Validity of <Emphasis Type="Italic">Scolecenchelys aoki</Emphasis>, with a redescription of <Emphasis Type="Italic">Scolecenchelys gymnota</Emphasis> (Anguilliformes: Ophichthidae)

The myrophine ophichthid fishes (worm eels) Muraenichthys aoki Jordan and Snyder 1901 and Muraenichthys gymnotus Bleeker 1857 are redescribed as valid species of Scolecenchelys based on the types and non-type specimens collected from the Indo-Pacific. Because both species are similar to each other in having acute snouts, the posterior margin of the eye before the rictus, and their dorsal-fin origins located slightly posterior to a vertical line through the anus, Scolecenchelys aoki has usually been regarded as a junior synonym of Scolecenchelys gymnota. However, S. aoki is clearly distinguishable from S. gymnota by having a median groove on the ventral side of snout (absent in S. gymnota), uniserial maxillary teeth in smaller specimens (<200 mm TL; vs. biserial), three infraorbital sensory pores at postorbital area (vs. two), and more numerous vertebrae (56–65 in predorsal vs. 51–57; 53–58 in preanal vs. 47–52). Scolecenchelys aoki is restricted to Japanese waters and regarded as a senior synonym of Muraenichthys borealis Machida and Shiogaki 1990. Scolecenchelys gymnota is widely distributed in the Indo-Pacific, from South Africa and the Red Sea to Samoa, north to Okinawa, Japan. Sphagebranchus huysmani Weber 1913 and Muraenichthys fowleri Schultz 1943 are synonymized under S. gymnota.     

Redescriptions of the Indo-Pacific atherinid fishes <Emphasis Type="Italic">Atherinomorus forskalii</Emphasis>, <Emphasis Type="Italic">Atherinomorus lacunosus</Emphasis>, and <Emphasis Type="Italic">Atherinomorus pinguis</Emphasis>

The Indo-Pacific marine atherinid fishes Atherinomorus forskalii (Rüppell, 1838), Atherinomorus lacunosus (Forster, 1801), and Atherinomorus pinguis (Lacepède, 1803) are redescribed as valid species based on the types and non-type specimens collected throughout the Indo-Pacific. They are similar to each other chiefly in having a wide midlateral band (almost the same or greater than the midlateral scale width), large mouth (posterior tip of upper jaw reaching to or beyond a vertical through anterior margin of pupil), and no distinct tubercle at the posterior end of the dentary. All three species are distinguishable from congeners by those characters. The three species have long been confused with each other or synonymized erroneously as a single species. Atherinomorus forskalii, known from the Red Sea and eastern Mediterranean, differs from Atherinomorus lacunosus and Atherinomorus pinguis in having conspicuous, large endopterygoid teeth, forming obvious tooth ridges. Atherinomorus lacunosus, widely distributed in almost the entire Indo-Pacific, from East Africa to Tonga, north to southern Japan, and south to northern Australia, differs from Atherinomorus pinguis in having a wider midlateral band (the lower margin reaching to almost the center of the fourth scale row at level of the anal fin origin vs. the lower margin reaching to the ventral end of the third scale row in Atherinomorus pinguis) and more numerous midlateral scales (40–44 vs. 38–41 in Atherinomorus pinguis). Atherina morrisi Jordan and Starks, 1906, Hepsetia pinguis mineri Nichols and Roemhild, 1951, Pranesus capricornensis Woodland, 1961, Pranesus maculatus Taylor, 1964, and Pranesus pinguis ruppelli Smith, 1965, are regarded as junior synonyms of Atherinomorus lacunosus. Atherinomorus pinguis is also widely distributed in the Indo-West Pacific, from East Africa to northern Australia and north to southern Japan. Atherina pectoralis Valenciennes, 1835, is considered a junior synonym of Atherinomorus pinguis. Supplementary material to this paper is available in electronic format at     

<Emphasis Type="Italic">Doederleinia gracilispinis</Emphasis> (Fowler, 1943), a junior synonym of <Emphasis Type="Italic">Doederleinia berycoides</Emphasis> (Hilgendorf, 1879), with review of the genus

A poorly known acropomatid, Rhomboserranus gracilispinis Fowler, 1943, was originally described on the basis of specimens from the Philippines. Since the recognition of Rhomboserranus as a junior synonym of Doederleinia, R. gracilispinis had been considered a valid species of Doederleinia. Examination of the holotype of R. gracilispinis and other type series of nominal species of Doederleinia showed them to be included in the single species D. berycoides (Hilgendorf, 1879). The sole representative of Doederleinia is distributed from Japan to northwestern Australia. This species is distinguishable from other acropomatids by the following combination of characters: head and body red; nine dorsal-fin spines; three anal-fin spines; no luminous organ; a row of conical teeth with a large canine tooth medially on lower jaw; large conical teeth on anterior part of outer margin with two or three large canine teeth on inner margin on upper jaw; and anus situated just anterior to origin of anal fin.     

