Killer phenotype of indigenous yeasts isolated from Argentinian wine cellars and their potential starter cultures for winemaking

Of 31 yeasts, from different surfaces of two cellars from the northwest region of Argentina, 11 expressed killer activity against the sensitive strain Saccharomyces cerevisiae P351. Five of these killer yeasts were identified as S. cerevisiae by phenotypic tests and PCR-RFLP analysis. Two S. cerevisiae killer strains, Cf5 and Cf8, were selected based on their excellent kinetic and enological properties as potential autochthonous mixed starter cultures to be used during wine fermentation. They could dominate the natural microbiota in fermentation vats and keep the typical sensorial characteristics of the wine of this region.     

The relationship of the population dynamics of gamasid mites with the population dynamics of their murine rodent hosts in the Sikhote-Alin]

22,500 mites were collected from 4515 rodents over a period of 5 years in the Sikhote-Alin reserve. The abundance dynamics of 4, out of 5, most numerous species of mites (Laelaps pavlovskyi, L. clethrionomydis, Eulaelaps stabularis, Haemogamasus serdjukovae) depends on the cyclic fluctuations in the number of rodents. A direct connection between the annual and, to some extent, seasonal dynamics of the abundance of parasites and that of their hosts is most distinct in L. pavlovskyi, an epizoon parasite of the large Japanese field mouse. At the same time the abundance of Hg. ambulans, a multihost parasite of small mammals, does not depend on the number of animals. Certain regularities in the abundance dynamics of gamasid mites in connection with that of their hosts, rodents, is discussed on the basis of obtained material and literary data.     

Polymer dynamics as a mechanistic model for the flow-independent viscoelasticity of cartilage

The initial, rapid, flow independent, apparent stress relaxation of articular cartilage disks deformed by unconfined compressive displacement is shown to be consistent with the theory of polymer dynamics. A relaxation function for polymers based upon a mechanistic model of molecular interaction (reptation) appropriately approximated early, flow independent relaxation of stress. It is argued that the theory of polymer dynamics, with its reliance on mechanistic models of molecular interaction, is an appropriate technique for application to and the understanding of rapid, flow independent, stress relaxation in cartilage.     

Analysing the Moran effect and dispersal: their significance and interaction in synchronous population dynamics

Population synchrony over various geographical scales is known from a large number of taxa. Three main hypotheses have been put forward as explanations to this phenomenon. First, correlated environmental disturbances (so called Moran effect). Moran showed that at least for linear models, the population synchrony would exactly match that of the corresponding environment. Second, the migration, or dispersal, of individuals is liable to cause population synchrony. Third, nomadic predators have been proposed as a synchronising mechanism. In this paper, I analyse the first two explanations by linearizing a general population model with spatial structure. From this linear approximation I derive an expression for the population synchrony. The major results are: 1) Population synchrony can vary significantly depending on the timing of the population census. 2) The environmental correlation is always important. It sets the 'base level' of synchrony. 3) Dispersal is only an effective synchronising mechanism when the local dynamics are at least close to unstable. 4) These results are valid even in a model with delayed density dependence – with possibly cyclic dynamics. Time lag structure has little effect on synchrony. Some of the predictions presented here are supported by data from the literature.     

An apparatus for the isolated propagation of foliar pathogens and their hosts

Epidemiological studies, especially of obligate pathogens, often require healthy test plants and the incubation of infections in isolation. Ventilation of glasshouses with spore-free air is helpful but costly, and provides only a few discrete environments. The apparatus described is cheap and simple and enables many separate covered plant pots to be supplied with filtered air. It was designed to help measure the incubation time and frequency of viable conidia of Erysiphe graminis, but may also be useful for studying other pathogens and, with some modification, for plant breeding or quarantine.     

Quantifying the dynamics of prion infection: a bifurcation analysis of Laurent's model

