Effects of beech (Fagus sylvatica), ash (Fraxinus excelsior) and lime (Tilia spec.) on soil chemical properties in a mixed deciduous forest

Background and aims

We investigated the genetic diversity of arbuscular mycorrhizal fungi (AMF) in soils and the roots of Phalaris aquatica L., Trifolium subterraneum L., and Hordeum leporinum Link growing in limed and unlimed soil, the influence of lime application on AMF colonization and the relationship between AMF diversity and soil chemical properties.

Methods

The sampling was conducted on a long-term liming experimental site, established in 1992, in which lime was applied every 6 years to maintain soil pH (in CaCl₂) at 5.5 in the 0–10 cm soil depth. Polymerase chain reaction, cloning and sequencing techniques were used to investigate the diversity of AMF.

Results

Altogether, 438 AMF sequences from a total of 480 clones were obtained. Sequences of phylotypes Aca/Scu were detected exclusively in soil, while Glomus sp. (GlGr Ab) and an uncultured Glomus (UnGlGr A) were detected only in plant roots. Glomus mosseae (GlGr Aa) was the dominant AMF in the pastures examined; however, the proportion of G. mosseae was negatively correlated with soil pH, exchangeable Ca and available P. Generally, diversity of the AMF phylotypes was greater in the bulk unlimed soil and plants from this treatment when compared to the limed treatments.

Conclusions

Long-term lime application changed soil nutrient availability and increased AMF colonization, but decreased AMF phylotype diversity, implying that soil chemistry may determine the distribution of AMF in acid soils. Future studies are required to explore the functions of these AMF groups and select the most efficient AMF for sustainable farming in acid soils.     

Glomeromycotan mycorrhizal fungi from tropical Australia III. Measuring diversity in natural and disturbed habitats

Aims and Background

The aim was to investigate the diversity and distribution of Glomeromycotan fungi forming arbuscular mycorrhizal associations (AMF) in undisturbed and disturbed habitats in the vicinity of Kakadu National Park in tropical Australia. This is a tropical region with a 7–9 month dry season and a monsoonal wet season. Complimentary methods of fungus detection were used to investigate the diversity and relative dominance of AMF at a regional scale.

Methods

Soils were sampled from 32 sites, representing eucalypt savanna woodlands, wetlands, sandstone escarpment, rainforest, and disturbed mine waste rock dumps (overburden or spoil). Populations of AMF were identified and quantified using spores from soil. Morphology patterns of fungi colonising bait plant roots were examined and isolates were obtained by four complimentary pot-culturing methods.

Results

Different methods of detecting fungi produced different answers about which AMF were most important in the tested soils. In particular, spore surveys apparently underestimated the importance of Glomus species and overestimated the activity of Acaulospora species with numerous small spores, while calculated spore biovolumes overestimated the importance of Scutellospora and Gigaspora species with large spores, relative to inoculum levels of these fungus categories measured in bioassays. Spore surveys revealed 15 species of fungi and 8 additional fungi were recovered from the same soil samples using pot-culture isolation methods. Pot-cultures were especially important for detecting Glomus species that had high inoculum levels, but rarely produced spores in soils. Spores of AMF increased in abundance as vegetation developed in mine habitats reaching a peak that was higher than in undisturbed plant communities. Spore numbers (but not biovolumes) were well correlated with bioassay measurements of inoculum levels.

Conclusions

Most AMF species were widespread, but several were restricted to disturbed habitats or wetland soils. Undisturbed sites had a substantially higher diversity of AMF than partially vegetated mine waste rock dumps. It is recommended that AMF population surveys should not be based entirely on spore occurrence data, to avoid overlooking important fungi that sporulate infrequently. These fungi could be detected by bioassays or pot culture isolation from soil. Major variations in the detectability of AMF correspond to different life history strategies and can mask variations in their abundance.     

Plant neighbor effects mediated by rhizosphere factors along a simulated aridity gradient

Aims

We investigated how rhizosphere factors (total rhizosphere, roots, arbuscular mycorrhizal fungal hyphae [AMF], and soil solution) and water availability affect interactions between neighboring Medicago sativa plants.

