Temperature response of litter and soil organic matter decomposition is determined by chemical composition of organic material

The global soil carbon pool is approximately three times larger than the contemporary atmospheric pool, therefore even minor changes to its integrity may have major implications for atmospheric CO₂ concentrations. While theory predicts that the chemical composition of organic matter should constitute a master control on the temperature response of its decomposition, this relationship has not yet been fully demonstrated. We used laboratory incubations of forest soil organic matter (SOM) and fresh litter material together with NMR spectroscopy to make this connection between organic chemical composition and temperature sensitivity of decomposition. Temperature response of decomposition in both fresh litter and SOM was directly related to the chemical composition of the constituent organic matter, explaining 90% and 70% of the variance in Q₁₀ in litter and SOM, respectively. The Q₁₀ of litter decreased with increasing proportions of aromatic and O‐aromatic compounds, and increased with increased contents of alkyl‐ and O‐alkyl carbons. In contrast, in SOM, decomposition was affected only by carbonyl compounds. To reveal why a certain group of organic chemical compounds affected the temperature sensitivity of organic matter decomposition in litter and SOM, a more detailed characterization of the ¹³C aromatic region using Heteronuclear Single Quantum Coherence (HSQC) was conducted. The results revealed considerable differences in the aromatic region between litter and SOM. This suggests that the correlation between chemical composition of organic matter and the temperature response of decomposition differed between litter and SOM. The temperature response of soil decomposition processes can thus be described by the chemical composition of its constituent organic matter, this paves the way for improved ecosystem modeling of biosphere feedbacks under a changing climate.     

Influence of soil organic matter decomposition on arbuscular mycorrhizal fungi in terms of asymbiotic hyphal growth and root colonization

Soil organic matter is known to influence arbuscular mycorrhizal (AM) fungi, but limited information is available on the chemical components in the organic matter causing these effects. We studied the influence of decomposing organic matter (pure cellulose and alfalfa shoot and root material) on AM fungi after 30, 100, and 300 days of decomposition in nonsterile soil with and without addition of mineral N and P. Decomposing organic matter affected maize root length colonized by the AM fungus Glomus claroideum in a similar manner as other plant growth parameters. Colonized root length was slightly increased by both nitrogen and phosphorus application and plant materials, but not by application of cellulose. In vitro hyphal growth of Glomus intraradices was increased by soil extracts from the treatments with all types of organic materials independently of mineral N and P application. Pyrolysis of soil samples from the different decomposition treatments revealed in total 266 recognizable organic compounds and in vitro hyphal growth of G. intraradices in soil extract positively correlated with 33 of these compounds. The strongest correlation was found with 3,4,5-trimethoxybenzoic acid methyl ester. This compound is a typical product of pyrolysis of phenolic compounds produced by angiosperm woody plants, but in our experiment, it was produced mainly from cellulose by some components of the soil microflora. In conclusion, our results indicate that mycelia of AM fungi are influenced by organic matter decomposition both via compounds released during the decomposition process and also by secondary metabolites produced by microorganisms involved in organic matter decomposition.     

Treatments of polluted emissions from incinerator gases: a succinct review

Due to the incomplete mineralisation of some organic compounds during the incineration of municipal solid waste, gaseous emissions are loaded with a large amount of particulate matter, undesirable elements and toxic molecules. Typically, an incinerator of urban solid waste produces large flows of hot gaseous emissions to be purified before being released into the atmosphere. In this paper, treatments of flue gas from a typical municipal waste incinerator are described. The first step is an energy recovery system through heat exchangers to make steam or hot water. Steam is used to produce electricity via a turbine. The economic balance of the total system is very often dependent on the heat recovery. The second step involves particle removal technologies. Different systems are available such as cyclones, scrubbers, electrostatic precipitators or baghouse filters. The third step is the removal of numerous molecule families such as acid compounds (SO_x, HCl, HF), nitrogen oxides (NO_x), metal species and many organic compounds. The latter include dioxins, furans and volatile organic compounds. Some treatment processes are described according to the pollutant family.     

