Killer phenotype of indigenous yeasts isolated from Argentinian wine cellars and their potential starter cultures for winemaking

Of 31 yeasts, from different surfaces of two cellars from the northwest region of Argentina, 11 expressed killer activity against the sensitive strain Saccharomyces cerevisiae P351. Five of these killer yeasts were identified as S. cerevisiae by phenotypic tests and PCR-RFLP analysis. Two S. cerevisiae killer strains, Cf5 and Cf8, were selected based on their excellent kinetic and enological properties as potential autochthonous mixed starter cultures to be used during wine fermentation. They could dominate the natural microbiota in fermentation vats and keep the typical sensorial characteristics of the wine of this region.     

Polymer dynamics as a mechanistic model for the flow-independent viscoelasticity of cartilage

The initial, rapid, flow independent, apparent stress relaxation of articular cartilage disks deformed by unconfined compressive displacement is shown to be consistent with the theory of polymer dynamics. A relaxation function for polymers based upon a mechanistic model of molecular interaction (reptation) appropriately approximated early, flow independent relaxation of stress. It is argued that the theory of polymer dynamics, with its reliance on mechanistic models of molecular interaction, is an appropriate technique for application to and the understanding of rapid, flow independent, stress relaxation in cartilage.     

Analysing the Moran effect and dispersal: their significance and interaction in synchronous population dynamics

Population synchrony over various geographical scales is known from a large number of taxa. Three main hypotheses have been put forward as explanations to this phenomenon. First, correlated environmental disturbances (so called Moran effect). Moran showed that at least for linear models, the population synchrony would exactly match that of the corresponding environment. Second, the migration, or dispersal, of individuals is liable to cause population synchrony. Third, nomadic predators have been proposed as a synchronising mechanism. In this paper, I analyse the first two explanations by linearizing a general population model with spatial structure. From this linear approximation I derive an expression for the population synchrony. The major results are: 1) Population synchrony can vary significantly depending on the timing of the population census. 2) The environmental correlation is always important. It sets the 'base level' of synchrony. 3) Dispersal is only an effective synchronising mechanism when the local dynamics are at least close to unstable. 4) These results are valid even in a model with delayed density dependence – with possibly cyclic dynamics. Time lag structure has little effect on synchrony. Some of the predictions presented here are supported by data from the literature.     

Quantifying the dynamics of prion infection: a bifurcation analysis of Laurent's model

Laurent (1996a, Médecine/sciences12, 774-785; 1996b, Biochem. J.318, 35-39; 1998, Bio-phys. Chem.72, 211-222) proposed a model for the dynamics of diseases of the central nervous system caused by prions. It is based on the protein-only hypothesis (Prusiner et al., 1981, Proc. Natl. Acad. Sci. U.S.A.78, 6675-6679), which assumes that infection can be spread by particular proteins (prions) that can exist in two forms that share the same sequence, but have a different structure. The normal form is harmless, while the infectious isoform of the prion protein catalyses a transconformation from the native isoform to itself within a specialized compartment of the brain cells. This paper systematically explores the model behavior with the aim of quantifying the fundamental parameters characterizing the dynamics of prion infection. To this end we use data from the literature to fix orders of magnitude for the rates of synthesis and degradation of the native form of prion protein and for the shape of the autocatalytic function. The dynamical behavior is classified with respect to two unknown parameters (bifurcation analysis): the rate of spontaneous transconformation and the rate of output of the infectious isoform from the specialized compartment. We thus find that the bistability properties evidenced by Laurent are confined to a certain range of parameters and that permanent oscillations of the two isoforms concentrations are possible. The bifurcation analysis allows us to estimate approximate ranges for the values of the two unknown parameters and consequently to derive incubation times and compare them with actual data for hamster. Also, our study predicts that the output rate of the infectious isoform is relatively insensitive to variations of model parameters.     

An apparatus for the isolated propagation of foliar pathogens and their hosts

Epidemiological studies, especially of obligate pathogens, often require healthy test plants and the incubation of infections in isolation. Ventilation of glasshouses with spore-free air is helpful but costly, and provides only a few discrete environments. The apparatus described is cheap and simple and enables many separate covered plant pots to be supplied with filtered air. It was designed to help measure the incubation time and frequency of viable conidia of Erysiphe graminis, but may also be useful for studying other pathogens and, with some modification, for plant breeding or quarantine.     

Application and evaluation of the phage resistance- and bacteriocin-encoding plasmid pMRC01 for the improvement of dairy starter cultures.