Methods

A three-compartment mesocosm was used to test the effects of rhizosphere factors on plant–plant interactions. A relative interaction index (RII) was calculated to indicate whether effects of neighbor plant on target plant were positive or negative (facilitative or competitive). Isotope tracers were used to test whether AMF hyphae mediated competition for nitrogen (N) between target and neighbor plants.

Results

The effects of rhizosphere factors on the interactions between neighboring M. sativa plants depended on water availability. The effects of total rhizosphere shifted RII from negative to positive as water availability increased. Interaction with the roots and rhizosphere soil solution of neighbor plants shifted RII from negative to positive as water availability increased but the opposite was true for AMF hyphae. AMF hyphae helped neighbor plants compete for ¹⁵N when water was available but not when water was limiting.

Conclusions

The effect of total rhizosphere on plant–plant interaction of M. sativa shifted from competitive to facilitative as water availability increased. Competition was reduced by neighboring soil solution and roots but was increased by AMF hyphae.     

Nitrogen fixation in annual and perennial legume-grass mixtures across a fertility gradient

Background and aims

The selection of legume species and species mixtures influences agroecosystem nitrogen (N) and carbon cycling. We utilized a fertility gradient to investigate the effects of plant species interactions on biological N fixation of an annual and perennial legume in response to shifting soil resource availability.

Methods

Legume N fixation of annual field pea (Pisum sativum) and perennial red clover (Trifolium pratense) grown in monoculture and mixtures with oats (Avena sativa) or orchardgrass (Dactylis glomerata) was estimated using the ¹⁵N natural abundance method across 15 farm fields and we measured six soil N pools ranging from labile to more recalcitrant.

Results

Evidence of complementary and facilitative species interactions was stronger for the perennial red clover-orchardgrass mixture than for the annual field pea-oat mixture (N Land Equivalency Ratios were 1.6 and 1.2, respectively). We estimated that the transfer of fixed N from red clover to orchardgrass increased aboveground N fixation estimates by 15% from 33 to 38?kg?N ha^?1. Despite a more than 2-fold range in soil organic matter levels and more than 3-fold range in labile soil N pools across field sites, the N fertility gradient was not a strong predictor of N fixation. While grass N assimilation was positively correlated with soil N pools, we found only weak, inverse correlations between legume N fixation and soil N availability. In grass-legume mixtures, soil N availability indirectly influenced N fixation through plant competition.

Conclusions

These results suggest that increasing diversity of cropping systems, particularly through the incorporation of perennial mixtures into rotations, could improve overall agroecosystem N cycling efficiency.     

Seasonal differences in arbuscular mycorrhizal fungal communities in two woody species dominating semiarid caatinga forests

Tropical dry forests are strongly affected by seasonality, but its effects on belowground communities are poorly studied. Thus, the objective of this study was to reveal the effect of the season (dry versus wet) on the mycorrhizal status of roots and their potential colonization, and to determine the composition and abundance of spore-based communities of arbuscular mycorrhizal fungi (AMF) in rhizospheric soil of two dominant woody species in caatinga communities (tropical dry forest of the Brazilian Northeast). Soil and root samples were taken four times in each season (dry and wet). In the cases of the number of glomerospores and the number of infective propagules of AMF, there were significant differences between the hosts, with greater values observed in the rhizosphere of Commiphora leptophloeos than Mimosa tenuiflora. Mycorrhizal colonization and the number of infective propagules of AMF differed also between the seasons, being higher in the dry than the wet season. In total, fourteen AMF species were found in the rhizosphere of C. leptophloeos and twelve species were associated with M. tenuiflora. There was a predominance of the fungal genus Acaulospora, with seven species, followed by Gigaspora and Glomus. The species studied and the seasons differ in the composition and structure of the AMF community in the rhizosphere of the plants. The ecological significance of those differences needs to be examined further.     

The relationship between the diversity of arbuscular mycorrhizal fungi and grazing in a meadow steppe

Aims

To study the relationship between changes in soil properties and plant community characters produced by grazing in a meadow steppe grassland and the composition and diversity of spore-producing arbuscular mycorrhizal fungi (AMF).

