Red-spotted Bluethroats Luscinia s. svecica migrate along the Indo-European flyway: a geolocator study

Capsule Red-spotted Bluethroats Luscinia s. svecica from two European breeding populations spent the boreal winter on the Indian sub-continent.

Aim Tracking the migration of Red-spotted Bluethroats from Europe to the hitherto unknown non-breeding areas and back.

Methods Light-level geolocators were deployed on male Bluethroats at breeding sites in the Czech Republic (n?=?10) and in Norway (n?=?30). Recorded light intensity data were used to estimate the locations of non-breeding sites and migration phenology during the annual cycle.

Results Bluethroats spent the boreal winter in India (n?=?3) and Pakistan (n?=?1), on average more than 6000?km from their breeding areas. Autumn migration started in August (n?=?1) or early September (n?=?2), and lasted for 26–74 days. Spring migration commenced on 8 and 9 April (n?=?2) and lasted for about a month. During both autumn and spring migration, birds stopped over two or three times for more than 3 days.

Conclusion This study for the first time showed where Red-spotted Bluethroats from European breeding populations stay during the boreal winter. This seems to be the first time that a passerine bird has been tracked along the Indo-European flyway.     

Marker-based adjustment of the additive relationship matrix for estimation of genetic parameters��an example using Eucalyptus cladocalyx

The effects of adjusting additive (numerator) relationship matrices (A) for inbreeding estimates taken from molecular markers were investigated using a small, model population of Eucalyptus cladocalyx. A number of individual-tree, mixed-models were compared, incorporating estimates of population- and family-level selfing and ancestral inbreeding applied either as average values to the entire population or as variable estimates for subpopulation and family groups. The consequences of ignoring inbreeding were inflated additive genetic variance estimates and underestimation of residual variance, with resulting inflation of heritability. We found models that correct for differential inbreeding at the subpopulation level give similar results to more complex ones including family-level estimates. Our analysis indicates that the commonly applied coefficient of relationship for first-generation eucalypt progeny of ρ = 1/2.5 appears to be quite suitable for correcting variance component and heritability estimates. However, if inbreeding is not specifically corrected for by adjustment of A, some minor rank changes of individual breeding values can occur, especially where levels of inbreeding vary among families, and some suboptimal selections and loss of genetic gain may ensue.     

Optimum allocation of test resources and comparison of breeding strategies for hybrid wheat

Key message

The use of a breeding strategy combining the evaluation of line per se with testcross performance maximizes annual selection gain for hybrid wheat breeding.

Abstract

Recent experimental studies confirmed a high commercial potential for hybrid wheat requiring the design of optimum breeding strategies. Our objectives were to (1) determine the optimum allocation of the type and number of testers, the number of test locations and the number of doubled haploid lines for different breeding strategies, (2) identify the best breeding strategy and (3) elaborate key parameters for an efficient hybrid wheat breeding program. We performed model calculations using the selection gain for grain yield as target variable to optimize the number of lines, testers and test locations in four different breeding strategies. A breeding strategy (BS2) combining the evaluation of line per se performance and general combining ability (GCA) had a far larger annual selection gain across all considered scenarios than a breeding strategy (BS1) focusing only on GCA. In the combined strategy, the production of testcross seed conducted in parallel with the first yield trial for line per se performance (BS2_rapid) resulted in a further increase of the annual selection gain. For the current situation in hybrid wheat, this relative superiority of the strategy BS2_rapid amounted to 67 % in annual selection gain compared to BS1. Varying a large number of parameters, we identified the high costs for hybrid seed production and the low variance of GCA in hybrid wheat breeding as key parameters limiting selection gain in BS2_rapid.     