Laurent (1996a, Médecine/sciences12, 774-785; 1996b, Biochem. J.318, 35-39; 1998, Bio-phys. Chem.72, 211-222) proposed a model for the dynamics of diseases of the central nervous system caused by prions. It is based on the protein-only hypothesis (Prusiner et al., 1981, Proc. Natl. Acad. Sci. U.S.A.78, 6675-6679), which assumes that infection can be spread by particular proteins (prions) that can exist in two forms that share the same sequence, but have a different structure. The normal form is harmless, while the infectious isoform of the prion protein catalyses a transconformation from the native isoform to itself within a specialized compartment of the brain cells. This paper systematically explores the model behavior with the aim of quantifying the fundamental parameters characterizing the dynamics of prion infection. To this end we use data from the literature to fix orders of magnitude for the rates of synthesis and degradation of the native form of prion protein and for the shape of the autocatalytic function. The dynamical behavior is classified with respect to two unknown parameters (bifurcation analysis): the rate of spontaneous transconformation and the rate of output of the infectious isoform from the specialized compartment. We thus find that the bistability properties evidenced by Laurent are confined to a certain range of parameters and that permanent oscillations of the two isoforms concentrations are possible. The bifurcation analysis allows us to estimate approximate ranges for the values of the two unknown parameters and consequently to derive incubation times and compare them with actual data for hamster. Also, our study predicts that the output rate of the infectious isoform is relatively insensitive to variations of model parameters.     

Application and evaluation of the phage resistance- and bacteriocin-encoding plasmid pMRC01 for the improvement of dairy starter cultures.

The conjugative 63-kb lactococcal plasmid pMRC01 encodes bacteriophage resistance and production of and immunity to a novel broad-spectrum bacteriocin, designated lacticin 3147 (M.P. Ryan, M.C. Rea, C. Hill, and R.P. Ross, Appl. Environ. Microbiol. 62:612-619, 1996). The phage resistance is an abortive infection mechanism which targets the phage-lytic cycle at a point after phage DNA replication. By using the genetic determinants for bacteriocin immunity encoded on the plasmid as a selectable marker, pMRC01 was transferred into a variety of lactococcal starter cultures to improve their phage resistance properties. Selection of resulting transconjugants was performed directly on solid media containing the bacteriocin. Since the starters exhibited no spontaneous resistance to the bacteriocin as a selective agent, this allowed the assessment of the transfer of the naturally occurring plasmid into a range of dairy starter cultures. Results demonstrate that efficient transfer of the plasmid was dependent on the particular recipient strain chosen, and while high-frequency transfer (10(-3) per donor) of the entire plasmid to some strains was observed, the plasmid could not be conjugated into a number of starters. In this study, transconjugants for a number of lactococcal starter cultures which are phage resistant and bacteriocin producing have been generated. This bacteriocin-producing phenotype allows for control of nonstarter flora in food fermentations, and the phage resistance property protects the starter cultures in industry. The 63-kb plasmid was also successfully transferred into Lactococcus lactis MG1614 cells via electroporation.     

A model for aggregation-dispersion dynamics of a population

An important feature that distinguishes the movement of living systems from the random motion of inorganic material is a delicate balance between spreading and concentrating. This movement is based on the kind of interactions which a bacterial colony may establish during migration. Namely, the antagonistic effects of dispersal which take place preferentially down the population gradient and the tendency in grouping together. In this work a model is proposed which considers these effects. The phase plane analysis and the numerical calculations reveal the existence of stable sharp wave front solutions. The speed of the wave front is modulated by the compromise between the tendencies of spreading and aggregating. The results obtained were compared with experimental observations in cultures of Escherichia coli and Streptococcus faecalis. The agreement between both types of results supports the hypothesis on which the model was based.     

A mechanistic model for understanding invasions: using the environment as a predictor of population success

Aim We set out to develop a temperature‐ and salinity‐dependent mechanistic population model for copepods that can be used to understand the role of environmental parameters in population growth or decline. Models are an important tool for understanding the dynamics of invasive species; our model can be used to determine an organism’s niche and explore the potential for invasion of a new habitat. Location Strait of Georgia, British Columbia, Canada. Methods We developed a birth rate model to determine the environmental niche for an estuarine copepod. We conducted laboratory experiments to estimate demographic parameters over a range of temperatures and salinities for Eurytemora affinis collected from the Nanaimo Estuary, British Columbia (BC). The parameterized model was then used to explore what environmental conditions resulted in population growth vs. decline. We then re‐parameterized our model using previously published data for E. affinis collected in the Seine Estuary, France (SE), and compared the dynamics of the two populations. Results We established regions in temperature–salinity space where E. affinis populations from BC would likely grow vs. decline. In general, the population from BC exhibited positive and higher intrinsic growth rates at higher temperatures and salinities. The population from SE exhibited positive and higher growth rates with increasing temperature and decreasing salinity. These different relationships with environmental parameters resulted in predictions of complex interactions among temperature, salinity and growth rates if the two subspecies inhabited the same estuary. Main conclusions We developed a new mechanistic model that describes population dynamics in terms of temperature and salinity. This model may prove especially useful in predicting the potential for invasion by copepods transported to Pacific north‐west estuaries via ballast water, or in any system where an ecosystem is subject to invasion by a species that shares demographic characteristics with an established (sub)species.     

