Estimation of pseudopeptide metal ion complexation tendencies by special MS methods, HPCE and circular dichroism

To obtain more insight into catalytic mechanisms of metallo enzymes and specific metal complexation by proteins we use linear and cyclic pseudopeptides as mimetics. Knowledge about tendencies of complex formation of different ligands with selected transition metal ions is an indispensable prerequisite for the development of homo- and hetero-dinuclear metallo enzyme mimetics. Three pseudotripeptide ligands were investigated with respect to formation tendency and properties of complexes with the transition metal ions Cu²⁺, Zn²⁺, Ni²⁺, Co²⁺ and Mn²⁺. To study complexation tendencies we applied different methods. One of the important prerequisites for the application in a screening of series of peptide ligands is the necessity for a minimal amount of substance. We used and compared certain masspectrometric methods for the estimation of a rank order of complexation of certain transition metal ions. We also applied spectrophotometric titration, circular dichroism measurements, capillary electrophoresis and pH-rate profile of catalytic activity in the attempt to evaluate complex formation tendencies. Except for the spectrophotometric pH-titration and the pH-profile of catalytic activity all methods were applicable, but each method has its advantages and disadvantages depending on the separation effect of the ligand from the metal complex, and depending on the spectroscopic properties of ligand and complex. The results regarding complex formation are compared to each other. Comparison of pairs by MALDI-TOF- and ESI-MS allows an estimation of the rank order of complexation tendency of one ligand with different metal ions and requires the least amount of substance. The other investigated methods provided additional information on structural properties of the formed complexes; however either they required too much pseudopeptide ligand or were not applicable for all transition metal ions used in this study.     

Chemical and functional characterization of metal-binding pseudotripeptides with different functionalized N-alkyl residues Dedicated to Professor Dr. Ernst-Gottfried Jaeger on occasion of his 65th birthday

Pseudotripeptide ligands with 4 different N-functionalized glycine residues were qualitatively, semiquantitatively and quantitatively tested for their complexation of the bivalent transition metal ions Zn²⁺, Cu²⁺, Co²⁺, Ni²⁺ and Mn²⁺. The functional side chains have different length and different groups available for complexation. MALDI-MS and ESI-MS were used for more qualitative or semiquantitative estimation of the complex formation tendencies. The found ranking differs by these two methods only for Zn²⁺ and Ni²⁺. For one of the pseudotripeptide ligands, the ligand L1, complex formation with certain transition metal was estimated quantitatively by potentiometric titration. The Zn-complex of that ligand polarizes bound water strongly, resulting in a low pK_a-value. Complexes of pseudotripeptide ligand L1 with certain metal ions were tested for their hydrolytic activity. The pseudo first order rate constants of the hydrolysis of the substrates 4-nitrophenyl acetate and bis(4-nitrophenyl)phosphate were compared to complexes with the same metal ions formed with a very well studied ligand from the literature, the 1,4,7,10-tetraaza cyclododecane (cyclen). The hydrolysis of the phosphate ester occurs very slowly compared to the acetate ester. No correlation exists between the estimated pK_a values of complexes formed from ligand L1 with different metal ions and the phosphate ester hydrolysis. The Ni ions give totally different hydrolytic activities for pseudotripeptide ligand L1 and cyclen. With one exception, the Ni-cyclen complex, all other complexes have only a low or moderate catalytic activity.     

Chemical and functional characterization of metal-binding pseudotripeptides with different functionalized N-alkyl residues Dedicated to Professor Dr. Ernst-Gottfried Jaeger on occasion of his 65th birthday