Methods

A field survey was carried out in a meadow steppe area with a gradient of grazing pressures (a site with four grazing intensities and a reserve closed to grazing). The AMF community composition (characterized by spore abundance) and diversity, the vegetation characters and soil properties were measured, and root colonization by AMF was assessed.

Results

AMF diversity (richness and evenness) was higher under light to moderate grazing pressure and declined under intense grazing pressures. Results of multiple regressions indicated that soil electrical conductivity was highly associated with AMF diversity. The variation in AMF diversity was partially associated to the density of tillers of the dominant grass (Leymus chinensis), the above and below-ground biomass and the richness of the plant community.

Conclusions

We propose that the relationship between plants and AMF is altered by environmental stress (salinity) which is in turn influenced by animal grazing. Direct and indirect interactions between vegetation, soil properties, and AMF community need to be elucidated to improve our ability to manage these communities.     

Plant-soil feedbacks between invasive shrubs and native forest understory species lead to shifts in the abundance of mycorrhizal fungi

Aims

Non-native shrubs are important invaders of the Eastern Deciduous Forest, dramatically altering forest structure and functioning. Study of invasion mechanisms in this system has emphasized aboveground processes, and plant-soil feedbacks are relatively unexplored as a mechanism of shrub dominance. We tested whether plant-soil feedback in this habitat is affected by competition and whether arbuscular mycorrhizal fungi (AMF) are involved in plant-soil feedback.

Methods

We used a standard two-phase plant-soil feedback experiment run concurrently for each of three invasive shrub species, measuring feedback effects on AMF colonization, aboveground biomass, and the responses of native plant species in greenhouse mesocosms.

Results

Lonicera maackii and Ligustrum vulgare reduced AMF colonization of native roots, both with legacy effects (prior growth in soil) and direct effects (current growth in soil). Elaeagnus umbellata grown with natives left a legacy of increased AMF colonization of native communities.

Conclusions

Our results suggest that woody invasive species can alter the AMF associations of native plants even after the invasive is no longer present. Such consequences merit study with other native species and where environmental factors, such as light availability, might be expected to compound the effects of changes in AMF.     

Restoration of high altitude forests in an area affected by a wildfire: Polylepis australis Bitt. seedlings performance after soil inoculation

Key message

Outplanted Polylepis australis seedling growth, survival and mycorrhizal response were not influenced by inoculation with soil from different vegetation types. Seedling inoculation would not be essential for reforestation practices.

Abstract

Polylepis forests are one of the most endangered high mountain ecosystems of South America and reforestation with native Polylepis species has been recommended. To determine whether native soil inoculation could help in reforestation success, a field trial was set up to evaluate the response of outplanted P. australis seedlings to the inoculation with soils from three vegetation types (a grassland, a mature forest and a degraded forest) and a sterile soil, used as control. We evaluated seedlings performance: growth and survival for 18 months, root/shoot ratio, phosphorous content and arbuscular mycorrhizal fungal (AMF) colonization. To interpret performance patterns we evaluated the colonization potential of the three inoculum soils and the changes of the AMF community composition of the seedlings rhizosphere in relation to inoculation treatment and season. Our main results showed no significant differences in seedlings survival and growth between treatments. The colonization potential of grassland and degraded forest soils was ~25 times greater than mature forest soil and specific spore density of some morphospecies varied with season. However, AMF spore community of seedlings rhizosphere became homogenized after outplanting and was similar between treatments after 12 months. Therefore, we conclude that soil inoculation is not essential for outplanted P. australis survival and increase in height, and thus all the tested soils could be used as inocula, including grassland soils which in practice are the easiest to collect.     

Growth, carboxylate exudates and nutrient dynamics in three herbaceous perennial plant species under low, moderate and high phosphorus supply

Background and aims

Australian herbaceous native species have evolved in phosphorus (P) impoverished soils. Our objective was to explore shoot and root adaptations of two of these species with potential to be developed as pasture plants, at low, moderate and high P supply after 4 and 7?weeks of growth.

