Systematics of the Platyrrhinus helleri species complex (Chiroptera: Phyllostomidae), with descriptions of two new species

Platyrrhinus is a diverse genus of small to large phyllostomid bats characterized by a comparatively narrow uropatagium thickly fringed with hair, a white dorsal stripe, comparatively large inner upper incisors that are convergent at the tips, and three upper and three lower molars. Eighteen species are currently recognized, the majority occurring in the Andes. Molecular, morphological, and morphometric analyses of specimens formerly identified as Platyrrhinus helleri support recognition of Platyrrhinus incarum as a separate species and reveal the presence of two species from western and northern South America that we describe herein as new ( Platyrrhinus angustirostris sp. nov. from eastern Colombia and Ecuador, north‐eastern Peru, and Venezuela and Platyrrhinus fusciventris sp. nov. from Guyana, Suriname, French Guiana, Trinidad and Tobago, northern Brazil, eastern Ecuador, and southern Venezuela). These two new species are sister taxa and, in turn, sister to Platyrrhinus incarum. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 159 , 785–812.     

Habitat suitability modelling to improve conservation status of two critically endangered endemic Afromontane forest bird species in Taita Hills,Kenya

Tropical montane forests are known to support many endemic species with restricted geographic ranges. Many of these species are however, faced with numerous threats, most notably from habitat loss and degradation, invasive alien species, and climate change. Examples include Taita Apalis and Taita Thrush. Taita Apalis (Apalis fuscigularis) and Taita Thrush (Turdus helleri) are species of birds listed as Critically Endangered by the Government of Kenya and the International Union for Conservation of Nature (IUCN). They are endemic to Taita Hills’ cloud forests in southeastern Kenya and protected under Wildlife Conservation and Management Act. As they face high risk of extinction, exploring their habitat suitability is imperative for their protection. To determine the current spatial distribution and the key ecogeographical explanatory factors and conditions affecting species distribution and indirect effects on species survival and reproduction, we employed Maximum Entropy (MaxEnt) modelling. This study was conducted in Ngangao and Vuria forests in June and July 2019 and 2020. Ngangao forest is gazetted as forest reserve and managed by the Kenya Forest Service whereas Vuria is non-gazetted and thus remains without official protection status. Ecogeographical explanatory variables; climatic, remote sensing-, LIDAR-, topography- and landscape-based variables were used in modelling and separate models were produced. 23 occurrence records of Taita Apalis and 30 of Taita Thrush from Ngangao and 21 of Taita Apalis from Vuria forests were used in the modelling. According to the models, less than 7% of the total area of Ngangao and Vuria forests was predicted as suitable habitat for Taita Apalis and Taita Thrush. This shows that these two species are more vulnerable to extinction from demographic stochasticity. Consequently, managing their habitats is critical for their long-term persistence. LIDAR-based canopy height range and elevation greatly influenced Taita Apalis distribution in Ngangao forest, with areas of high elevation (1620–1750 m a.s.l.) and having open middle-storey preferred. Elevation, slope and topographic wetness index (twi) were the major determinants of Taita Thrush distribution in Ngangao, where gentle sloping areas with moderately dry surfaces within high elevation (1620–1730 m a.s.l.) were favoured. Mean annual temperature, Euclidean distance to the forest edge, slope and land cover type greatly influenced the distribution of Taita Apalis in Vuria, with gentle sloping areas within forest interior made up of indigenous vegetation preferred. This study proposes reforesting open and degraded sites next to areas predicted as highly suitable for the two species; establishment of agroforestry belts based on indigenous trees on the boundaries of the two forests to reduce grazing and firewood collection pressure and enhance resilience to the edge effects; and enhancing forest protection through Participatory Forest Management.     