Molecular characterization of Lactobacillus curvatus and Lact. sake isolated from sauerkraut and their application in sausage fermentations

Lactobacillus curvatus and Lact. sake are best adapted to meat fermentations and dominate the flora during the whole process. In fermenting sauerkraut, Leuconostoc mesenteroides subsp. mesenteroides is the major organism only during the early phase. In this environment Lact. curvatus and Lact. sake provide up to 50% of the microbial flora especially of the later phase, depending on the process conditions. Strains of Lact. curvatus and Lact. sake isolated from fermenting sauerkraut were identified by hybridization with species specific 23S rRNA-targeted oligonucleotide probes and further characterized. In 59 of 72 strains, plasmid DNA was detected. Small cryptic plasmids of 20 strains were found to be homologous with pLc2, a 2·6 kb plasmid from Lact. curvatus LTH683, which was originally isolated from meat. The ability to compete was investigated in fermenting sausages of two strains each of Lact. curvatus and Lact. sake isolated from sauerkraut. One strain each of Lact. curvatus and Lact sake was found to outnumber the meat-borne flora and govern the process.     

Carriers for starter cultures for the production of garri,a fermented food derived from cassava

Garri is a popular food in Nigeria derived from the fermentation of the mash obtained from the enlarged root of the cassava plant, Manihot esculenta Crantz. As currently produced, the mash used for garri production is spontaneously fermented; on account of this, there is great variability in the organoleptic properties and the quantities of residual cyanide in the garri from Nigeria. The use of starter cultures can help ensure uniformity in these properties if dry carriers can be found on which the fermentative organisms can survive for extended periods so as to facilitate the transportation of their carriers to the many small and scattered garri producers. We therefore studied the survival, singly or mixed, on dry starchy substrates derived from locally available crops, of Lactobacillus coryneformis, Lact. delbruckii, and Saccharomyces sp., which are associated with garri production, as carriers for these organisms. After 16 weeks of storage, between 75% and 85% of the organisms survived on yam, coco-yam, cassava in that order, whereas between 40 and 65% survived on rice and garri. Refrigeration at 4 °C did not improve the survival of the organisms, when compared to room temperature (30 °C) for the organisms stores on yam, coco-yam, and cassava. However where the organisms were stored on rice and garri, refrigeration improved the survivability of the organisms by between 10 and 20%.     

A mechanistic model for interference and Allee effect in the predator population

We present the results of simulations in an individual-based model describing spatial movement and predator-prey interaction within a closed rectangular habitat. Movement of each individual animal is determined by local conditions only, so any collective behavior emerges owing to self-organization. It is shown that the pursuit of prey by predators entails predator interference, manifesting itself at the population level as the dependency of the trophic function (individual ration) on predator abundance. The stabilizing effect of predator interference on the dynamics of a predator-prey system is discussed. Inclusion of prey evasion induces apparent cooperation of predators and further alters the functional response, giving rise to a strong Allee effect, with extinction of the predator population upon dropping below critical numbers. Thus, we propose a simple mechanistic interpretation of important but still poorly understood behavioral phenomena that underlie the functioning of natural trophic systems.     

Mass attack of trees by Ips typographus induced by sex-specific pheromone: a model of attack dynamics

A model of attack dynamics on a single tree under mass attack by the spruce bark beetle Ips typographus is developed from earlier studies of pheromone production and response of the flying population to the pheromone signal. The model is explored for different numbers and sex-ratios of pioneer beetles and responding beetles. Both numbers of pioneers and responders were important for the dynamics, while the sex-ratio of pioneers was less important. A decreased proportion of males among the responding beetles was important for the result of the model. In the early stage of the attack the model predictions of both numbers and sex-ratio of beetles landing were similar to examples from naturally mass-attacked trees, although the attack proceeded more slowly than in the field. Several aspects of the attack dynamics, such as density-regulation of the number of attacks on the tree, as observed in the field, were not predicted by the model. Gaps in the knowledge of the chemical ecology of the tree-insect relation, such as qualitative change in odours from the tree, spacing mechanisms on the bark surface, and mortality due to host resistence, are pointed out with help of the model.     