Summary Pseudotripeptide ligands with 4 different N-functionalized glycine residues were qualitatively, semiquantitatively and quantitatively tested for their complexation of the bivalent transition metal ions Zn²⁺, Cu²⁺, Co²⁺, Ni²⁺ and Mn²⁺. The functional side chains have different length and different groups available for complexation. MALDI-MS and ESI-MS were used for more qualitative or semiquantitative estimation of the complex formation tendencies. The found ranking differs by these two methods only for Zn²⁺ and Ni²⁺. For one of the pseudotripeptide ligands, the ligand L1, complex formation with certain transition metal was estimated quantitatively by potentiometric titration. The Zn-complex of that ligand polarizes bound water strongly, resulting in a low pK _a -value. Complexes of pseudotripeptide ligand L1 with certain metal ions were tested for their hydrolytic activity. The pseudo first order rate constants of the hydrolysis of the substrates 4-nitrophenyl acetate and bis(4-nitrophenyl)phosphate were compared to complexes with the same metal ions formed with a very well studied ligand from the literature, the 1,4,7,10-tetraaza cyclododecane (cyclen). The hydrolysis of the phosphate ester occurs very slowly compared to the acetate ester. No correlation exists between the estimated pK _a values of complexes formed from ligand L1 with different metal ions and the phosphate ester hydrolysis. The Ni ions give totally different hydrolytic activities for pseudotripeptide ligand L1 and cyclen. With one exception, the Ni-cyclen complex, all other complexes have only a low or moderate catalytic activity. Dedicated to Professor Dr. Ernst-Gottfried Jaeger on occasion of his 65th birthday.     

Transition metal complexes of a cyclic pseudo hexapeptide: synthesis,complex formation and catalytic activities

To contribute to a better understanding of metalloenzymes, we studied ion selectivity, complex formation tendencies and catalytic activities of linear and cyclic pseudopeptides. In this contribution, a linear and cyclic pseudo hexapeptide is described. The complex with transition metal ions and the sequence were designed using the programme COSMOS. Different routes of solid‐phase synthesis were performed and compared using anchoring by C‐terminus or a His side chain, using preformed pseudodipeptide building units or formation of N‐functionalized peptide bond during stepwise assembly. The different strategies were compared regarding cyclization tendency, yield and purity. Side‐chain anchoring to solid support favours the cyclization but leads to the formation of difficult to separate dioxopiperazine. Both routes require preformed building units. Complex‐formation tendencies and selectivity for certain bivalent transition metal ions were experimentally estimated and compared to ones predicted theoretically. CD measurements indicate conformational changes by complex formation with different metal ions. Catalytic activities on oxidation of catechol and hydrolysis of bis‐phosphate esters by some metal complexes of linear and cyclic peptide show only low catalytic activities compared to other model peptides and related metalloenzymes. The preference of the cyclic peptide for complexation of Ni²⁺ corresponds well to the predictions of COSMOS‐NMR force field calculations. Copyright © 2008 European Peptide Society and John Wiley & Sons, Ltd.     

A Computer-Aided Radiopharmaceutical Drug Design Study Using Ab Initio and Molecular Mechanics Methods

This is an investigation of technetium ligands and their complexes with [TcO]³⁺ using ab initio population analysis and molecular mechanics conformational searching methods. Calculated atomic electronic populations on the technetium atom in complexes with a number of ligands gauge the degree of covalent bonding between technetium and these ligands. Here a reduction in the positive charge on the [TcO]³⁺ moiety by complexation with a given ligand is correlated with covalent bonding. Our ab initio results suggest that ligands with more sulphur atoms have better covalent bonding to technetium than do other ligands. A conformational analysis of the uncomplexed ligands indicates that conformational reorganization before complexation correlates inversely with stable complex formation. This conformational analysis shows that ligands with ethylene carbonyl bridges have low energy conformations closer to the final complexation geometries than do ligands with ethylene, propylene or propylene carbonyl bridges. The presence of these low energy conformations facilitates a faster complexation of the ethylene carbonyl [TcO]³⁺ moiety. This result produces a kinetic explaination why ethylene carbonyl bridged ligands form stable complexes while many other ligands do not [1]. The conclusion is that kinetic and thermodynamic considerations play a role in stable complex formation between these ligands and technetium.     

Complexation of bisphosphonates with ytterbium(III): Application of phosphate and ATP detection assay based on Yb-pyrocatechol violet

The coordination chemistry of bisphosphonates with Yb³⁺ was investigated to evaluate the potential of the UV-vis based detection method using the Yb³⁺-pyrocatechol complexation reaction as a sensor for bisphosphonates. The complexation chemistry of Yb³⁺ with phosphate and ATP analogs was previously described (E. Gaidamauskas, K. Saejueng, A.A. Holder, S. Bharuah, B.A. Kashemirov, D.C. Crans, C.E. McKenna, J. Biol. Inorg. Chem. 13 (2008) 1291-1299), and we here studied the complexation chemistry of bisphosphonates in this system. The spectrophotometric assay yields direct evidence for formation of a 4:3 metal to ligand complex at neutral pH. Direct evidence for Yb³⁺:methylenebis(phosphonate) complexes with 1:1 and 1:2 stoichiometry was also obtained by potentiometry at acidic and basic pH. Direct evidence for complex formation was obtained using ¹H NMR spectroscopy although the stoichiometry was not accessed at neutral pH. Our results suggest that the spectroscopic observation of the YbPV complex can be used to conveniently measure concentrations of bisphosphonates down to 2-3 μM.     