Methods

A glasshouse experiment examined the effect of 5, 20 and 80?mg?P?kg^?1 air-dry soil on growth, rhizosphere carboxylate content, and mineral nutrition of two Australian native perennials, Kennedia nigricans (Fabaceae) and Ptilotus polystachyus (Amaranthaceae), and the exotic Medicago sativa (Fabaceae).

Key results

Leaf P concentrations at P80 were 6, 14 and 52?mg?P?g^?1 leaf dry weight for M. sativa, K. nigricans and P. polystachyus, respectively. As soil P concentration increased, rhizosphere carboxylate content decreased for M. sativa, increased and then decreased for K. nigricans and was unchanged for P. polystachyus. For all species, the contribution of malic acid declined at the second harvest. For all species and P treatments, the amount of rhizosphere carboxylates per unit root length decreased as root length of a plant increased. Plant P content was determined more by P uptake rate per unit root length and time than by root length. Uptake of Mo for all species, and uptake of K, Mg and Mn for P. polystachyus, increased with soil P concentration. Uptake of Fe and S was higher when the content of carboxylates in the rhizosphere was higher.

Conclusion

Root physiological adaptations (i.e. rhizosphere carboxylate content and P-uptake rate) are more important than morphological adaptations (i.e. root length and diameter) to enhance the uptake of P and cations.     

Arbuscular mycorrhizal fungi affect seedling recruitment: a potential mechanism by which N deposition favors the dominance of grasses over forbs

Background and aims

Nitrogen (N) deposition usually alters plant community structure and reduces plant biodiversity in grasslands. Seedling recruitment is essential for maintaining species richness and determines plant community composition. Arbuscular mycorrhizal fungi (AMF) are widespread symbiotic fungi and could facilitate seedling establishment. Here we conducted an experiment to address whether the influence of AMF on seedling recruitment depends on N addition and plant species.

Methods

Leymus chinensis were cultivated for 5 months in the microcosms that were inoculated with or without AMF at five N addition rates. Seeds of three main species (two C₃ grasses and one non-N₂-fixing forb) of the Eurasian steppe were sown to the 5-month-old microcosms. Seedling establishment was estimated by shoot biomass, N and P contents 7 weeks after seedling germination.

Results

AMF promoted seedlings recruitment of two C₃ grasses at addition rates above 0.5 g N m^?2. In contrast, seedling recruitment of the non-N₂-fixing forb was increased by AMF at addition rates below 0.5 g N m^?2 but was decreased above 2.5 g N m^?2.

Conclusions

These results partly explain why N addition favored the dominance of grasses over forbs in perennial grassland communities. Our study indicates that AMF have the potential to influence plant community composition by mediating revegetation in the face of N deposition.     

Role of native and exotic mycorrhizal symbiosis to develop morphological,physiological and biochemical responses coping with water drought of date palm,Phoenix dactylifera

Key Message

Arbuscular mycorrhizal (AM) symbiosis can improve date palm growth and alleviate drought-related impacts than non-mycorrhizal plants due to the ability of AMF for modifying plant metabolism and physiology.

Abstract

Date palm (Phoenix dactylifera L.) is an important agricultural and commercial crop in the North of Africa and Middle Eastern countries. During the last decade, date palm plantations were subjected to degradation due to an extensive exploitation and to drastic environmental conditions such as drought. Currently, there is a growing interest in the valorization of water due to environmental problems and economic aspects. The use of arbuscular mycorrhizal fungi (AMF) can offer a possibility to overcome these problems. The objective of this study was to study the influence of different Glomus species—Glomus intraradices, G. mosseae and Complex Aoufous (native AMF)—on the development of date palm grown under two water regimes (optimal irrigation, 75 % of field capacity or water deficit, 25 % of field capacity). Our results revealed that the beneficial effect of mycorrhizal symbiosis on plant growth depended on the fungal species and the water regime applied to the palm date seedling. While the native Complex Aoufous was the most effective in increasing the shoot height and biomass under well-watered conditions, G. intraradices was the most beneficial fungus for improving growth of plants that undergo restricted water supply. This positive effect of G. intraradices under drought conditions was not related to an enhancement of the antioxidant enzymatic activities in leaves; the association of palm date with G. intradices caused an increase in the elasticity of cell walls in leaves and allowed maintaining high water content in leaves without lowering leaf water potential under stressful conditions. The adequate selection of the AMF species is crucial for improving growth of palm date seedlings, and it must be in accordance with the water regime that will be applied to plants.     