Hybrid maize breeding with doubled haploids: III. Efficiency of early testing prior to doubled haploid production in two-stage selection for testcross performance

Early testing prior to doubled haploid (DH) production is a promising approach in hybrid maize breeding. We (1) determined the optimum allocation of the number of S₁ families, DH lines, and test locations for two different breeding schemes, (2) compared the maximum selection gain achievable under both breeding schemes, and (3) investigated limitations in the current method of DH production. Selection gain was calculated by numerical integration in two-stage breeding schemes with evaluation of testcross progenies of (1) DH lines in both stages (DHTC), or (2) S₁ families in the first and DH lines within S₁ families in the second stage (S₁TC-DHTC). Different assumptions were made regarding the budget, variance components, and time of DH production within S₁ families. Maximum selection gain in S₁TC-DHTC was about 10% larger than in DHTC, indicating the large potential of early testing prior to DH production. The optimum allocation of test resources in S₁TC-DHTC involved similar numbers of test locations and test candidates in both stages resulting in a large optimum number of S₁ families in the first stage and DH lines within the best two S₁ families in the second stage. The longer cycle length of S₁TC-DHTC can be compensated by haploid induction of individual S₁ plants instead of S₁ families. However, this reduces selection gain largely due to the current limitations in the DH technique. Substantial increases in haploid induction and chromosome doubling rates as well as reduction in costs of DH production would allow early testing of S₁ lines and subsequent production and testing of DH lines in a breeding scheme that combines high selection gain with a short cycle length. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Breeding ecology of a suburban population of Woodpigeons Columba palumbus in northwest England

Capsule Between 1981 and 2008 population size was stable, but there were negative trends in breeding parameters.

Aims To determine the current status and long‐term population trend of an isolated breeding population of Bearded Vultures Gypaetus barbatus (Corsica, Mediterranean).

Methods The total Bearded Vulture population was monitored between 1981 and 2008.

Results The current effective breeding population size of Bearded Vultures in Corsica is ten pairs/trios with a slight increase of one to two pairs since 1983. The population is currently estimated at 25 individuals. Breeding parameters (laying rate, breeding success and productivity) have decreased significantly over the full 28‐year study period, although the decrease was not significant when the data set was restricted to 1988–2008. A mean of 60.3% (n = 204) of pairs have laid, but this proportion is highly variable between years. Productivity has been very low (0.16 young/pair/year, n = 233). Breeding parameters of the Corsican population of Bearded Vultures are very low compared with those of other western European populations in the Pyrenees.

Conclusions This isolated insular population is of small size (eight to ten pairs/trios) but shows a stability of distribution and numbers, but low (and decreasing) breeding rates, making this insular population one the most threatened in Europe.     

Hybrid maize breeding with doubled haploids. IV. Number versus size of crosses and importance of parental selection in two-stage selection for testcross performance

Parental selection influences the gain from selection and the optimum allocation of test resources in breeding programs. We compared two hybrid maize (Zea mays L.) breeding schemes with evaluation of testcross progenies: (a) doubled haploid (DH) lines in both stages (DHTC) and (b) S₁ families in the first stage and DH lines within S₁ families in the second stage (S₁TC-DHTC). Our objectives were to (1) determine the optimum allocation regarding the number of crosses, S₁ families, DH lines, and test locations, (2) investigate the impact of parental selection on the optimum allocation and selection gain (ΔG), and (3) compare the maximum ΔG achievable with each breeding scheme. Selection gain was calculated by numerical integration. Different assumptions were made regarding the budget, variance components, correlation between the mean phenotypic performance of the parents and the mean genotypic value of the testcross performance of their progenies (ρ _P ), and the composition of the finally selected test candidates. In comparison with randomly chosen crosses, maximum ΔG was largely increased with parental selection in both breeding schemes. With an increasing correlation ρ _P , this superiority increased strongly, while the optimum number of crosses decreased in favor of an increased number of test candidates within crosses. Thus, concentration on few crosses among the best parental lines might be a promising approach for short-term success in advanced cycle breeding. Breeding scheme S₁TC-DHTC led to a larger ΔG but had a longer cycle length than DHTC. However, with further improvements in the DH technique and the realization of more than two generations per year, early testing of S₁ families prior to production of DH lines would become very attractive in hybrid maize breeding. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. T. Wegenast and C. F. H. Longin contributed equally to this work.     