Synthesis, photophysical characterisation and metal ion binding properties of new ligands containing anthracene chromophores

Two new fluorescent chemosensors for heavy metal ions have been synthesised and their photophysical properties have been investigated. They present a pyridyl-thioether-based binding site and the anthracene moiety as a chromophore. In the experimental conditions used, no evidence is found for the formation of complexes with Pb²⁺, Zn²⁺, Cd²⁺, and Ag⁺ ions. On the contrary, in acetonitrile solutions both ligands strongly bind Cu²⁺ and Hg²⁺ cations according to a 1:1 and a 1:2 (metal:ligand) stoichiometry. In these complexes, the intense luminescence typical of anthracene derivatives is almost completely quenched and this phenomenon can be mainly attributed to an intraligand electron transfer process from the anthracene chromophore to the complexed pyridine. These results are of interest for the development of new chemosensors for the design of efficient electronic tongues for the detection of transition metal ions.     

1D coordination network formed by a cadmium based pyridyl urea helical monomer

Herein, we report the metal complexation properties of a macrocyclic ligand (L) that contains three pyridines as well as three urea groups. Linear and strand like ligands are typically used to afford helical coordination polymer. Our reported macrocyclic ligand (L) has remarkable flexibility and can twist upon dative bond formation. Two macrocyclic ligands complex with three cadmium atoms to form a helicate monomeric structure [Cd₃L₂(H₂O)₆(CH₃CN)₂]⁶⁺, which extends to a 1D polymeric structure via hydrogen-bonding. We also investigated the binding property of this new ligand in solution by NMR and UV-Vis spectroscopy. These results together with diffusion NMR studies suggest that in solution this ligand also forms an oligomeric complex with cadmium.     

First-row transition metal complexes of a novel pentadentate amine/imine ligand containing a hexahydropyrimidine core

2-Methyl-2-(pyridin-2-yl)propane-1,3-diamine and formaldehyde are condensed to prepare the hexahydropyrimidine derivative, which is subsequently reacted with two equivalents of 2-vinylpyridine, to produce a novel, potentially pentadentate amine/imine ligand. Full NMR spectroscopic details are reported. The ligand, hexahydro-5-methyl-5-(pyridin-2-yl)-1,3-bis[2-(pyridin-2-yl)ethyl]pyrimidine, acts as a pentadentate in a series of first-row transition metal complexes (M = Ni²⁺, Fe²⁺, Zn²⁺, Cu²⁺) but is tridentate towards Mn²⁺, in the corresponding dibromido complex. Single-crystal X-ray structure analyses reveal the metal ions to be hexacoordinate in the case of M = Ni²⁺, Fe²⁺, with and additional aqua or halido (Br⁻, Cl⁻) ligand, or pentacoordinate (M = Zn²⁺, Cu²⁺, Mn²⁺). Ferric complexes were not obtained, neither from complexation experiments employing iron(III), nor from oxidations using the iron(II) complex, and hydrogen peroxide or iodosylbenzene. In the case of the latter reactions, mass spectrometric data indicate oxidation of the hexahydropyrimidine core, with concomitant decomplexation of the ligand.     