A phylogeny of softshell turtles (Testudines: Trionychidae) with reference to the taxonomic status of the critically endangered,giant softshell turtle,Rafetus swinhoei

Several important aspects of the evolution of the softshell turtle (family Trionychidae) have not been addressed thoroughly in previous studies, including the pattern and timing of diversification of major clades and species boundaries of the critically endangered Shanghai Softshell Turtle, Rafetus swinhoei. To address these issues, we analyzed data from two mitochondrial loci (cytochrome b and ND4) and one nuclear intron (R35) for all species of trionychid turtles, except Pelochelys signifera, and for all known populations of Rafetus swinhoei in Vietnam and one from China. Phylogenetic analyses using three methods (maximum parsimony, maximum likelihood, and Bayesian inference) produce a well resolved and strongly supported phylogeny. The results of our time-calibration and biogeographic optimization analyses show that trionychid dispersals out of Asia took place between 45 and 49 million years ago in the Eocene. Interestingly, the accelerated rates of diversification and dispersal within the family correspond surprisingly well to global warming periods between the mid Paleocene and the early Oligocene and from the end of the Oligocene to the mid Miocene. Our study also indicates that there is no significant genetic divergence among monophyletic populations of Rafetus swinhoei, and that previous taxonomic revision of this species is unwarranted.     

A taxonomic study of thePoa macrocalyx complex,with particular reference to the populations in eastern Hokkaido

An attempt was made to investigate some populations of thePoa macrocalyx complex in eastern Hokkaido in relation to the taxonomy of this complex. Individual specimens preserved in TI, KYO and TNS were also studied. Chromosome counts of 2n=42 were obtained in the majority of a total of 84 collections, and counts of 2n=63 (incl. ca. 63), ca. 70 and 84 were also made in a few collections. High percentages of viable pollen were observed. The morphological features which were designated by previous authors to be significant in separatingPoa sachalinensis fromP. macrocalyx and in discriminating between the varieties ofP. macrocalyx were critically examined with emphasis on the observations of infra-population variation. It was confirmed that (1) the populations of thePoa macrocalyx complex in eastern Hokkaido are greatly variable morphologically and are also in a dynamic state cytogenetically, (2) plants of this complex in eastern Hokkaido belong to one and the same species,P. macrocalyx, and the varietiesfallax, scabriflora andtatewakiana may be merely morphs, and (3) some plants which are somewhat different from the plants in eastern Hokkaido with respect to glume features are distributed in Sakhalin, and northern and central Hokkaido. Some problems which should be subjected to further studies are pointed out.     

Systematics of malaria vectors with particular reference to the Anopheles punctulatus group

The appearance of groups and complexes of closely related cryptic or sibling species in many of the anopheline taxa has impeded studies on malaria transmission and the evaluation of control strategies which have relied on morphological characters to identify the vector species involved. The advantages of morphological identification are low cost, speed and simplicity, which allow large numbers of specimens to be processed rapidly in the field. The need for accurate identification is crucial, as time and money may be wasted in studying and controlling species of no medical importance. Various techniques such as cross-mating, chromosome studies and allozyme analysis have been developed to resolve problems of identifying sibling species, though none, as yet, can match the speed and simplicity afforded by morphology markers. The latest of these identification methods comes from advances that have been made in DNA-based technology. Although costly and requiring fairly sophisticated laboratory support, methods such as DNA probe hybridisation and PCR are the quickest and most user-friendly to date. The use of DNA has other advantages in the study of intraspecific differences and in providing characters for phylogenetic studies. This review looks at the development of DNA-based techniques for taxonomic and systematic studies of anopheline mosquitoes. The Anopheles punctulatus group of the southwest Pacific is featured as an example of how this technology has been applied and how it has progressed.     