Aerobic treatment of black olive wastewater and the effect of an ozonation stage

The reduction of the pollutant organic matter present in wastewaters generated in the black olive production process is studied by an aerobic degradation, and by the combination of two successive steps: an ozonation pretreatment followed by an aerobic degradation. In the single aerobic process, in addition to the biomass evolution which is followed during each experiment, the removal of the pollutant load is evaluated by means of global parameters which are directly related with the organic matter, as the chemical oxygen demand and the total phenolic compounds content. A kinetic study is performed by using the Monod model, which applied to the experimental data, provides the specific kinetic parameters of this model: the kinetic constant for the substrate decomposition rate, the cellular yield coefficient and the kinetic constant for the biomass decrease during the death phase of microorganisms. In the combined process, an ozonation pretreatment is conducted with experiments where the ozone partial pressure is varied, and an important reduction in the phenolic compounds is achieved. The kinetic parameters of the following aerobic degradation stage are also evaluated, and the effect of the chemical oxidation pretreatment on this biological stage is discussed.     

Wood transformation in dead-standing trees in the forest-tundra of Central Siberia

Changes in the composition of wood organic matter in dead-standing spruce and larch trees depending on the period after their death have been studied in the north of Central Siberia. The period after tree death has been estimated by means of cross-dating. The results show that changes in the composition of wood organic matter in 63% of cases are contingent on tree species. Wood decomposition in dead-standing trees is accompanied by an increase in the contents of alkali-soluble organic compounds. Lignin oxidation in larch begins approximately 80 years after tree death, whereas its transformation in spruce begins not earlier than after 100 years. In the forest-tundra of Central Siberia, the rate of wood organic matter transformation in dead-standing trees is one to two orders of magnitude lower than in fallen wood, which accounts for their role as a long-term store of carbon and mineral elements in these ecosystems.     

Changes in the chemical composition of alder,poplar and willow leaves during decomposition in a river

1. As there was a paucity of information on the aquatic decomposition of leaves of willow (Salix alba), poplar (Populus gr. nigra) and alder (Alnus glutinosa), the net-bag technique was used to study chemical changes in the leaves over a period of six months in the Garonne (France).
2. The disappearance rates of foliar organic matter were about similar for the three species (k = 0.0065 day^?1 for alder, k = 0.0054 day^?1 for poplar and k = 0.0050 day^?1 for willow). Changes in carbon amount were comparable to those of organic matter. Nitrogen and organic phosphorus accumulated during the first months of decomposition. The C/N ratios of foliar matter changed in the same way in the three species, falling steeply for the first month, then levelling off. Amounts of sugar disappeared very rapidly, particularly for alder and willow. Cellulose concentrations were constant throughout the whole decomposition process whilst an increase in the amounts of lignin was observed during the first months; however the latter could be due to an interference by microbial compounds.
3. The changes of some constituents, such as carbon, sugars and cellulose, were described with exponential or multiexponential models. Despite the very different initial ratios of C/N and lignin/N, these changes associated with leaf decomposition were similar for the three species.

     

Hydrography and hydrochemistry of brackish waters

Conclusions The purpose of this paper was to show that the hydrochemistry of brackish waters is closely connected with the hydrographic conditions of these waters and that chemical transformations in estuaries may exert an influence on open ocean waters. It has also been shown that many of the processes involved need a much more detailed study. Obviously we know far too little about the transformations of organic matter in estuaries and we can only guess about the changes of many inorganic chemical species.Studies of the estuarine environment have a great urgency, since conditions are rapidly modified by pollution. In many rivers the input of organic matter from sewage and of inorganic materials from industrial processes has greatly increased. Even now already it is very doubtful whether a study of the river Rhine, for example, is still useful from a geochemical point of view. It may of course, be important as a basis for the prevention of further pollution, but for geochemical processes studies in unpolluted rivers will be much more significant.It is also necessary to study many brackish water environments because of their great variability and since one environment provides an insight that the other does not.     