Fluorescence quenching and bonding properties of some hydroxamic acid derivatives by iron(III) and manganese(II)

Spectrophotometric investigations of highly fluorescent metal chelating molecules are of relevance due to their potential application in novel, selective fluorescence‐based sensors. Benzene and naphthalene chromophores are highly fluorescent while hydroxamic acids are widely used as ligands for complexation of transition metals. In order to develop fluorescence probes, several phenyl derivatives of N‐phenylbenzohydroxamic acid and an aminodihydroxamic acid linked with a naphthalene chromophore were synthesized and their selective ionophoric properties towards iron(III) and manganese(II) ions were investigated using fluorescence and absorption spectroscopy. Both methods confirm the formation of 1:1 and 1:2 complexes for iron(III) and a 1:1 complex for manganese(II). The complex that is formed depends on the concentration of the ligand and pH of the medium. The amino dihydroxamic acid exhibits a prominent selectivity towards iron(III) with a two‐step 1:1 and 1:2 quenching mechanism at pH 3 and towards manganese(II) with a 1:1 quenching mechanism at a probe concentration of 1 × 10^?5 mol dm^?3 at pH 9.5 The logarithm of overall formation constants of 1:1 and 1:2 complexes of iron(III) were estimated as 3.30 and 9.05, respectively. Copyright © 2008 John Wiley & Sons, Ltd.     

Synthesis, characterization, fluorescence and computational studies of new Cu, Ni and Hg complexes with emissive thienylbenzoxazolyl-alanine ligands

The interaction of four fluorescent compounds containing thiophene and benzoxazole moieties combined with an alanine residue with alkaline, alkaline-earth, transition and post-transition metal ions was explored. The highly fluorescent heterocyclic alanine derivatives are strongly quenched in the solid state after complexation with the paramagnetic metal ions Cu²⁺ and Ni²⁺, and with the diamagnetic Hg²⁺. Absorption and steady-state fluorescence titrations reveal a selective interaction with Cu²⁺, Ni²⁺ and Hg²⁺. In all cases the formation of mononuclear or dinuclear metal complexes in solid state and in solution are postulated. DFT calculations on the mercury(II) complexes confirm the formation of dinuclear species. Our results suggest that one metal ion is coordinated by the chelate group formed by the amine and the protonated carboxylic groups present in the amino acid residue while a second metal ion is directly linked to the chromophore. As parent compound, L4 shows no interaction with Cu²⁺ and Ni²⁺ salts. However, the interaction with Hg²⁺ induces a strong quenching and a red shift of the fluorescence emission.     

Complex formation with alkali and alkaline earth metal ions of cyclic octapeptides,cyclo(Phe-Pro)4, cyclo(Leu-Pro)4, and cyclo[Lys(Z)-Pro]4

Complex formation with alkali and alkaline earth metal ions of cyclic octapeptides, cyclo(Phe-Pro)₄, cyclo(Leu-Pro)₄, and cyclo[Lys(Z)-Pro]₄ was investigated in relation to conformation. In an alcohol solution, cyclo(Phe-Pro)₄ did not form complexes. However, cyclo(Leu-Pro)₄ and cyclo[Lys(Z)-Pro]₄ formed complexes selectively with Ba²⁺ and Ca²⁺ ions. Changing the solvent from alcohol to acetonitrile, the complexation behavior was very different. In acetonitrile, cyclo(Phe-Pro)₄ was found to form a complex with Ba²⁺, and CD spectra of cyclo(Leu-Pro)₄ and cyclo[Lys(Z)-Pro]₄ changed sharply on complexation with K⁺. Rate constants of the complex formation between the cyclic octapeptides and metal salts were in the range of 0.7–12 L mol^?1 min^?1 in an alcohol solution. One of the two types of complex formation in acetonitrile was much faster than that in an alcohol solution.     

Theoretical investigations of the experimentally observed selectivity of a cobalt imprinted polymer

A cobalt imprinted polymer synthesised, for reducing the volume of radioactive waste generated during nuclear reactor decontaminations, using vinylbenzyl iminodiacetate (VbIDA) as the functional ligand, has been found to be selective for cobaltous ions over excess ferrous ions. The selectivity of the polymer has been investigated through theoretical calculation of the formation energies of complexes involved by using the ab-initio density functional theory (DFT) code SIESTA (Spanish Initiative for Electronic Simulations with Thousands of Atoms). The formation energies of complexes of Fe²⁺, Co²⁺, Cu²⁺ and Ni²⁺ with the free functional ligands as well as with ligands attached to the crosslinkers have been calculated. The calculations revealed that the ferrous forms an unstable complex with the ligands attached to the crosslinkers. The formation energy calculation results were found to corroborate the experimentally observed selectivity order.     