The conjugative 63-kb lactococcal plasmid pMRC01 encodes bacteriophage resistance and production of and immunity to a novel broad-spectrum bacteriocin, designated lacticin 3147 (M.P. Ryan, M.C. Rea, C. Hill, and R.P. Ross, Appl. Environ. Microbiol. 62:612-619, 1996). The phage resistance is an abortive infection mechanism which targets the phage-lytic cycle at a point after phage DNA replication. By using the genetic determinants for bacteriocin immunity encoded on the plasmid as a selectable marker, pMRC01 was transferred into a variety of lactococcal starter cultures to improve their phage resistance properties. Selection of resulting transconjugants was performed directly on solid media containing the bacteriocin. Since the starters exhibited no spontaneous resistance to the bacteriocin as a selective agent, this allowed the assessment of the transfer of the naturally occurring plasmid into a range of dairy starter cultures. Results demonstrate that efficient transfer of the plasmid was dependent on the particular recipient strain chosen, and while high-frequency transfer (10(-3) per donor) of the entire plasmid to some strains was observed, the plasmid could not be conjugated into a number of starters. In this study, transconjugants for a number of lactococcal starter cultures which are phage resistant and bacteriocin producing have been generated. This bacteriocin-producing phenotype allows for control of nonstarter flora in food fermentations, and the phage resistance property protects the starter cultures in industry. The 63-kb plasmid was also successfully transferred into Lactococcus lactis MG1614 cells via electroporation.     

A model for aggregation-dispersion dynamics of a population

An important feature that distinguishes the movement of living systems from the random motion of inorganic material is a delicate balance between spreading and concentrating. This movement is based on the kind of interactions which a bacterial colony may establish during migration. Namely, the antagonistic effects of dispersal which take place preferentially down the population gradient and the tendency in grouping together. In this work a model is proposed which considers these effects. The phase plane analysis and the numerical calculations reveal the existence of stable sharp wave front solutions. The speed of the wave front is modulated by the compromise between the tendencies of spreading and aggregating. The results obtained were compared with experimental observations in cultures of Escherichia coli and Streptococcus faecalis. The agreement between both types of results supports the hypothesis on which the model was based.     

Carriers for starter cultures for the production of garri,a fermented food derived from cassava

Garri is a popular food in Nigeria derived from the fermentation of the mash obtained from the enlarged root of the cassava plant, Manihot esculenta Crantz. As currently produced, the mash used for garri production is spontaneously fermented; on account of this, there is great variability in the organoleptic properties and the quantities of residual cyanide in the garri from Nigeria. The use of starter cultures can help ensure uniformity in these properties if dry carriers can be found on which the fermentative organisms can survive for extended periods so as to facilitate the transportation of their carriers to the many small and scattered garri producers. We therefore studied the survival, singly or mixed, on dry starchy substrates derived from locally available crops, of Lactobacillus coryneformis, Lact. delbruckii, and Saccharomyces sp., which are associated with garri production, as carriers for these organisms. After 16 weeks of storage, between 75% and 85% of the organisms survived on yam, coco-yam, cassava in that order, whereas between 40 and 65% survived on rice and garri. Refrigeration at 4 °C did not improve the survival of the organisms, when compared to room temperature (30 °C) for the organisms stores on yam, coco-yam, and cassava. However where the organisms were stored on rice and garri, refrigeration improved the survivability of the organisms by between 10 and 20%.     

Molecular characterization of Lactobacillus curvatus and Lact. sake isolated from sauerkraut and their application in sausage fermentations

Lactobacillus curvatus and Lact. sake are best adapted to meat fermentations and dominate the flora during the whole process. In fermenting sauerkraut, Leuconostoc mesenteroides subsp. mesenteroides is the major organism only during the early phase. In this environment Lact. curvatus and Lact. sake provide up to 50% of the microbial flora especially of the later phase, depending on the process conditions. Strains of Lact. curvatus and Lact. sake isolated from fermenting sauerkraut were identified by hybridization with species specific 23S rRNA-targeted oligonucleotide probes and further characterized. In 59 of 72 strains, plasmid DNA was detected. Small cryptic plasmids of 20 strains were found to be homologous with pLc2, a 2·6 kb plasmid from Lact. curvatus LTH683, which was originally isolated from meat. The ability to compete was investigated in fermenting sausages of two strains each of Lact. curvatus and Lact. sake isolated from sauerkraut. One strain each of Lact. curvatus and Lact sake was found to outnumber the meat-borne flora and govern the process.     