Hybrid maize breeding with doubled haploids: V. Selection strategies for testcross performance with variable sizes of crosses and S1 families

In hybrid maize (Zea mays L.) breeding, doubled haploids (DH) are increasingly replacing inbreds developed by recurrent selfing. Doubled haploids may be developed directly from S₀ plants in the parental cross or via S₁ families. In both these breeding schemes, we examined 2 two-stage selecting strategies, i.e., considering or ignoring cross and family structure while selection among and within parental crosses and S₁ families. We examined the optimum allocation of resources to maximize the selection gain ΔG and the probability P(q) of identifying the q% best genotypes. Our specific objectives were to (1) determine the optimum number and size of crosses and S₁ families, as well as the optimum number of test environments and (2) identify the superior selection strategy. Selection was based on the evaluation of testcross progenies of (1) DH lines in both stages (DHTC) and (2) S₁ families in the first stage and of DH lines within S₁ families in the second stage (S₁TC-DHTC) with uniform and variable sizes of crosses and S₁ families. We developed and employed simulation programs for selection with variable sizes of crosses and S₁ families within crosses. The breeding schemes and selection strategies showed similar relative efficiency for both optimization criteria ΔG and P (0.1%). As compared with DHTC, S₁TC-DHTC had larger ΔG and P (0.1%), but a higher standard deviation of ΔG. The superiority of S₁TC-DHTC was increased when the selection was done among all DH lines ignoring their cross and family structure and using variable sizes of crosses and S₁ families. In DHTC, the best selection strategy was to ignore cross structures and use uniform size of crosses.     

Open-nucleus breeding strategies compared with population-wide positive assortative mating

Positive assortative mating (PAM) can enhance the additive genetic variance in a breeding population(BP). This increases the potential for gains in the production population (PP, selected subset of the BP) for recurrent selection programs in forest trees. The assortment of mates can be either: (1) by individual tree rank across the whole BP (PAM), or (2) trees of similar rank can be merged into larger hierarchical groups and then mated randomly within group ("open"-nucleus breeding,NB). The objective of this study was to compare PAM and NB in quantitative terms. The NB simulation model assumed two tiers (nucleus, main) with unrestricted migration between the tiers. Clonal tests were used to predict breeding values and test resources per mate were kept constant for all mates. Both gain and diversity were combined into a single selection criterion, "group-merit selection." Alternatives were compared over five breeding cycles by considering genetic gain and diversity in a selected PP established in a seed orchard. The assortment of mates in both alternatives enhanced additive variance and increased the additive effect in the BP, leading to additional gain in the PP. Gains generated under PAM always exceeded gains under NB. Thus, the main message from this study is that PAM in both the short- and long-term results in more gain at any target level of diversity in the PP (the breeder's target) than is achieved by the NB alternative. The optimum size of the nucleus varies with the desired level of seed orchard diversity. At lower target diversity, smaller nucleus sizes are favorable, while larger sizes result in more gain when seed orchard diversity is considered more important.     

Selection for uniformity in livestock by exploiting genetic heterogeneity of residual variance

In some situations, it is worthwhile to change not only the mean, but also the variability of traits by selection. Genetic variation in residual variance may be utilised to improve uniformity in livestock populations by selection. The objective was to investigate the effects of genetic parameters, breeding goal, number of progeny per sire and breeding scheme on selection responses in mean and variance when applying index selection. Genetic parameters were obtained from the literature. Economic values for the mean and variance were derived for some standard non-linear profit equations, e.g. for traits with an intermediate optimum. The economic value of variance was in most situations negative, indicating that selection for reduced variance increases profit. Predicted responses in residual variance after one generation of selection were large, in some cases when the number of progeny per sire was at least 50, by more than 10% of the current residual variance. Progeny testing schemes were more efficient than sib-testing schemes in decreasing residual variance. With optimum traits, selection pressure shifts gradually from the mean to the variance when approaching the optimum. Genetic improvement of uniformity is particularly interesting for traits where the current population mean is near an intermediate optimum.     

Long-term perspective of hybrid versus line breeding in wheat based on quantitative genetic theory

Key message

The predicted future yield potential of hybrids was competitive with lines in the near future, but on a long term the competitiveness of hybrids depends on a number of factors.