What maintains noncytoplasmic incompatibility inducing Wolbachia in their hosts: a case study from a natural Drosophila yakuba population

Cytoplasmic incompatibility (CI) allows Wolbachia to invade hosts populations by specifically inducing sterility in crosses between infected males and uninfected females. In some species, non-CI inducing Wolbachia, that are thought to derive from CI-inducing ancestors, are common. In theory, the maintenance of such infections is not possible unless the bacterium is perfectly transmitted to offspring--and/or provides a fitness benefit to infected females. The present study aims to test this view by investigating a population of Drosophila yakuba from Gabon, West Africa. We did not find any evidence for CI using wild caught females. Infected females from the field transmitted the infection to 100% of their offspring. A positive effect on female fecundity was observed one generation after collecting, but this was not retrieved five generations later, using additional lines. Similarly, the presence of Wolbachia was found to affect mating behaviour, but the results of two experiments realized five generations apart were not consistent. Finally, Wolbachia was not found to affect sex ratio. Overall, our results would suggest that Wolbachia behaves like a neutral or nearly neutral trait in this species, and is maintained in the host by perfect maternal transmission.     

Effect of resource subsidies on predator-prey population dynamics: a mathematical model

The influence of a resource subsidy on predator-prey interactions is examined using a mathematical model. The model arises from the study of a biological system involving arctic foxes (predator), lemmings (prey), and seal carcasses (subsidy). In one version of the model, the predator, prey and subsidy all occur in the same location; in a second version, the predator moves between two patches, one containing only the prey and the other containing only the subsidy. Criteria for feasibility and stability of the different equilibrium states are studied both analytically and numerically. At small subsidy input rates, there is a minimum prey carrying capacity needed to support both predator and prey. At intermediate subsidy input rates, the predator and prey can always coexist. At high subsidy input rates, the prey cannot persist even at high carrying capacities. As predator movement increases, the dynamic stability of the predator-prey-subsidy interactions also increases.     

Overcoming the phage replication threshold: a mathematical model with implications for phage therapy

Prior observations of phage-host systems in vitro have led to the conclusion that susceptible host cell populations must reach a critical density before phage replication can occur. Such a replication threshold density would have broad implications for the therapeutic use of phage. In this report, we demonstrate experimentally that no such replication threshold exists and explain the previous data used to support the existence of the threshold in terms of a classical model of the kinetics of colloidal particle interactions in solution. This result leads us to conclude that the frequently used measure of multiplicity of infection (MOI), computed as the ratio of the number of phage to the number of cells, is generally inappropriate for situations in which cell concentrations are less than 10(7)/ml. In its place, we propose an alternative measure, MOI(actual), that takes into account the cell concentration and adsorption time. Properties of this function are elucidated that explain the demonstrated usefulness of MOI at high cell densities, as well as some unexpected consequences at low concentrations. In addition, the concept of MOI(actual) allows us to write simple formulas for computing practical quantities, such as the number of phage sufficient to infect 99.99% of host cells at arbitrary concentrations.     

Biomedical and therapeutic potential of exopolysaccharides by Lactobacillus paracasei isolated from sauerkraut: Screening and characterization

The intention of the study was evaluated for purification and characterization of exopolysaccharides from Lactobacillus paracasei; was isolated from homemade Sauerkraut sample collected from Sivakasi, Tamil Nadu, India, confirmed by biochemical and gene sequencing (16S rRNA). The purification and characterization of exopolysaccharides from candidate bacterium were studied on appearance, solubility of the EPS, carbohydrate estimation, emulsifying activity, sulphate, protein, uronic acid content, FTIR, HPLC and GC-MS analysis. The percentage of elemental carbon, (54.36%) hydrogen (21.74%), nitrogen (9.63%) and sulphur content (18.03%) were recorded in exopolysaccharides. The emulsification index (E24) of EPS was higher in toluene (79.20) and benzene (78.867) supplemented medium. FTIR spectrum of the candidate bacterial EPS confirmed presence of sulphate compounds, carboxyl group, and hydrogen bonded compounds etc. EPS exhibited 76.34% of Total Antioxidant Capacity (TAC), 71.15% of reducing power, 68.65% of Hydrogen Peroxide scavenging activity and also 60.31% DPPH radical scavenging activity. The potential antioxidant properties observed in exopolysaccharides from Lactobacillus paracasei is considered as valuable drugs.