Systematics of species referred to the genus Angiostrongylus

Based on morphological criteria of the male bursa, angiostrongylid nematodes often placed in the genus Angiostrongylus Kamensky (1905) were found to be heterogeneous, comprising species which are relegated to 5 distinct genera: Angiostrongylus Kamensky, 1905 (syn. Haemostrongylus Railliet and Henry, 1907); Parastrongylus Baylis, 1928 (syn. Pulmonema Chen, 1935, Rattostrongylus Schulz, 1951, Morerastrongylus Chabaud, 1972, Chabaudistrongylus Kontrimavichus and Delyamure, 1979); Angiocaulus Schulz, Orlov and Kutass, 1933; Gallegostrongylus Mas-Coma, 1977 (syn. Thaistrongylus Ohbayashi, Kamiya and Bhaibulaya, 1979 n. syn); and Stefanskostrongylus Drozdz, 1970. These genera all contain species located primarily in specific host groups: Angiostrongylus in carnivores; Parastrongylus in rodents (Muridae), Angiocaulus in mustelids; Rodentocaulus in rodents (Cricetinae), Gallegostrongylus in rodents (Muridae), and Stefanskostrongylus in insectivores. Species in each genus include: Angiostrongylus (A. vasorum, A. raillieti, A. chabaudi); Parastrongylus (P. tateronae, P. cantonensis, P. mackerrasae, P. sandarsae, P. sciuri, P. petrowi n. comb., P. dujardini, P. schmidti, P. costaricensis n. comb., P. malaysiensis n. comb., P. ryjikovi n. comb., P. siamensis n. comb.); Angiocaulus (A. gubernaculatus, A. ten n. comb., A. sp. Caballero, 1951); Rodentocaulus (R. ondatrae) and Gallegostrongylus (G. ibicensis, G. andersoni, G. harinasutai n. comb.). Angiostrongylus pulmonalis is likely similar to Stefanskostrongylus soricis and is transferred to this genus. Angiostrongylus minutus is removed to Stefanskostrongylus.     

Morphological and genetic analysis of fish of a Carassius complex (Cyprinidae) in Lake Kasumigaura with reference to the taxonomic status of two all-female triploid morphs

The classification of the Carassius complex (Cyprinidae) including all-female triploids, called ginbuna in Japanese, is so confused that three sympatric morphs of crucian carp in Lake Kasumigaura are categorized into two different subspecies within a species. We examined them in order to explain the coexistence of more than one subspecies and determine the founder of the triploid lineages in the crucian carp fauna in the lake. Principal component analysis proved that the three sympatric morphs had a morphometric basis distinguishable from each other. Ploidy was determined by flow cytometry which showed triploids in two morphs and diploids in the other morph. Stepwise discriminant analysis using only meristic characteristics could separate the diploids from the triploids. Phylogenetic analysis using mitochondrial DNA inferred two lineages in which one was composed of a triploid morph and the other was a diploid–triploid mixture. Disagreement between the taxonomic status and the phylogenetic status is explicable by assuming that the triploids in the Carassius complex had independent origins leading to the different subspecies. C. auratus langsdorfii appears to show genetic complexities that traditional taxonomic classification can not unravel.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 79 , 351–357.     

Molecular evidence for species status of the endangered Hainan peacock pheasant

The Hainan peacock pheasant is an endangered taxon found only on Hainan Island of China. Due to lack of detailed taxonomic studies, whether it is a subspecies of the grey peacock pheasant (Polyplectron bicalcaratum katsumatae) or a full species (Polyplectron katsumatae) remained unclear. We used molecular markers, including the complete mitochondrial cytochrome b gene and intron G of the nuclear ovomucoid gene, to reevaluate the taxonomy of the Hainan peacock pheasant. The results showed phylogeographic monophyly and large genetic distance between the Hainan peacock pheasant and the grey peacock pheasant. Sequence differences corroborated the species-level distinction between these two peacock pheasants, which were inferred to have diverged about 1.4+/-0.3 million years ago, near the time Hainan Island became separated from mainland China. Because the population density of the Hainan peacock pheasant is very low in its tropical forest on the island and the wild population is declining, it is now becoming severely endangered and should be ranked as the rarest species in the Order Galliformes in China. Our results increase the urgency of getting more morphological data to support the classification of the Hainan peacock pheasant as a distinct species and taking more conservation action immediately to protect this endangered island species.     