Abstract

The change from line to hybrid breeding in autogamous crops is a recent controversial discussion among scientists and breeders. Our objectives were to employ wheat as a model to: (1) deliver a theoretical framework for the comparison of the selection gain of hybrid versus line breeding; (2) elaborate key parameters affecting selection gain in this comparison; (3) and evaluate the potential to modify these parameters in applied breeding programs. We developed a prediction model for future yield potential in both breeding methods as the sum of the population mean and the expected selection gain. The expected selection gain was smaller in hybrid than in line breeding and depended strongly on the hybrid seed production costs and the genetic variance available in hybrid versus line breeding. Owing to heterosis, the predicted future yield potential of hybrids was competitive with lines in the near future. On a long term, however, the competitiveness of hybrid compared to line breeding is questionable and depends on a number of factors. However, market specifications and political reasons might justify the current high interest in hybrid wheat breeding.     

Long-distance migration timing of Tringa sandpipers adjusted to recent climate change

Capsule Evidence for earlier spring migration of Tringa sandpipers after warmer winters, but no clear pattern concerning autumn migration timing.

Aim To analyse the timing of migration of three Tringa sandpipers between 1966 and 2002 with respect to recent global warming on a local and a hemispheric scale.

Methods I analysed long-term migration timing variation in Greenshank Tringa nebularia, Spotted Redshank T. erythropus and Wood Sandpiper T. glareola at four Central European staging sites. Variation in passage onset, median and end per migration period was analysed using stepwise regression with respect to variation in (i) local abundance, residence time and age-dependent abundance as an estimate of breeding success and (ii) climate at the staging sites, snowmelt at the presumed central breeding area and the North Atlantic Oscillation (NAO).

Results All three species consistently showed an overall spring migration advance and autumn migration delay. Autumn passage timing varied with both climatic conditions at the breeding area and breeding success, while in 43% of all cases spring passage correlated with local and hemispheric climate variation.

Conclusion The distinction between population dynamic and climatic effects on timing of autumn migration requires separate data for local adult and juvenile passage or a larger sample of sites. In spring, the data strongly suggest a flexible response of migration timing to local weather conditions and the hemispheric variation of the North Atlantic Oscillation. This indicates that even long-distance migrants are able to adjust their overall migration pattern to fluctuating environmental conditions on a phenotypic basis.     

Breeding ecology and habitat selection of Merlin Falco columbarius in forested landscapes

Capsule: Long-term trends in Merlin Falco columbarius breeding performance remained stable during a period of extensive afforestation in Ireland, where Merlin predominantly select conifer plantations for nesting.

Aims: To determine breeding performance and habitat selection of Merlin in a landscape significantly altered by afforestation.

Methods: We compiled data on Merlin to determine long-term trends in breeding performance and to examine habitat selection in a country with one of the fastest rates of afforestation in Europe.

Results: Merlin predominantly nested in trees (99.5%; n?=?183 pairs), with a strong preference for conifer plantations, which accounted for over 12 times more nests than expected by random selection. Moors and heathland were strongly selected as land-uses adjacent to nest sites. Most nests were located within 10?m of the forest edge, and in forests aged between 31 and 40 years. Merlin showed positive selection for moors and heathland, peat bogs and natural grasslands within breeding territories, and breeding success was positively related to the proportion of these land-uses surrounding nests. Breeding was successful for 74% of nests (n?=?300), and mean productivity was 2.1 young per breeding attempt (n?=?265) between 1982 and 2014. Breeding parameters remained constant over the 33-year study period, despite an increase of more than 75% in forest cover during this time.

Conclusion: Merlin breeding performance showed no long-term effects of increased afforestation. Although Merlin predominantly nested in conifer plantations, the presence of nearby open suitable foraging habitats influenced nest site selection and breeding success. The nesting preference of Merlin makes them vulnerable to disturbance from forest operations, which requires mitigation.     