Host identity and functional traits determine the community composition of the arbuscular mycorrhizal fungi in facultative epiphytic plant species

The epiphytic vascular mycobiota is scarce and facultative in semi-arid Mediterranean ecosystems. However, unlike in soil conditions, little is known about the factors driving mycorrhizal communities in epiphytic environments. Here, we investigated the arbuscular mycorrhizal fungi (AMF) harboured by 31 plant species occurring on the trunks of Phoenix dactylifera. We wanted to ascertain if host identity and plant functional traits shape mycorrhizal communities. Specifically, we tested the plant life-cycle (perennial versus annual), the plant life-form (herbaceous versus woody), the plant origin (exotic versus native) and the plant species. The plant affiliation to species strongly influenced the AMF community composition. Plant life-form and plant life-cycle also shaped indicator taxa. The AMF structure differed between annual and perennial species and higher AMF richness was detected in perennial plants. The epiphytic plants associated with AMF irrespective of whether they were native or not, probably because here no functional differences derive from plant origin.     

Field inoculation with arbuscular-mycorrhizal fungi overcomes phosphorus and zinc deficiencies of linseed (Linum usitatissimum) in a vertisol subject to long-fallow disorder

Background and aims

Long-fallow disorder is expressed as exacerbated deficiencies of phosphorus (P) and/or zinc (Zn) in field crops growing after long periods of weed-free fallow. The hypothesis that arbuscular-mycorrhizal fungi (AMF) improve the P and Zn nutrition, and thereby biomass production and seed yield of linseed (Linum usitatissimum) was tested in a field experiment.

Methods

A factorial combination of treatments consisting of ± fumigation, ±AMF inoculation with Glomus spp., ±P and ±Zn fertilisers was used on a long-fallowed vertisol. The use of such methods allowed an absolute comparison of plants growing with and without AMF in the field for the first time in a soil disposed to long-fallow disorder.

Results

Plant biomass, height, P and Zn concentrations and contents, boll number and final seed yield were (a) least in fumigated soil with negligible AMF colonisation of the roots, (b) low initially in long-fallow soil but increased with time as AMF colonisation of the roots developed, and (c) greatest in soil inoculated with AMF cultures. The results showed for the first time in the field that inflows of both P and Zn into linseed roots were highly dependent on %AMF-colonisation (R²?=?0.95 for P and 0.85 for Zn, P?<?0.001) in a soil disposed to long-fallow disorder. Relative field mycorrhizal dependencies without and with P+Zn fertiliser were 85 % and 86 % for biomass and 68 % and 52 % for seed yield respectively.

Conclusions

This research showed in the field that AMF greatly improved the P and Zn nutrition, biomass production and seed yield of linseed growing in a soil disposed to long-fallow disorder. The level of mycorrhizal colonisation of plants suffering from long-fallow disorder can increase during the growing season resulting in improved plant growth and residual AMF inoculum in the soil, and thus it is important for growers to recognise the cause and not terminate a poor crop prematurely in order to sow another. Other positive management options to reduce long fallows and foster AMF include adoption of conservation tillage and opportunity cropping.     

Bacterial community in the rhizosphere of the cactus species Mammillaria carnea during dry and rainy seasons assessed by deep sequencing

Background and aims

The Tehuacán-Cuitcatlán reserve is an area of unique plant biodiversity mostly in the form of xerophytes, with exceptionally high numbers of rare and endemic species. This endemism results partly from the characteristics of the climate of this area, with two distinct seasons: rainy and dry seasons. Although rhizosphere communities must be critical in the function of this ecosystem, understanding the structure of these communities is currently limited. This is the first molecular study of the microbial diversity present in the rhizosphere of Mamillaria carnea.

