CVI), Community Specialization Index (CSI) and functional traits across the forest‐edge‐open habitat gradient. Bird species richness, total abundance and CVI were significantly higher at forest edges while CSI peaked at interior open habitats, i.e., furthest from forest edge. In addition, there were important variations in trait‐ and species‐specific responses to forest edges among bird communities. Positive responses to forest edges were found for several forest bird species with unfavorable conservation status. These species were in general insectivores, understorey gleaners, cavity nesters and long‐distance migrants, all traits that displayed higher abundance at forest edges than in forest interiors or adjacent open habitats. Furthermore, consistently with predictions, negative edge effects were recorded in some forest specialist birds and in most open‐habitat birds, showing increasing densities from edges to interior habitats. We thus suggest that increasing landscape‐scale habitat complexity would be beneficial to declining species living in mosaic landscapes combining small woodlands and open habitats. Edge effects between forests and adjacent open habitats may also favor bird functional guilds providing valuable ecosystem services to forests in longstanding fragmented landscapes.     

Bird communities in rainforest fragments: guild responses to habitat variables in Tabasco,Mexico

The effects of habitat loss and fragmentation in tropical forests are difficult to separate, as they usually occur concurrently. In the state park La Sierra, in Tabasco, Mexico, the rainforest is being cleared for pasture, and fragments are being used by local inhabitants. This study examined the response of bird feeding guilds to habitat characteristics, including human disturbance, in five fragments of different sizes (1 ∼ 4,500 ha, 2 ∼ 150 ha, and 2 ∼ 80 ha). Using point count observations, 125 species were recorded and were grouped into 11 feeding guilds. As expected, the largest fragment had higher species richness and abundances than the smaller fragments. However, five habitat features differed significantly among fragment sizes, including tree density, the number of tree stumps and the number of trails. Thus the larger fragment was also less disturbed. Fragment size alone was significant only for scavenger species richness, and for the abundance of bark gleaning insectivores and insectivore/nectarivores. Raptors were more diverse and abundant in the large fragment and less disturbed sites. Arboreal frugivores and bark or foliage gleaning insectivores, depended on higher trees and less disturbed sites. A better understanding of the mechanisms that affect persistence is essential for the planning of conservation actions.     

Spatial and temporal changes in bird assemblages in forest fragments in an eastern Amazonian savannah

We investigated the effects of forest fragmentation on bird assemblages in an Amazonian savannah landscape with forest fragments that have been isolated for more than 100 years. The study was conducted in areas surrounding the village of Alter do Chão (2°31′S, 55°00′W), Santarém, Brazil. Bird surveys and measurements of tree density were undertaken in 25 areas, with 19 plots in forest fragments of different sizes and six in an area of continuous forest. Data on forest‐fragment size, perimeter, and isolation were obtained from a georeferenced satellite image. Variation in number of bird species recorded per plot was not related to vegetation structure (tree density). The number of bird species recorded per plot increased significantly only with fragment area, but was not influenced by fragment shape or degree of isolation, even when considering species from the savannah matrix in the analysis. Fragments had fewer rare species. Multivariate ordination analyses (multiple dimensional scaling, [MDS]) indicated that bird species composition changed along a gradient from small to large forest fragments and continuous‐forest areas. In the Amazonian savannah landscapes of Alter do Chão, the organization and composition of bird assemblages in forest fragments are affected by local long‐term forest‐fragmentation processes. Differences in the number of bird species recorded per plot and assemblage composition between forest fragments and continuous forest were not influenced by forest structure, suggesting that the observed patterns in species composition result from the effects of fragmentation per se rather than from preexisting differences in vegetation structure between sites. Nevertheless, despite their long history of isolation, the forest fragments still preserve a large proportion (on average 80%) of the avifauna found in continuous‐forest areas. The fragments at Alter do Chão are surrounded by natural (rather than planted) grassland, with many trees in the savannah matrix and the landscape has vast areas covered by forest, which may have helped to ameliorate the influences of forest fragmentation.     

Effects of climate change on species turnover and body mass frequency distributions of South African bird communities

Climate change will lead to substantial shifts in species distributions. Most of the predictions of shifting distributions rely on modelling future distributions with ecological niche models. We used these models to investigate (i) the expected species turnover, loss and gain within bird communities of four South African biomes and (ii) the expected changes in the body mass frequency distributions of these communities. We used distributional data of the Southern African Bird Atlas Project, current climate data and two scenarios of future climate change for 2050 to build ensemble models of bird distributions. Our results indicate that future species loss, gain and turnover within the four biomes will be considerable. Climate change will also have statistically significant effects on body mass frequency distributions, and these effects differ substantially depending on the severity of future climate change. We discuss the possible ecological effects of these predicted changes on ecosystem interactions and functions.     