Synthesis and characterization of glucosyl-curcuminoids as Fe3+ suppliers in the treatment of iron deficiency

The Fe³⁺ chelating ability of some curcumin glucosyl derivatives (Glc-H; Glc-OH; Glc-OCH₃) is tested by means of UV and NMR study. The pK _a values of the ligands and the overall stability constants of Fe³⁺ and Ga³⁺ complexes are evaluated from UV spectra. The only metal binding site of the ligand is the β-diketo moiety in the keto-enolic form; the glucosyl moiety does not interact with metal ion but it contributes to the stability of metal/ligand 1:2 complexes by means of hydrophilic interactions. These glucosyl derivatives are able to bind Fe³⁺ in a wide pH rage, forming complex species thermodynamically more stable than those of other ligands commonly used in the treatment of iron deficiency. In addition they demonstrate to have a poor affinity for competitive biological metal ions such as Ca²⁺. All ligands and their iron complexes have a good lypophilicity (log P > −0.7) suggesting an efficient gastrointestinal absorption in view of their possible use as iron supplements in oral therapy. The ligand molecules are also tested for their antioxidant properties in “ex vivo” biological system.     

Relaxation studies on complex formation of macrocyclic and open chain antibiotics with monovalent cations

The stability constants for the 1 : 1 complexes of macrocyclic antibiotics (nonactin, monactin, dinactin and trinactin) with Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺, NH⁺₄ and for the Na⁺-complexes with the open chain compounds nigericin and monensin in methanol solution have been determined. The relaxation amplitude method was employed to obtain both the equilibrium constants and the enthalpies of reaction. The kinetics were studied with the help of temperature-jump, electric-field pulse and ultrasonic absorption techniques. Although complex formation of the metal ions with the antibiotics involves multidentate ligand chelation, the formation rates are in general very high, i.e. close to the limits imposed for diffusion controlled processes. The data for the macrotetrolides indicate the existence of conformational transition prior to complexation. A sequential substitution or “redressing” mechanism is proposed which is in accord with the high rates of complex formation. The selectivity patterns, as expressed by the equilibrium constants, are similar to those observed for the transport of metal ions across membranes in presence of the antibiotics. Selectivity results from an optimal balance between the strength of metal ion solvation and the stability of the individual metal complex, which in turn is governed by the conformational flexibility of the antibiotics.     

The macrocyclic and cryptate effect. 4. Complexation of cobalt(II) and nickel(II) by noncyclic,monocyclic and bicyclic ligands in methanol

The complex formation of Co²⁺ and Ni²⁺ with various noncyclic ligands, aza crown ethers and cryptands has been studied in methanol by means of calorimetric and potentiometric titrations. The reactions of both cations with aza crown ethers were endothermic. This surprising result can be explained by structural changes of the ligand during the complexation process. The thermograms for the titration of Ni²⁺ solutions with cryptands show two different reactions. On the basis of further results from potentiometric titrations, a two-step reaction mechanism is discussed. The macrocyclic and the cryptate effect are only caused by favourable entropic changes.     

Synthesis and antimalarial activity of metal complexes of cross-bridged tetraazamacrocyclic ligands

Using transition metals such as manganese(II), iron(II), cobalt(II), nickel(II), copper(II), and zinc(II), several new metal complexes of cross-bridged tetraazamacrocyclic chelators namely, cyclen- and cyclam-analogs with benzyl groups, were synthesized and screened for in vitro antimalarial activity against chloroquine-resistant (W2) and chloroquine-sensitive (D6) strains of Plasmodium falciparum. The metal-free chelators tested showed little or no antimalarial activity. All the metal complexes of the dibenzyl cross-bridged cyclam ligand exhibited potent antimalarial activity. The Mn²⁺ complex of this ligand was the most potent with IC₅₀s of 0.127 and 0.157 μM against the chloroquine-sensitive (D6) and chloroquine-resistant (W2) P. falciparum strains, respectively. In general, the dibenzyl hydrophobic ligands showed better anti-malarial activity compared to the activity of monobenzyl ligands, potentially because of their higher lipophilicity and thus better cell penetration ability. The higher antimalarial activity displayed by the manganese complex for the cyclam ligand in comparison to that of the cyclen, correlates with the larger pocket of cyclam compared to that of cyclen which produces a more stable complex with the Mn²⁺. Few of the Cu²⁺ and Fe²⁺ complexes also showed improvement in activity but Ni²⁺, Co²⁺ and Zn²⁺ complexes did not show any improvement in activity upon the metal-free ligands for anti-malarial development.     