Torsional and Bending Rigidity of the Double Helix from Data on Small DNA Rings

Abstract

We have calculated the variance of equilibrium distribution of a circular wormlike polymer chain over the writhing number, ?(Wr)²?, as a function of the number of Kuhn statistical segments, n, For large n these data splice well with our earlier results obtained for a circular freely jointed polymer chain. Assuming that ?(ΔLk)²? = ?(ΔTw)²? + ?(Wr)²? we have compared our results with experimental data on the chain length dependence of the ?(ΔLk) ²? value recently obtained by Horowitz and Wang for small DNA rings. This comparison has shown an excellent agreement between theory and experiment and yielded a reliable estimate of the torsional and bending rigidity parameters. Namely, the torsional rigidity constant is C = 3.0·10^?19 erg cm, and the bending rigidity as expressed in terms of the DNA persistence length is a = 500 A. The obtained value of C agrees well with earlier estimates by Shore and Baldwin as well as by Horowitz and Wang whereas the a value is in accord with the data of Hagerman. We have found the data of Shore and Baldwin on the chain length dependence of the ?(ΔLk) ²? value to be entirely inconsistent with our theoretical results.     

Circumpolar variation in morphological characteristics of Greater White-fronted Geese Anser albifrons

Capsule Greater White-fronted Geese show significant variation in body size from sampling locations throughout their circumpolar breeding range.

Aims To determine the degree of geographical variation in body size of Greater White-fronted Geese and identify factors contributing to any apparent patterns in variation.

Methods Structural measures of >3000 geese from 16 breeding areas throughout the Holarctic breeding range of the species were compared statistically.

Results Palearctic forms varied clinally, and increased in size from the smallest forms on the Kanin and Taimyr peninsulas in western Eurasia to the largest forms breeding in the Anadyr Lowlands of eastern Chukotka. Clinal variation was less apparent in the Nearctic, as both the smallest form in the Nearctic and the largest form overall (the Tule Goose) were from different breeding areas in Alaska. The Tule Goose was 25% larger than the smallest form. Birds from Greenland (A. a. flavirostris) were the second largest, although only slightly larger than geese from several North American populations. Body size was not correlated with breeding latitude but was positively correlated with temperature on the breeding grounds, breeding habitat, and migration distance. Body mass of Greater White-fronted Geese from all populations remained relatively constant during the period of wing moult. Morphological distinctness of eastern and western Palearctic forms concurs with earlier findings of complete range disjunction.

Conclusions Patterns of morphological variation in Greater White-fronted Geese across the Holarctic can be generally attributed to adaptation to variable breeding environments, migration requirements, and phylo-geographical histories.     

Migration of the Little Ringed Plover Charadrius dubius breeding in South Sweden tracked by geolocators

Capsule Little Ringed Plovers breeding in South Sweden migrate towards the southeast in the autumn, via the Middle East, to winter in Saharan and sub-Saharan locations or in India, while the spring migration is more directly towards the north.

Aims To study the migration routes and wintering area of Little Ringed Plovers (Charadrius dubius) breeding in South Sweden, and to investigate the migration strategy and speed for this little studied shorebird.

Methods We use light-level geolocators to track the year-round movements of Little Ringed Plovers breeding in South Sweden.

Results Autumn migration proceeded towards the southeast, in three birds via lengthy stopovers in the Middle East, followed by movements towards the west and southwest to final winter destinations in Africa, while one male made a long stopover in northwestern Iran before migrating to India. The birds wintering in Africa probably stayed at freshwater locations in the Sahara or just south or north of the Sahara. Spring migration was more directly back to the breeding area. Overall migration speeds were similar during autumn and spring migration at about 189 and 209?km/day, respectively. The migration was carried out mainly as many short flights between stopovers. In particular, autumn migration was longer than the direct distance between breeding and wintering sites.

Conclusions This study shows that the geolocator method can successfully be used with relatively small (40?g) shorebirds. We found that a local population of Little Ringed Plover may have widely differing wintering sites (low connectivity), from sub-Saharan Africa to the Indian subcontinent. The migration strategy of the Little Ringed Plover, with multiple short flights, deviates from that of many other long-distance migrating shorebirds that, instead, make one or a few long flights.     