Enhanced characterization of the smell of death by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GCxGC-TOFMS)

Soon after death, the decay process of mammalian soft tissues begins and leads to the release of cadaveric volatile compounds in the surrounding environment. The study of postmortem decomposition products is an emerging field of study in forensic science. However, a better knowledge of the smell of death and its volatile constituents may have many applications in forensic sciences. Domestic pigs are the most widely used human body analogues in forensic experiments, mainly due to ethical restrictions. Indeed, decomposition trials on human corpses are restricted in many countries worldwide. This article reports on the use of comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry (GCxGC-TOFMS) for thanatochemistry applications. A total of 832 VOCs released by a decaying pig carcass in terrestrial ecosystem, i.e. a forest biotope, were identified by GCxGC-TOFMS. These postmortem compounds belong to many kinds of chemical class, mainly oxygen compounds (alcohols, acids, ketones, aldehydes, esters), sulfur and nitrogen compounds, aromatic compounds such as phenolic molecules and hydrocarbons. The use of GCxGC-TOFMS in study of postmortem volatile compounds instead of conventional GC-MS was successful.     

贵州山区土壤中微生物担是能源物质碳流动的源与汇

在传统的农业生态系统的研究中 ,主要精力放在营养物 (如Ｎ)上 ,认为它们是限制生产力的因素 ;而往往忽略了土壤中碳的重要性 ,认为收获不受Ｃ限制的影响。然而 ,碳循环中的有机碳的分解作用部分控制着出现在地表下和显露在地表上的农业过程[4]。土壤中所储存的有机质 ,其数量既反映土壤从植物残留物的输入所获得的有机质与微生物群落的能量和营养需求之间的平衡 ,又反映植物对营养物的需求与有机质分解作用之间的平衡。因此 ,土壤中碳的平衡能反映出有机质中能量物质的储存[5]。大部分由光合作用形成的碳 ,是通过地表下的生态系统来流动的[…     

Living organisms and the quantum-mechanical wave properties of matter

Heat capacity data for the solid chemical elements and for 10 amino acids from proteins, and Kopp's Law heat capacity values for the chemical elements, show that proteins have extremely low heat capacities compared to other substances. The type of quantum-mechanical interaction that is highly predominant in low-heat-capacity substances reveals the quantum wave properties of matter. Therefore, the quantum-mechanical wave properties of matter are highly predominant in proteins. Some speculations about the meaning of this result are examined and assessed.     

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

Key recent developments in litter decomposition research are reviewed. Long-term inter-site experiments indicate that temperature and moisture influence early rates of litter decomposition primarily by determining the plants present, suggesting that climate change effects will be small unless they alter the plant forms present. Thresholds may exist at which single factors control decay rate. Litter decomposes faster where the litter type naturally occurs. Elevated CO₂ concentrations have little effect on litter decomposition rates. Plant tissues are not decay-resistant; it is microbial and biochemical transformations of materials into novel recalcitrant compounds rather than selective preservation of recalcitrant compounds that creates stable organic matter. Altering single characteristics of litter will not substantially alter decomposition rates. Nitrogen addition frequently leads to greater stabilization into humus through a combination of chemical reactions and enzyme inhibition. To sequester more C in soil, we need to consider not how to slow decomposition, but rather how to divert more litter into humus through microbial and chemical reactions rather than allowing it to decompose. The optimal strategy is to have litter transformed into humic substances and then chemically or physically protected in mineral soil. Adding N through fertilization and N-fixing plants is a feasible means of stimulating humification.     