Systematics and distribution of theDiplophos taenia species complex (Gonostomatidae), with a description of a new species

For the systematic study of the gonostomatid fishes of theDiplophos taenia species complex, a total of 698 specimens was obtained from the three oceans. Four valid species were recognized:D. taenia Günther,D. proximus Parr,D. orientalis Matsubara, andD. australis sp. nov. The diagnostic characters are 90–100 total vertebrae (TV) (37–41 abdominal (AV) +52–60 caudal vertebrae (CV)) and 103–115 IC photophores (IC) for D.taenia, 85–90 TV (36–39 AV + 48–52 CV) and 98–104 IC forD. proximus, 83–86 TV (33–35 AV + 49–52 CV) and 92–100 IC for D.orientalis, and 84–91 TV (33–37 AV+ 50–54 CV) and 99–105 IC forD. australis. In addition to the above,D. proximus has larger orbital diameter (the proportion to head length 21–28%) than the other three species (15–23%) beyond 70mm in standard length. Due to wide distribution,D. taenia shows meristic variations: the numbers of TV, IC and anal fin rays (A) are smaller at lower latitudes and larger at higher ones in all oceans, and the number of A is smaller in the Atlantic (56–71) than in the other oceans (59–72) of the same latitude. Because of these variations, identification to species level is possible only area by area. The distribution of each of the four species is also distinct:D. taenia is a cosmopolitan between about 40° N and 30° S exclusive of the eastern tropical Pacific;D. proximus is endemic to the eastern tropical Pacific;D. orientalis is limited to the North Pacific transitional zone between about 30° and 40° N; andD. australis in a transitional zone of the Southern Ocean south of 20° S.     

Electrophoretic evaluation of the taxonomic status of two species of sea anemone

Puerto Rican populations of two species of sea anemones (Bunodosoma cavernata and B. granulifera) which had previously been considered one were assayed electrophoretically for enzymes encoded by 12 loci. The two species shared no common allozymes at 6 of the 12 loci. Genetic distance and identity values based on these allozymes were computed for the Puerto Rican populations and for B. cavernata from Florida and B. granulifera from Panama. The Puerto Rican populations of both species had much higher genetic identities for their geographically distant conspecifics than for each other. These results indicate that the two species are reproductively isolated and should be considered as separate valid species. Average heterozygosities are presented which are the first published for coelenterate species.     

Bioacoustic assessment of the taxonomic status of pool frog populations (Rana lessonae) with reference to a topotypical population

Six structural and temporal features of the mating calls of pool frogs recorded at eight localities in Italy, Germany, Yugoslavia and Albania were compared with those of the calls of topotypical Rana lessonae in northern Italy. All populations shared three out of six characters studied: call duration, intercall interval and call period. The pool frogs of three localities in peninsular Italy significantly differed in three characters from those of the other six localities, including the northern Italian one: pulses per pulse group, pulse groups per call, and pulse groups per second. This study demonstrates the existence of Rana bergeri , a pool frog species different from R. lessonae in peninsular Italy, but does not support the species status of the chemotaxonomically established R. shqiperica , which is considered as a synonym of R. lessonae .     

Systematics of the Gyrosigma balticum complex (Bacillariophyta), including three new species

Three new species in the genus Gyrosigma Hassall (G. caliG. Reid sp. nov., G. gibbyiG. Reid sp. nov. and G. murphyi G. Reid sp. nov) are described. A cladistic analysis on the basis of 10 morphological characters, was undertaken to investigate the interrelationships of these new species within Gyrosigma. As well as ‘standard’ cladistic analysis, which apportions equal weight to all characters, a posteriori differential weighting was also investigated. Pleurosigma subtilis Brébisson is transferred to Gyrosigma, as G. subtile (Brébisson) G. Reid comb. nov., because it is more closely related to other species of Gyrosigma than to Pleurosigma Smith. G. balticum var. californicum Grunow in Cleve and Möller is elevated to specific status [as G. californicum (Grunow in Cleve and Möller) G. Reid stat. nov.], because it does not form a monophyletic group with G. balticum (Ehrenberg) Rabenhorst.     