A mechanistic model for interference and Allee effect in the predator population

We present the results of simulations in an individual-based model describing spatial movement and predator-prey interaction within a closed rectangular habitat. Movement of each individual animal is determined by local conditions only, so any collective behavior emerges owing to self-organization. It is shown that the pursuit of prey by predators entails predator interference, manifesting itself at the population level as the dependency of the trophic function (individual ration) on predator abundance. The stabilizing effect of predator interference on the dynamics of a predator-prey system is discussed. Inclusion of prey evasion induces apparent cooperation of predators and further alters the functional response, giving rise to a strong Allee effect, with extinction of the predator population upon dropping below critical numbers. Thus, we propose a simple mechanistic interpretation of important but still poorly understood behavioral phenomena that underlie the functioning of natural trophic systems.     

Mass attack of trees by Ips typographus induced by sex-specific pheromone: a model of attack dynamics

A model of attack dynamics on a single tree under mass attack by the spruce bark beetle Ips typographus is developed from earlier studies of pheromone production and response of the flying population to the pheromone signal. The model is explored for different numbers and sex-ratios of pioneer beetles and responding beetles. Both numbers of pioneers and responders were important for the dynamics, while the sex-ratio of pioneers was less important. A decreased proportion of males among the responding beetles was important for the result of the model. In the early stage of the attack the model predictions of both numbers and sex-ratio of beetles landing were similar to examples from naturally mass-attacked trees, although the attack proceeded more slowly than in the field. Several aspects of the attack dynamics, such as density-regulation of the number of attacks on the tree, as observed in the field, were not predicted by the model. Gaps in the knowledge of the chemical ecology of the tree-insect relation, such as qualitative change in odours from the tree, spacing mechanisms on the bark surface, and mortality due to host resistence, are pointed out with help of the model.     

What maintains noncytoplasmic incompatibility inducing Wolbachia in their hosts: a case study from a natural Drosophila yakuba population

Cytoplasmic incompatibility (CI) allows Wolbachia to invade hosts populations by specifically inducing sterility in crosses between infected males and uninfected females. In some species, non-CI inducing Wolbachia, that are thought to derive from CI-inducing ancestors, are common. In theory, the maintenance of such infections is not possible unless the bacterium is perfectly transmitted to offspring--and/or provides a fitness benefit to infected females. The present study aims to test this view by investigating a population of Drosophila yakuba from Gabon, West Africa. We did not find any evidence for CI using wild caught females. Infected females from the field transmitted the infection to 100% of their offspring. A positive effect on female fecundity was observed one generation after collecting, but this was not retrieved five generations later, using additional lines. Similarly, the presence of Wolbachia was found to affect mating behaviour, but the results of two experiments realized five generations apart were not consistent. Finally, Wolbachia was not found to affect sex ratio. Overall, our results would suggest that Wolbachia behaves like a neutral or nearly neutral trait in this species, and is maintained in the host by perfect maternal transmission.     

Effect of resource subsidies on predator-prey population dynamics: a mathematical model

The influence of a resource subsidy on predator-prey interactions is examined using a mathematical model. The model arises from the study of a biological system involving arctic foxes (predator), lemmings (prey), and seal carcasses (subsidy). In one version of the model, the predator, prey and subsidy all occur in the same location; in a second version, the predator moves between two patches, one containing only the prey and the other containing only the subsidy. Criteria for feasibility and stability of the different equilibrium states are studied both analytically and numerically. At small subsidy input rates, there is a minimum prey carrying capacity needed to support both predator and prey. At intermediate subsidy input rates, the predator and prey can always coexist. At high subsidy input rates, the prey cannot persist even at high carrying capacities. As predator movement increases, the dynamic stability of the predator-prey-subsidy interactions also increases.     