Methods

Total DNA was obtained from soil and rhizosphere samples at three locations in the Tehuacán Cuicatlán Reserve, during dry and rainy seasons. Temperature gradient gel electrophoresisis (TGGE) fingerprinting, 16S rRNA gene libraries and pyrosequencing were used to investigate bacterial diversity in the rhizosphere of Mammillaria carnea and changes in the microbial community between seasons.

Results

Deep sequencing data reveal a higher level of biodiversity in the dry season. Statistical analyses based on these data indicates that the composition of the bacterial community differed between both seasons affecting to members of the phyla Acidobacteria, Cyanobacteria, Gemmatimonadetes, Plantomycetes, Actinobacteria and Firmicutes. In addition, the depth of sequencing performed (>24,000 reads) enables detection of changes in the relative abundance of lower bacterial taxa (novel bacterial phylotypes) indicative of the increase of specific bacterial populations due to the season.

Conclusions

This study states the basis of the bacterial diversity in the rhizosphere of cacti in semi-arid environments and it is a sequence-based demonstration of community shifts in different seasons.     

Interaction between root growth allocation and mycorrhizal fungi in soil with patchy P distribution

Aims and Background

Many plants preferentially grow roots into P-enriched soil patches, but little is known about how the presence of arbuscular mycorrhizal fungi (AMF) affects this response.

Methods

Lotus japonicus (L.) was grown in a low-P soil with (a) no additional P, (b) homogeneous P (28 mg pot^?1), (c) low heterogeneous P (9.3 mg pot^?1), and (d) high heterogeneous P (28 mg pot^?1). Each P treatment was combined with one of three mycorrhiza treatments: no mycorrhizae, Glomus intraradices, indigenous AMF. Real-time PCR was used to assess the abundance of G. intraradices and the indigeneous AMF G. mosseae and G. claroideum.

Results

Mycorrhization and P fertilization strongly increased plant growth. Homogeneous P supply enhanced growth in both mycorrhizal treatments, while heterogeneous P fertilization increased biomass production only in treatments with indigenous AMF inoculation. Preferential root allocation into P-enriched soil was significant only in absence of AMF. The abundance of AMF species was similar in P-enriched and unfertilized soil patches.

Conclusion

Mycorrhization may completely override preferential root growth responses of plants to P- patchiness in soil. The advantage of this effect for the plants is to give roots more freedom to forage for other resources in demand for growth and to adapt to variable soil conditions.     

Distribution and decline of endangered herbaceous heathland species in relation to the chemical composition of the soil

High atmospheric deposition of ammonium affects the physical and chemical status of the soil, increasing nitrogen availability, soil acidity and the mobilization of toxic metal ions. To investigate whether and how the decline of several herbaceous plant species in Dutch heathlands is associated with these processes, the chemical composition of the soil on which these species grow has been compared with the soil on which heathland species such asCalluna vulgaris (L.) Hull,Erica tetralix L. andMolinea caerulea (L.) Moench dominate. The discrimination between both soil types was primarily based on differences in pH (H₂O), pH (NaCl) and the aluminium/calcium ratio in the waterextracts. Within the group of endangered herbaceous heathland species these soil parameters also varied. This led to a division into 4 groups of species:

u

Dominating species growing on acid soils

Herbaceous species growing together with dominating species on acid soils

Herbaceous species growing together with dominating species on moderately acid soils

Herbaceous species growing together with dominating species on weakly acid soils.

This study indicated that, unlike the decline of heather species, the decline of herbaceous species is not likely to be due to increased competition from grass species as a result of eutrophication. Soil acidification and the changed mineral balance in the soil are most likely to be responsible for the decline of all three groups of herbaceous plant species. ei]R F Huettl     

Importance of native arbuscular mycorrhizal inoculation in the halophyte Asteriscus maritimus for successful establishment and growth under saline conditions

Background and aims

The biological restoration of saline habitats could be achieved by using halophyte plant species together with adapted arbuscular mycorrhizal fungi (AMF). An interesting plant to be used in restoration of saline environments, Asteriscus maritimus, is highly mycotrophic. The aim of this study was to assess the effectiveness of native and allochthonous AMF to enhance the establishment and growth of the halophyte A. maritimus under saline conditions.