Systematics of Dendrobiinae (Orchidaceae), with special reference to Australian taxa

The systematics of subtribe Dendrobiinae, Dendrobium, and Australian dendrobiums in particular, are reviewed. Molecular approaches have delimited the subtribe, established Asian and Australasian clades and clarified relationships at some levels within them. At most lower taxonomic levels within Dendrobium s.l., resolution has been partial. Morphological and molecular phylogenetics indicate that Dendrocoryne, Rhizobium and some other sections are not monophyletic, with morphological analyses providing the greatest resolution into groups corresponding with biogeography. For most sections, sampling is too incomplete to determine relationships and monophyly. Distribution, pollination syndromes, breeding systems, fertility and specialized anatomical features contribute little to classification. Natural hybrids are more common than previously stated and may have played a role in the high level of homoplasy and evolution of Australian epiphytes. There is little support for splitting Dendrobium into many genera and species based on terminal clades. The evidence is interpreted as favouring recombination of Cadetia, Flickingeria and Diplocaulobium within the conserved broad genus Dendrobium. Nomenclatural stability is retained in continuing to use the long‐held subgeneric sectional classification, including many of the sections of Schlechter, and infraspecific ranks of subspecies and varieties. In Dendrocoryne, Thelychiton, Tropilis and Tetrabaculum are rejected, as is Dockrillia in Rhizobium. Proposals to elevate infraspecific taxa to species level for variable species complexes are not supported by current morphological or molecular data based on slowly evolving DNA regions. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 166 , 105–126.     

Morphology and genetics reveal an intriguing pattern of differentiation at a very small geographic scale in a bird species,the forest thrush Turdus lherminieri

Mobile organisms are expected to show population differentiation only over fairly large geographical distances. However, there is growing evidence of discrepancy between dispersal potential and realized gene flow. Here we report an intriguing pattern of differentiation at a very small spatial scale in the forest thrush (Turdus lherminieri), a bird species endemic to the Lesser Antilles. Analysis of 331 individuals from 17 sampling sites distributed over three islands revealed a clear morphological and genetic differentiation between these islands isolated by 40–50 km. More surprisingly, we found that the phenotypic divergence between the two geographic zones of the island of Guadeloupe was associated with a very strong genetic differentiation (F_st from 0.073–0.153), making this pattern a remarkable case in birds given the very small spatial scale considered. Molecular data (mitochondrial control region sequences and microsatellite genotypes) suggest that this strong differentiation could have occurred in situ, although alternative hypotheses cannot be fully discarded. This study suggests that the ongoing habitat fragmentation, especially in tropical forests, may have a deeper impact than previously thought on avian populations.     

Artificial production and natural breeding of the endangered frog species Odorrana ishikawae, with special reference to fauna conservation in the laboratory

Odorrana ishikawae is listed as a class IB endangered species in the IUCN Red List and is protected by law in both Okinawa and Kagoshima Prefectures, Japan. Here, in an effort to help effectively preserve the genetic diversity of this endangered species in the laboratory, we tested a farming technique involving the artificial breeding of frogs, and also promoted natural breeding in the laboratory. Field-caught male/female pairs of the Amami and Okinawa Island populations were artificially bred using an artificial insemination method in the 2004, 2006, and 2008 breeding seasons (March to April). Although fewer than 50% of the inseminated eggs achieved metamorphosis, approximately 500, 300, and 250 offspring from the three respective trials are currently being raised in the laboratory. During the 2009 and 2010 breeding seasons, second-generation offspring were produced by the natural mating activities of the first offspring derived from the two artificial matings in 2004. The findings and the methods presented here appear to be applicable to the temporary protection of genetic diversity of local populations in which the number of individuals has decreased or the environmental conditions have worsened to levels that frogs are unable to survive by themselves.     

The taxonomic status of Astragalus mokiacensis (Fabaceae), a species endemic to the southwestern United States

Astragalus mokiacensis has been a problematic species since it was first described in 1877. Every major revision delimited this taxon differently. A principal components analysis of morphological data from herbarium specimens was used to determine the affinities between type specimens and extant populations ofA. mokiacensis. The taxon recently recognized asA. lentiginosus var.trumbullensis is morphologically similar to the lectotype ofAstragalus mokiacensis. Astragalus lentiginosus var.trumbullensis is herein recognized as a lowelevation minor variant and considered a synonym ofA. mokiacensis. A taxonomic key and complete synonymy are included.