NEUTRAL THEORY OF QUANTITATIVE GENETIC VARIANCE IN AN ISLAND MODEL WITH LOCAL EXTINCTION AND COLONIZATION

Additive genetic variance maintained by mutation in a selectively neutral quantitative character is analyzed for an ideal population distributed on n islands, each with local effective size N, that exchange migrants at a small rate, m. In a stable population structure, the expected genetic variance maintained within islands is identical to that in a panmictic population of the same total size, regardless of the migration rate (m > 0). This result contrasts with Wright's classical conclusion, based on inbreeding coefficients, that at least one immigrant per island every other generation (Nm > ½) is necessary for the genetic variance within local populations to approach that under panmixia. The expected genetic variance maintained among islands is inversely proportional to m and increases with the number of islands, but is independent of N. Local extinction and colonization diminish the genetic variance maintained within islands by reducing the effective size of island populations through the founder effect, although the expected genetic variance within islands is nearly as large as that in a panmictic population of the same total effective size. If the founders of new colonies originate from more than one island, rates of local extinction and colonization larger than about twice the migration rate will substantially reduce the genetic variance maintained among islands. These results indicate the importance of mutation and migration in maintaining quantitative genetic variance within small local populations.     

Best linear unbiased prediction and optimum allocation of test resources in maize breeding with doubled haploids

With best linear unbiased prediction (BLUP), information from genetically related candidates is combined to obtain more precise estimates of genotypic values of test candidates and thereby increase progress from selection. We developed and applied theory and Monte Carlo simulations implementing BLUP in 2 two-stage maize breeding schemes and various selection strategies. Our objectives were to (1) derive analytical solutions of the mixed model equations under two breeding schemes, (2) determine the optimum allocation of test resources with BLUP under different assumptions regarding the variance component ratios for grain yield in maize, (3) compare the progress from selection using BLUP and conventional phenotypic selection based on mean performance solely of the candidates, and (4) analyze the potential of BLUP for further improving the progress from selection. The breeding schemes involved selection for testcross performance either of DH lines at both stages (DHTC) or of S₁ families at the first stage and DH lines at the second stage (S₁TC-DHTC). Our analytical solutions allowed much faster calculations of the optimum allocations and superseded matrix inversions to solve the mixed model equations. Compared to conventional phenotypic selection, the progress from selection was slightly higher with BLUP for both optimization criteria, namely the selection gain and the probability to select the best genotypes. The optimum allocation of test resources in S₁TC-DHTC involved ≥10 test locations at both stages, a low number of crosses (≤6) each with 100–300 S₁ families at the first stage, and 500–1,000 DH lines at the second stage. In breeding scheme DHTC, the optimum number of test candidates at the first stage was 5–10 times larger, whereas the number of test locations at the first stage and the number of test candidates at the second stage were strongly reduced compared to S₁TC-DHTC.     

Optimization of selection contribution and mate allocations in monoecious tree breeding populations

Background

The combination of optimized contribution dynamic selection and various mating schemes was investigated over seven generations for a typical tree breeding scenario. The allocation of mates was optimized using a simulated annealing algorithm for various object functions including random mating (RM), positive assortative mating (PAM) and minimization of pair-wise coancestry between mates (MCM) all combined with minimization of variance in family size and coancestry. The present study considered two levels of heritability (0.05 and 0.25), two restrictions on relatedness (group coancestry; 1 and 2%) and two maximum permissible numbers of crosses in each generation (100 and 400). The infinitesimal genetic model was used to simulate the genetic architecture of the trait that was the subject of selection. A framework of the long term genetic contribution of ancestors was used to examine the impacts of the mating schemes on population parameters.

Results

MCM schemes produced on average, an increased rate of genetic gain in the breeding population, although the difference between schemes was small but significant after seven generations (up to 7.1% more than obtained with RM). In addition, MCM reduced the level of inbreeding by as much as 37% compared with RM, although the rate of inbreeding was similar after three generations of selection. PAM schemes yielded levels of genetic gain similar to those produced by RM, but the increase in the level of inbreeding was substantial (up to 43%).