Prospecting and dispersal: their eco-evolutionary dynamics and implications for population patterns

Dispersal is not a blind process, and evidence is accumulating that individual dispersal strategies are informed in most, if not all, organisms. The acquisition and use of information are traits that may evolve across space and time as a function of the balance between costs and benefits of informed dispersal. If information is available, individuals can potentially use it in making better decisions, thereby increasing their fitness. However, prospecting for and using information probably entail costs that may constrain the evolution of informed dispersal, potentially with population-level consequences. By using individual-based, spatially explicit simulations, we detected clear coevolutionary dynamics between prospecting and dispersal movement strategies that differed in sign and magnitude depending on their respective costs. More specifically, we found that informed dispersal strategies evolve when the costs of information acquisition during prospecting are low but only if there are mortality costs associated with dispersal movements. That is, selection favours informed dispersal strategies when the acquisition and use processes themselves were not too expensive. When non-informed dispersal strategies evolve, they do so jointly with the evolution of long dispersal distance because this maximizes the sampling area. In some cases, selection produces dispersal rules different from those that would be ‘optimal’ (i.e. the best possible population performance—in our context quantitatively measured as population density and patch occupancy—among all possible individual movement rules) for the population. That is, on the one hand, informed dispersal strategies led to population performance below its highest possible level. On the other hand, un- and poorly informed individuals nearly optimized population performance, both in terms of density and patch occupancy.     

A fully coupled, mechanistic model for infectious disease dynamics in a metapopulation: movement and epidemic duration

The drive to understand the invasion, spread and fade out of infectious disease in structured populations has produced a variety of mathematical models for pathogen dynamics in metapopulations. Very rarely are these models fully coupled, by which we mean that the spread of an infection within a subpopulation affects the transmission between subpopulations and vice versa. It is also rare that these models are accessible to biologists, in the sense that all parameters have a clear biological meaning and the biological assumptions are explained. Here we present an accessible model that is fully coupled without being an individual-based model. We use the model to show that the duration of an epidemic has a highly non-linear relationship with the movement rate between subpopulations, with a peak in epidemic duration appearing at small movement rates and a global maximum at large movement rates. Intuitively, the first peak is due to asynchrony in the dynamics of infection between subpopulations; we confirm this intuition and also show the peak coincides with successful invasion of the infection into most subpopulations. The global maximum at relatively large movement rates occurs because then the infectious agent perceives the metapopulation as if it is a single well-mixed population wherein the effective population size is greater than the critical community size.     

Novel paired starter culture system for sauerkraut, consisting of a nisin-resistant Leuconostoc mesenteroides strain and a nisin-producing Lactococcus lactis strain.

Nisin-resistant Leuconostoc mesenteroides NCK293 and nisin-producing Lactococcus lactis subsp. lactis NCK401 were evaluated separately and in combination for growth and nisin production in a model sauerkraut fermentation. Strains were genetically marked and selectively enumerated by using antibiotic-containing media. The growth and survival of L. mesenteroides were similar in the presence and absence of Lactococcus lactis subsp. lactis. The growth of Lactococcus lactis subsp. lactis was not inhibited, although the maximum cell density was reduced and the population decline was more pronounced in the presence of L. mesenteroides. Nisin was detected within 24 h, and levels were relatively constant over the 12-day test period. The maximum cell populations and nisin level achieved could be altered by changing the initial cell ratios of L. mesenteroides and lactococcus lactis subsp. lactis. Isogenic nisin-producing and nisin-negative Lactococcus lactis subsp. lactis derivatives were used in combination with nisin-resistant L. mesenteroides to demonstrate that nisin levels produced in mixed culture were sufficient to retard the onset of the growth of nisin-sensitive, homofermentative Lactobacillus plantarum ATCC 14917.     

Spread and variability of the integrase gene in Lactobacillus delbrueckii ssp. lactis strains and phages isolated from whey starter cultures

AIMS: To determine the presence, diffusion and variability of the integrase (int) gene in Lactobacillus delbrueckii ssp. lactis isolated from natural whey starters used for the production of Italian hard cheeses. METHODS AND RESULTS: A PCR-based protocol aimed to amplify an internal fragment of the int gene was optimized taking into account phage genome sequences available from public databases. Thirty-seven of the 39 strains tested showed the presence of the putative int gene. Southern blot hybridization experiments confirmed data obtained by PCR. The presence of the putative int gene was observed also in 20 of 23 Lact. delbrueckii ssp. lactis lytic phages isolated from the same starter cultures used to isolate strains. Phylogenetic analysis of partial int gene revealed a high similarity both within and between strain- and phage-derived sequences. Sixty per cent of the int-positive strains resulted inducible with mitomycin C, and two of them released active phage particles. CONCLUSIONS: Our preliminary findings seem to suggest that an important number of Lact. delbrueckii ssp. lactis strains associated with the whey starters are lysogenic. SIGNIFICANCE AND IMPACT OF THE STUDY: Further contribution to obtain a clearer picture of the complex relationship between thermophilic lactic acid bacteria phage and host in whey starters for Italian, hard-cooked cheeses.