Functional and Structural Succession of Soil Microbial Communities below Decomposing Human Cadavers

The ecological succession of microbes during cadaver decomposition has garnered interest in both basic and applied research contexts (e.g. community assembly and dynamics; forensic indicator of time since death). Yet current understanding of microbial ecology during decomposition is almost entirely based on plant litter. We know very little about microbes recycling carcass-derived organic matter despite the unique decomposition processes. Our objective was to quantify the taxonomic and functional succession of microbial populations in soils below decomposing cadavers, testing the hypotheses that a) periods of increased activity during decomposition are associated with particular taxa; and b) human-associated taxa are introduced to soils, but do not persist outside their host. We collected soils from beneath four cadavers throughout decomposition, and analyzed soil chemistry, microbial activity and bacterial community structure. As expected, decomposition resulted in pulses of soil C and nutrients (particularly ammonia) and stimulated microbial activity. There was no change in total bacterial abundances, however we observed distinct changes in both function and community composition. During active decay (7 - 12 days postmortem), respiration and biomass production rates were high: the community was dominated by Proteobacteria (increased from 15.0 to 26.1% relative abundance) and Firmicutes (increased from 1.0 to 29.0%), with reduced Acidobacteria abundances (decreased from 30.4 to 9.8%). Once decay rates slowed (10 - 23 d postmortem), respiration was elevated, but biomass production rates dropped dramatically; this community with low growth efficiency was dominated by Firmicutes (increased to 50.9%) and other anaerobic taxa. Human-associated bacteria, including the obligately anaerobic Bacteroides, were detected at high concentrations in soil throughout decomposition, up to 198 d postmortem. Our results revealed the pattern of functional and compositional succession in soil microbial communities during decomposition of human-derived organic matter, provided insight into decomposition processes, and identified putative predictor populations for time since death estimation.     

Role of proteins in soil carbon and nitrogen storage: controls on persistence

Mechanisms of soil organic carbon (C) and nitrogen (N) stabilization are of great interest, due to the potential for increased CO₂ release from soil organic matter (SOM) to the atmosphere as a result of global warming, and because of the critical role of soil organic N in controlling plant productivity. Soil proteins are recognized increasingly as playing major roles in stabilization and destabilization of soil organic C and N. Two categories of proteins are proposed: detrital proteins that are released upon cell death and functional proteins that are actively released into the soil to fulfill specific functions. The latter include microbial surface-active proteins (e.g., hydrophobins, chaplins, SC15, glomalin), many of which have structures that promote their persistence in the soil, and extracellular enzymes, responsible for many decomposition and nutrient cycling transformations. Here we review information on the nature of soil proteins, particularly those of microbial origin, and on the factors that control protein persistence and turnover in the soil. We discuss first the intrinsic properties of the protein molecule that affect its stability, next possible extrinsic stabilizing influences that arise as the proteins interact with other soil constituents, and lastly controls on accessibility of proteins at coarser spatial scales involving microbial cells, clay particles, and soil aggregates. We conclude that research at the interface between soil science and microbial physiology will yield rapid advances in our understanding of soil proteins. We suggest as research priorities determining the relative abundance and turnover time (age) of microbial versus plant proteins and of functional microbial proteins, including surface-active compounds.     

Calorimetric measurement of phospholipid interaction with methyl-beta-cyclodextrin

Cyclodextrins are able to bind hydrophobic molecules in their interior cavity and as such have received a great deal of attention as carriers of cholesterol, lipophilic drugs, and other sparingly soluble compounds. Despite the importance of these biochemical applications, relatively little is known about the interactions of cyclodextrins with phospholipid membranes. Here we characterize the binding of randomly methylated beta-cyclodextrin (m beta CD) to 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) using right-angle light scattering and isothermal titration calorimetry. Existing models of lipophile-membrane interactions are inadequate to describe the observed binding; we introduce a modified chemical reaction model in which the chemical activity of the phospholipid is independent of its concentration. We find that an average of four m beta CD molecules bind to each POPC molecule with an enthalpy of reaction of 46 kJ mol(-1) and an equilibrium constant of 90 M(-3). These results are consistent with earlier qualitative observations and suggest that disruption of phospholipid membranes may be minimized if the concentration of m beta CD is kept below about 15 mM.     