The invariant glutamate of human PrimPol DxE motif is critical for its Mn2+-dependent distinctive activities

PrimPol is a human primase/polymerase specialized in downstream repriming of stalled forks during both nuclear and mitochondrial DNA replication. Like most primases and polymerases, PrimPol requires divalent metal cations, as Mg²⁺ or Mn²⁺, used as cofactors for catalysis. However, little is known about the consequences of using these two metal cofactors in combination, which would be the most physiological scenario during PrimPol-mediated reactions, and the individual contribution of the putative carboxylate residues (Asp¹¹⁴, Glu¹¹⁶ and Asp²⁸⁰) acting as metal ligands. By site-directed mutagenesis in human PrimPol, we confirmed the catalytic relevance of these three carboxylates, and identified Glu¹¹⁶ as a relevant enhancer of distinctive PrimPol reactions, which are highly dependent on Mn²⁺. Herein, we evidenced that PrimPol Glu¹¹⁶ contributes to error-prone tolerance of 8oxodG more markedly when both Mg²⁺ and Mn²⁺ ions are present. Moreover, Glu¹¹⁶ was important for TLS events mediated by primer/template realignments, and crucial to achieving an optimal primase activity, processes in which Mn²⁺ is largely preferred. EMSA analysis of PrimPol:ssDNA:dNTP pre-ternary complex indicated a critical role of each metal ligand, and a significant impairment when Glu¹¹⁶ was changed to a more conventional aspartate. These data suggest that PrimPol active site requires a specific motif A (DxE) to favor the use of Mn²⁺ ions in order to achieve optimal incoming nucleotide stabilization, especially required during primer synthesis.     

Interactions of Some Divalent Metal Ions with Thymine and Uracil Thiosemicarbazide Derivatives

The study of interactions between metal ions and nucleobases, nucleosides, nucleotides, or nucleic acids has become an active research area in chemical, biological, and therapeutic fields. In this respect, the coordination behavior of nucleobase derivatives to transition metals was studied in order to get a better understanding about DNA-metal interactions in in vitro and in vivo systems. Two nucleobase derivatives, 3-benzoyl-1-[3-(thymine-1-yl)propamido]thiourea and 3-benzoyl-1-[3-(uracil-1-yl)propamido]thiourea, were synthesized and their dissociation constants were determined at different temperatures and 0.3 ionic strength. Potentiometric studies were carried out on the interaction of the derivatives towards some divalent metals in 50% v/v ethanol-water containing 0.3 mol.dm^?3 KCl, at five different temperatures. The formation constants of the metal complexes for both ligands follow the order: Cu²⁺ > Ni²⁺ > Co²⁺ > Zn²⁺ > Pb²⁺ > Cd²⁺ > Mn²⁺. The thermodynamic parameters were estimated; the complexation process has been found to be spontaneous, exothermic, and entropically favorable.     

Vanadyl as a Probe of the Function of the F1-ATPase-Mg2+ Cofactor

The Mg²⁺ dependent asymmetry of the F₁-ATPase catalytic sites leads to the differences in affinity for nucleotides and is an essential component of the binding-change mechanism. Changes in metal ligands during the catalytic cycle responsible for this asymmetry were characterized by vanadyl (V ^IV + O)²⁺, a functional surrogate for Mg²⁺. The ⁵¹V-hyperfine parameters derived from EPR spectra of VO²⁺ bound to specific sites on F₁ provide a direct probe of the metal ligands. Site-directed mutations of metal ligand residues cause measurable changes in the ⁵¹V-hyperfine parameters of the bound VO²⁺, thereby providing a means to identification. Initial binding of the metal–nucleotide to the low-affinity catalytic site conformation results in metal coordination by hydroxyl groups from the P-loop threonine and catch-loop threonine. Upon conversion to the high-affinity conformation, carboxyl groups from the Walker homology B aspartate and MF₁E197 become ligands in lieu of the hydroxyl groups.