Bird species turnover and stochastic extinction in woodland fragments

Year-to-year turnover in bird species composition was recorded across, the whole size range (0 02-30 ha) of 146 woods studied The mean number of resident breeding species both lost and gained per wood between consecutive breeding seasons was 2 (range 0-8) No relationship was found between this absolute turnover rate and woodland area, or any other of 24 predictor variables (describing woodland structure, isolation, connectedness and surrounding land use) Extriction and colonisation rates (in terms of numbers of species lost and gained) were also unrelated to woodland area In all sizes of woods, the species most likely to show local extinctions and colonisations were those with small populations within those woods, but the identity of the species concerned changed as woodland area increased In the smallest woods, the majority of turnover involved common species, such as wren and dunnock, which occurred in only small numbers in these small woods As woodland area increased, these species attained sufficient numbers to usually avoid stochastic extinction The majority of turnover was then due to more specialist (and less numerous) woodland species, such as great-spotted woodpecker and marsh tit, which were usually lacking in small woods In Britain, much existing broadleaved woodland falls within the size range studied Thus the numbers of many bird species are liable to be small enough for yearly turnover in woodland bird communities to be appreciable, and for the long-term persistence of individual species in particular woods to depend on dispersal     

Modeling bird species distribution change in fire prone Mediterranean landscapes: incorporating species dispersal and landscape dynamics

Species distribution models (SDMs) have traditionally been founded on the assumption that species distributions are in equilibrium with environmental conditions and that these species–environment relationships can be used to estimate species responses to environmental changes. Insight into the validity of this assumption can be obtained from comparing the performance of correlative species distribution models with more complex hybrid approaches, i.e. correlative and process‐based models that explicitly include ecological processes, thereby accounting for mismatches between habitat suitability and species occupancy patterns. Here we compared the ability of correlative SDMs and hybrid models, which can accommodate non‐equilibrium situations arising from dispersal constraints, to reproduce the distribution dynamics of the ortolan bunting Emberiza hortulana in highly dynamic, early successional, fire driven Mediterranean landscapes. Whereas, habitat availability was derived from a correlative statistical SDM, occupancy was modeled using a hybrid approach combining a grid‐based, spatially‐explicit population model that explicitly included bird dispersal with the correlative model. We compared species occupancy patterns under the equilibrium assumption and different scenarios of species dispersal capabilities. To evaluate the predictive capability of the different models, we used independent species data collected in areas affected to different degree by fires. In accordance with the view that disturbance leads to a disparity between the suitable habitat and the occupancy patterns of the ortolan bunting, our results indicated that hybrid modeling approaches were superior to correlative models in predicting species spatial dynamics. Furthermore, hybrid models that incorporated short dispersal distances were more likely to reproduce the observed changes in ortolan bunting distribution patterns, suggesting that dispersal plays a key role in limiting the colonization of recently burnt areas. We conclude that SDMs used in a dynamic context can be significantly improved by using combined hybrid modeling approaches that explicitly account for interactions between key ecological constraints such as dispersal and habitat suitability that drive species response to environmental changes.     

Photosynthetic responses to light in seedlings of selected Amazonian and Australian rainforest tree species

Summary Seedlings of the Caesalpinoids Hymenaea courbaril, H. parvifolia and Copaifera venezuelana, emergent trees of Amazonian rainforest canopies, and of the Araucarian conifers Agathis microstachya and A. robusta, important elements in tropical Australian rainforests, were grown at 6% (shade) and 100% full sunlight (sun) in glasshouses. All species produced more leaves in full sunlight than in shade and leaves of sun plants contained more nitrogen and less chlorophyll per unit leaf area, and had a higher specific leaf weight than leaves of shade plants. The photosynthetic response curves as a function of photon flux density for leaves of shade-grown seedlings showed lower compensation points, higher quantum yields and lower respiration rates per unit leaf area than those of sun-grown seedlings. However, except for A. robusta, photosynthetic acclimation between sun and shade was not observed; the light saturated rates of assimilation were not significantly different. Intercellular CO₂ partial pressure was similar in leaves of sun and shade-grown plants, and assimilation was limited more by intrinsic mesophyll factors than by stomata. Comparison of assimilation as a function of intercellular CO₂ partial pressure in sun- and shade-grown Agathis spp. showed a higher initial slope in leaves of sun plants, which was correlated with higher leaf nitrogen content. Assimilation was reduced at high transpiration rates and substantial photoinhibition was observed when seedlings were transferred from shade to sun. However, after transfer, newly formed leaves in A. robusta showed the same light responses as leaves of sun-grown seedlings. These observations on the limited potential for acclimation to high light in leaves of seedlings of rainforest trees are discussed in relation to regeneration following formation of gaps in the canopy.     