Nitrogen and phosphor compounds in bottom sediments: mechanisms of accumulation,transformation and release

This paper is an overview of Russian literature dealing with the accumulation, the transformations and the release of phosphate and nitrogen compounds in a great number of Russian lakes and reservoirs. A considerable data bank has been analysed. Special attention is given to the relations of N- and P-accumulation with the input and transformation of organic carbon, as well as to the release mechanisms, often in relation to eutrophication of the lakes and reservoirs. It is shown that the major input of organic matter into the sediments comes from autochthonous material, and is usually > 70 %. The relative importance of phytoplankton and macrophytes as sources of organic matter is discussed; it appears that trophic state, depth and other factors may have a large influence on this ratio. In shallow eutrophic lakes macrophytes may be the source of organic matter, which source can amount to 1.5–2.5 times that of phytoplankton. It is also shown that the C/N ratio is not a good indicator of the source of the organic matter, because their C/N ratios often are not very different. The decomposition rate of organic matter was analysed; it depends on trophic state and other factors. Sediment N accumulation is mostly (> 90%) in organic form, and depends on nitrogen and organic matter inputs coming from phytoplankton or macrophytes. A correlation coefficient of 0.9–0.95 was found in 176 lakes. In 113 lakes the N accumulation was 0.11 x C accumulation, with C/N ratios between 7.4 and 12.9. Ammonification was rather constant in different groups of lakes; values were often about 20–25 mg m⁻² d⁻¹. The presence of the different forms of nitrogen in interstitial water and in adsorbed forms is discussed. The N in interstitial water is usually in the form of NH₃. Sediment P-accumulation is usually in inorganic form and is related to primary production. Three different groups of sediments could be distinguished with C/P ratios of 31–100, of 101–350 and > 350. In hard water lakes P sedimentation was found to be 0.3–0.5 times that in soft water lakes with comparable primary production. The relative occurrence of apatite, non-apatite and residual P in sediments was calculated. In the interstitial water the P concentration appeared to be controlled by the input and decomposition of organic matter. The concentration of phosphate dissolved in the interstitial water of the top 2 cm layer is often 10–100 times lower than that of the dissolved N. The concentrations of interstitial phosphate are from a few μgl⁻¹ up to 15 mgl⁻¹, but the higher concentrations occur only rarely. Different types of vertical profiles of P compounds in the sediments were shown to be related with the presence of an oxidised zone, the presence of clay etc. Autochthonous apatite and non-apatite phosphates are more mobile than the allochthonous ones and are in equilibrium with interstitial phosphate. Accumulation of autochthonous apatite in sediments is controlled by decomposition of organic matter and accumulation of carbonates.     

湿地枯落物分解及其对全球变化的响应

综述了当前湿地枯落物分解及其对全球变化响应的研究动态。湿地枯落物分解研究已随研究方法的改进而不断深化;当前湿地枯落物分解过程研究主要集中在有机质组分和元素含量变化特征的探讨上;湿地枯落物分解同时受生物因素（即枯落物性质以及参与分解的异养微生物和土壤动物的种类、数量和活性等）和非生物因素（即枯落物分解过程的外部环境条件,包括气候条件、水分条件、酸碱度与盐分条件以及湿地沉积的行为与特征等）的制约;模型已成为湿地枯落物分解研究的重要手段,对其研究也在不断深化。还讨论了湿地枯落物分解对于全球变化的响应,指出全球变暖、大气CO2浓度上升、干湿沉降及其化学组成改变可能对枯落物分解产生的直接、间接和综合影响。最后,指出了当前该领域研究尚存在的问题以及今后亟需加强的几个研究方面。     

Discovery of SB-705498: a potent, selective and orally bioavailable TRPV1 antagonist suitable for clinical development

Small molecule antagonists of the vanilloid receptor TRPV1 (also known as VR1) are disclosed. Pyrrolidinyl ureas such as 8 and 15 (SB-705498) emerged as lead compounds following optimisation of the previously described urea SB-452533. Pharmacological studies using electrophysiological and FLIPR-Ca2+-based assays showed that compounds such as 8 and 15 were potent antagonists versus the multiple chemical and physical modes of TRPV1 activation (namely capsaicin, acid and noxious heat). Furthermore, 15 possessed suitable developability properties to enable progression of this compound into in vivo studies and subsequently clinical development.     