Methods

We studied the symbiotic effectiveness of four AMF strains (three native fungal isolates from a saline soil and one allochthonous, from collection) in A. maritimus subjected to increasing salinity stress. We measured plant physiological parameters by which AMF may ameliorate the detrimental effects of salinity stress.

Results

A. maritimus plants showed a high mycorrhizal dependency, even in absence of salt stress. Plants inoculated with native AMF had higher shoot dry weight, efficiency of photosystem II, stomatal conductance and accumulation of glutathione than those inoculated with the collection AMF at the highest level of salinity. Moreover, at this salt level, only 30 % of A. maritimus plants inoculated with the collection AMF survived, while with the three native AMF, the rate of survival was 100 %.

Conclusions

Results points out the importance of native AMF inoculation in the establishment, survival and growth of A. maritimus plants. Inoculation with these native AMF enhanced A. maritimus salt tolerance by increasing efficiency of photosystem II, stomatal conductance and glutathione content and by reducing oxidative damage. Thus, the use of adequate native AMF inocula could be a critical issue for success in recovering saline degraded areas.     

Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia

Aims

To survey the occurrence of nodulated legumes in the arid and semi-arid areas of Western Rajasthan and to characterize their associated symbiotic bacteria.

Methods

Herbaceous annual species were excavated whole, while tree species were studied as seedlings in the field or as trap plants in pot experiments. Nodules were examined by microscopy to confirm their effectiveness and to determine their internal structure. Bacteria isolated from the nodules were authenticated on their original hosts and were identified on the basis of 16S rRNA sequencing. Phylogenetic trees were inferred using the neighbour-joining method.

Results

We studied 35 of more than 50 species of native legume reported from these areas. Legumes are drought escaping (annual species), drought tolerant perennials or trees possessing deep root systems and other adaptations to arid conditions. Nodulation was recorded in all members of the Papilionoideae and Mimosoideae, but only one species of Caesalpinioideae. Internal structure of nodules varied within these groups, especially with respect to the presence or absence of uninfected cells in the infected region. Full 16S rRNA gene sequencing revealed that the nodules harboured a range of nodulating bacteria belonging to the genera Sinorhizobium, Rhizobium and Bradyrhizobium, within which they formed separate sub clades.

Conclusions

This study extends the range of legumes known to grow and nodulate in semi-arid regions, and provides information about their endosymbionts.     

Effects of using different host plants and long-term fertilization systems on population sizes of infective arbuscular mycorrhizal fungi

The effect of cultivation of mycorrhizal and non-mycorrhizal plants and mineral fertilization on the arbuscular mycorrhizal fungal (AMF) community structure of maize (Zea mays L.) plants was studied. Soil samples were collected from two field experiments treated for 5 years with three fertilization systems (Control – no fertilization; Mineral – NPK fertilization; and Organic – Farmyard manure fertilization). Soil samples containing soil and root fragments of rapeseed (Brassica napus L., non-mycorrhizal plant) and wheat (Triticum aestivum L., mycorrhizal plant) collected from the field plots were used as native microbial inoculum sources to maize plants. Maize plants were sown in pots containing these inoculum sources for four months under glasshouse conditions. Colonization of wheat roots by AMF, AMF community structure, AMF diversity (Shannon’s index), AMF dominance (Simpson’s index) and growth of maize were investigated. Sixteen AMF species were identified from rhizosphere soil samples as different species of genera Acaulospora, Claroideoglomus, Dentiscutata, Funneliformis, Gigaspora, Quatunica, Racocetra, and Rhizoglomus. Maize plants grown in manure-fertilized soils had a distinct AMF community structure from plants either fertilized with mineral NPK-fertilizer or non-fertilized. The results also showed that inoculum from non-mycorrhizal plants combined with mineral fertilization decreased AMF diversity (Shannon’s index), AMF dominance (Simpson’s index) and growth of maize. Our findings suggest that non-mycorrhizal plants, such as B. napus, can negatively affect the presence and the effects of soil inoculation on maize growth. Also, our results highlight the importance of considering the long-term effect of rapeseed cultivation system on the reduction of population sizes of infective AMF, and its effect on succeeding annual crops.