Evolutionary consequences of human disturbance in a rainforest bird species from Central Africa

Relatively little attention has been directed towards understanding the impacts of human disturbance on evolutionary processes that produce and maintain biodiversity. Here, we examine the influence of anthropogenic habitat changes on traits typically associated with natural and sexual selection in the little greenbul (Andropadus virens), an African rainforest bird species. Using satellite remote-sensing and field survey data, we classified habitats into nonhuman-altered mature and human-altered secondary forest. Mature rainforest consisted of pristine rainforest, with little or no human influence, and secondary forest was characterized by plantations of coffee and cacao and high human impacts. Andropadus virens abundance was higher in secondary forest, and populations inhabiting mature rainforest were significantly larger in wing and tarsus length and bill size; characters often correlated with fitness. To assess the extent to which characters important in sexual section and mate choice might be influenced by habitat change, we also examined differences in plumage colour and song. Plumage colour and the variance in plumage luminance were found to differ between forest types, and song duration was found to be significantly longer in mature forest. The possible adaptive significance of these differences in traits is discussed. Despite relatively high levels of gene flow across habitats, amplified fragment length polymorphism analysis revealed that a small proportion of high-F(ST) loci differentiated mature from secondary forest populations. These loci were significant outliers against neutral expectations in a simulation analysis, suggesting a role for divergent selection in differentiation across habitats. A distance-based redundancy analysis further showed that forest type as defined by remote-sensing variables was significantly associated with genetic dissimilarities between habitats, even when controlling for distance. The observed shifts in morphology, plumage and song were consistent with divergent selection on heritable variation, but a role for plasticity cannot be ruled out. Results suggest that anthropogenic habitat changes may have evolutionary consequences, with implications for conservation and restoration.     

Spatially explicit conservation issues for threatened bird species in Mediterranean farmland landscapes

Coupling habitat models based on GIS and on ground variables could help identify suitable areas (by means of landscape models obtained by GIS variables) to concentrate management actions for species’ conservation. In this study, the habitat requirements of Lesser Greys (LGS) and Woodchat Shrikes (WS), two threatened farmland bird species declining in Europe, were assessed in Apulia (south-eastern Italy) by means of binary logistic regression at two different levels: landscape (using GIS-measured variables); and, territory (using ground-measured variables) scales. The LGS occurrence at landscape scale was correlated to steppe-like areas and cereal crops. At the territory level, significant effects were detected for deciduous forests and the presence of isolated trees and shrubs. The WS occurrence at landscape scale was promoted by steppe-like areas and cereal crops, whereas, at the territory level significant effects were detected for steppe-like areas positively and suburban areas negatively. The landscape model was extrapolated to the entire region. Within highly suitable areas (occurrence probability higher than 0.66 according to the landscape model), we measured average habitat features and compared them with the optimal mosaic depicted by the territory level models. This allowed us to give spatially explicit and site-specific management recommendations for these two threatened species. LGS will mostly benefit from an increase in isolated shrubs and trees; whereas for WS, the most widespread recommendations are to increase steppe-like habitat and to prevent further urbanisation.Coupling “coarse” landscape models with the species ecology provided by fine-scaled models can integrate relevant information on species potential distribution and territory level requirements, making planning fine-tuned habitat management (within potentially suitable landscapes) in a spatially explicit way possible.     

Forest structure predicts species richness and functional diversity in Amazonian mixed-species bird flocks

Secondary forest has the potential to act as an important habitat for biodiversity and restoring ecological benefits. Functional diversity, which includes morphological and behavioral traits that mediate species interactions with the surrounding environment, relates to the resilience of ecosystems. To assess the relationship between habitat structural differences in primary and secondary forest and the resultant differences in functional diversity of avian species, we followed 11 mixed-species flocks at the Biological Dynamics of Forest Fragments Project, near Manaus, Brazil. We used remote sensing LiDAR to assess which three-dimensional forest structural features are most closely associated with variation in species richness and functional diversity in secondary and primary tropical forest flocks. The species richness of flocks in primary forest increased in areas with higher elevation and higher leaf area density in the understory and subcanopy but was not correlated with habitat structure in secondary forest. Functional diversity increased at lower elevations and with a denser subcanopy in both primary forest and secondary forest but only increased with greater understory leaf area density in primary forest. Together, these results indicate that a dense subcanopy and understory can be important for mixed-species flocks and that flock richness and functional diversity can be predicted by vegetation structure.     

Geographical patterns of species turnover in aquatic plant communities

1. A classic theory in biogeography predicts that high latitude communities are unstable. This may be because of decreased species richness or decreased environmental predictability and productivity towards the poles.
2. We studied latitudinal patterns in long-term community persistence of aquatic vascular plants in 112 Finnish lakes, situated within a 1000-km range from the northernmost to the southernmost lake.
3. Contrary to theoretical predictions, we found that the turnover rate of plant species in 45 years was inversely related to latitude. That is, plant communities in northern lakes were more persistent than communities in southern lakes. When we used multiple regression to find the best predictors of species turnover rate (TR), latitude was the only variable that was highly significantly related to species turnover rate. Area, species number, water transparency, pH and change in transparency did not notably explain the gradient observed.
4. The latitudinal trend was mainly because of lower species immigration rates at higher latitudes, whereas extinction rate did not so strongly decrease with increasing latitude. Immigrations and extinctions in the lakes were not in balance: the species numbers between the 1930s and 1980s increased more strongly in the southern than northern lakes.
5. We suggest that the inverse relationship between latitude and plant species TR in Finland is most probably caused by human influence on lakes, especially eutrophication and immigration of new species in southern latitudes. In addition, although species richness per lake did not decrease towards the north, the total species pool probably does, which means that in the north there are fewer species that can actually immigrate.