Factors that affect the type of cell death induced by chemicals

Surveying about 1000 compounds, we found that several low molecular weight alpha, beta-unsaturated ketones induced non-apoptotic cell death characterized by the formation of autophagosomes, occasionally accompanied by mitochondrial shrinkage. The cytotoxic activity of these compounds was significantly reduced by the addition of N-acetyl-L-cysteine, suggesting their interaction with SH groups of intracellular targeted molecules (the so-called "non-sterically hindered Michael acceptor"). This suggests that the nature of the chemical structure as well as the type of target cells is another factor that determines the type of cell death induced by chemicals.     

Composition and functional properties of propolis (bee glue): A review

Propolis is a natural substance collected by honey bees from various plants such as, poplar, palm, pine, conifer secretions, gums, resins, mucilage and leaf buds. It is collected and brought very painstakingly by honey bees to be used for sealing cracks and crevices occurring in their hives. Originally, it as an antiseptic meant for preventing bee-hive from microbial infections along with preventing decomposition of intruders. Additionally, propolis has been used in folk medicine for centuries. The biological characteristics of propolis depend upon its chemical composition, plant sources, geographical zone and seasons. More than 300 compounds have been identified in propolis such as, phenolic compounds, aromatic acids, essential oils, waxes and amino acids. Many scientific articles are published every year in different international journals, and several groups of researchers have focused their attention on the chemical compounds and biological activity of propolis.     

Decomposition of soil organic matter from boreal black spruce forest: environmental and chemical controls

Black spruce forests are a dominant covertype in the boreal forest region, and they inhabit landscapes that span a wide range of hydrologic and thermal conditions. These forests often have large stores of soil organic carbon. Recent increases in temperature at northern latitudes may be stimulating decomposition rates of this soil carbon. It is unclear, however, how changes in environmental conditions influence decomposition in these systems, and if substrate controls of decomposition vary with hydrologic and thermal regime. We addressed these issues by investigating the effects of temperature, moisture, and organic matter chemical characteristics on decomposition of fibric soil horizons from three black spruce forest sites. The sites varied in drainage and permafrost, and included a “Well Drained” site where permafrost was absent, and “Moderately well Drained” and “Poorly Drained” sites where permafrost was present at about 0.5 m depth. Samples collected from each site were incubated at five different moisture contents (2, 25, 50, 75, and 100% saturation) and two different temperatures (10°C and 20°C) in a full factorial design for two months. Organic matter chemistry was analyzed using pyrolysis gas chromatography-mass spectrometry prior to incubation, and after incubation on soils held at 20°C, 50% saturation. Mean cumulative mineralization, normalized to initial carbon content, ranged from 0.2% to 4.7%, and was dependent on temperature, moisture, and site. The effect of temperature on mineralization was significantly influenced by moisture content, as mineralization was greatest at 20°C and 50–75% saturation. While the relative effects of temperature and moisture were similar for all soils, mineralization rates were significantly greater for samples from the “Well Drained” site compared to the other sites. Variations in the relative abundances of polysaccharide-derivatives and compounds of undetermined source (such as toluene, phenol, 4-methyl phenol, and several unidentifiable compounds) could account for approximately 44% of the variation in mineralization across all sites under ideal temperature and moisture conditions. Based on our results, changes in temperature and moisture likely have similar, additive effects on in situ soil organic matter (SOM) decomposition across a wide range of black spruce forest systems, while variations in SOM chemistry can lead to significant differences in decomposition rates within and among forest sites.