Conclusion

The main reason why MCM schemes yielded higher genetic gains was the improvement in managing the long term genetic contribution of founders in the population; this was achieved by connecting unrelated families. In addition, the accumulation of inbreeding was reduced by MCM schemes since the variance in long term genetic contributions of founders was smaller than in the other schemes. Consequently, by combining an MCM scheme with an algorithm that optimizes contributions of the selected individuals, a higher long term response is obtained while reducing the risk within the breeding program.     

Genetic Diversity of Iranian Accessions,Improved Lines of Chickpea (<Emphasis Type="Italic">Cicer arietinum L.</Emphasis>) and Their Wild Relatives by Using Simple Sequence Repeats

Biodiversity information in available germplasm is very useful for the success of any breeding program. To establish genetic diversity among 44 genotypes of chickpea comprising cultigen, landraces, internationally developed improved lines and wild relatives, genetic distances were evaluated using 19 simple sequence repeat markers with 100 marker loci. Estimation of the number of alleles per locus (n _a), the effective allele number (n _e), and Wright fixation index F were 6.25, 3.67, and 0.44, respectively. Polymorphism information content values ranged from 0.84 (locus NCPGR6 and TA135) to 0.44 (locus NCPGR7) with an average of 0.68. Dice’s coefficient similarity matrix for studied chickpea genotypes varied from 0.07 to 1.0 indicating a broader genetic base among genotypes studied. The highest similarity, 1.0, was observed between genotypes Sel 96TH11484 and Sel 96TH11485; while, the lowest, 0.07, was observed between genotypes Sel 95TH1716 and Azad. Based on the UPGMA clustering method, all genotypes were clustered in eight groups, which indicated the probable origin and region similarity of landraces and local Iran landraces over the other cultivars and wild species. It also represents a wide diversity among available germplasm. Analysis of molecular variance revealed that 41% of the total variance was due to differences among groups while 59% was due to differences within groups. The results of principal coordinate analysis approximately corresponded to those obtained through cluster analysis. Genetic variation detected in this study can be useful for selective breeding for specific traits and in enhancing the genetic base of breeding programs.     

Light stalks increase the precision and accuracy of non-breeding locations calculated from geolocator tags: a field test from a long-distance migrant

ABSTRACT

Capsule: There is a substantial gain in precision and accuracy of geolocator locations when using a light stalk.

Aims: Light stalks or tubes increase the accuracy of geolocators when tracking migrant birds because they reduce potential shading of the light sensor by feathers but may increase detrimental tag effects. We aimed to determine how adding light stalks to geolocator tags increased accuracy and precision of locations.

Methods: We quantified how precision and accuracy of geolocator locations was affected by comparing variation of sunrise and sunset times from tags with variable length light stalks (6 of 0?mm, 8 of 5?mm and 21 of 10?mm). Tags were fitted to Whinchats Saxicola rubetra in central Nigeria (the known location to compare accuracy), and variance in latitude and longitude of geolocator estimated locations were also compared across light stalk lengths during spring migration stationary locations, and at breeding sites in Eastern Europe, for both Geolight and FlightR methods.

Results: Without a light stalk, the standard deviation of sunset and sunrise times increased by 50% and 100%, respectively (i.e. less precise): confidence intervals for latitude were larger by about 4.3 degrees at non-breeding low latitudes and 1.8 degrees at stop-over latitudes, or confidence intervals for longitude were larger by 2.3 degrees, dependent on analysis method. Estimated sun elevation angles were significantly less accurate and so calculated non-breeding locations were significantly less accurate by about 8 degrees of latitude. Precision in sunrise, sunset times, latitude and longitude, was similar when using a 5?mm or 10?mm stalk.

Conclusions: The results show a substantial gain in precision and accuracy of low latitude geolocator locations when using a light stalk that brings the sensor above covering feathers. There is no advantage from longer light stalk lengths than those necessary to just expose the light sensor above the feathers, at least for small passerines.