<Emphasis Type="Italic">Democricetodon</Emphasis> and <Emphasis Type="Italic">Megacricetodon</Emphasis> (Mammalia,Cricetidae) from the Miocene of Sandelzhausen,Southern Germany

The cricetid species Democricetodon gracilis (Fahlbusch, 1964), Democricetodon mutilus (Fahlbusch, 1964), Megacricetodon bavaricus (Fahlbusch, 1964), and Megacricetodon minor (Lartet, 1851) from Sandelzhausen (Early/Middle Miocene boundary, MN5, Southern Germany) are represented by more than 2,000 molars providing substantial data on the variability in sizes and on variation in morphologies. Temporal and spatial distributions of these species indicate that they are probably immigrants in SE Germany, originating from south-eastern or more southern areas. Except for M. minor, whose origin is not clear and could be regarded as an immigrant from more eastern areas. Using the length of the mesoloph in the second upper molars as an indicator of habitat, D. gracilis and M. minor had a preference for a humid habitat, D. mutilus and M. bavaricus a preference for drier habitats.      

Validity of <Emphasis Type="Italic">Scorpaena jacksoniensis</Emphasis> and a redescription of <Emphasis Type="Italic">S. cardinalis</Emphasis>, a senior synonym of <Emphasis Type="Italic">S. cookii</Emphasis> (Scorpaeniformes: Scorpaenidae)

The Scorpaena cardinalis complex, including S. cardinalis, S. jacksoniensis and S. orgila, is defined. The genus Ruboralga (type species: S. jacksoniensis) is regarded as a junior synonym of Scorpaena. Scorpaena jacksoniensis Steindachner 1866, previously treated as a junior synonym of Scorpaena cardinalis Solander and Richardson 1842, is regarded here as a valid species. Scorpaena cookii Günther 1874, previously treated as a valid species, is regarded here as a junior synonym of S. cardinalis. Thus, recent recognition of the two Australasian scorpionfishes, i.e., S. cardinalis and S. cookii, are re-identified in this study as S. jacksoniensis and S. cardinalis, respectively. Scorpaena plebeia Solander 1842 is regarded as a junior synonym of S. cardinalis. Scorpaena jacksoniensis is distributed along the east coast of Australia from southern Queensland to eastern Victoria, whereas S. cardinalis occurs around northern New Zealand, the Kermadec Islands and offshore islands of the Tasman Sea. A neotype is designated for S. cardinalis. Morphological changes with growth in the two species are described in detail.     

A new species of <Emphasis Type="Italic">Penopus</Emphasis> (Teleostei: Ophidiidae) from the Ryukyu Trench,the West Pacific,with remarks on <Emphasis Type="Italic">Penopus microphthalmus</Emphasis>

The bathyal genus Penopus (Ophidiidae) is revised based on 23 specimens. One specimen from the Ryukyu Trench represents a new species, Penopus japonicus. The remaining 22 specimens were found on both sides of the Atlantic Ocean, and neither 28 meristic and morphometric characters nor several morphological characters show any differences between the two populations. This supports Séret (1988), who considered Penopus macdonaldi Goode and Bean 1896 a junior synonym of Penopus microphthalmus (Vaillant 1888). The new Japanese species can be separated from the Atlantic species by having fewer rays in the dorsal (117 vs. 135–158) and anal (89 vs. 106–122) fins, the squamation of the head restricted to the middle part of the preopercle versus the squamation covering the dorsum, preopercle and the opercle in part, a distinct spine behind the posterior nostril versus the spine hardly visible and 9 spines on the hind margin of the preopercle versus 4–7 spines.     

<Emphasis Type="Italic">Neolebouria blatta</Emphasis> n. sp. (Digenea: Opecoelidae) from <Emphasis Type="Italic">Pristipomoides argyrogrammicus</Emphasis> (Valenciennes) and <Emphasis Type="Italic">Etelis carbunculus</Emphasis> Cuvier (Perciformes: Lutjanidae) off New Caledonia

Neolebouria blatta n. sp. is described from Pristipomoides argyrogrammicus (Valenciennes) and Etelis carbunculus Cuvier in waters off New Caledonia. It differs from all other species of Neolebouria Gibson, 1976 but one, N. georgenascimentoi Bray, 2002, in the extension of the cirrus-sac to the ovary or nearly so. It differs from N. georgenascimentoi in its continuous, rather than interrupted, vitelline distribution. N. blatta belongs to a small group of similar Neolebouria species reported in deep-water lutjanids, which includes N. longisacculus (Yamaguti, 1970) n. comb., N. rooseveltiae (Yamaguti, 1970) n. comb. and N. ulaula (Yamaguti, 1970).     

Surface ultrastructure of the elasmobranchia parasitizing <Emphasis Type="Italic">Grillotiella exilis</Emphasis> and <Emphasis Type="Italic">Pseudonybelinia odontacantha</Emphasis> (Trypanorhyncha,Cestoda)

The surface ultrastructure of two monotypic trypanorhynch genera is described based on new material of Grillotiella exilis (Linton, 1909) and type material of Pseudonybelinia odontacantha Dollfus 1966. In G. exilis, spiniform microtriches cover the bothrial surfaces and the anterior part of the pars vaginalis posterior to the bothria. Bifurcate microtriches adorn the bothrial margins, filiform microtriches the scolex peduncle, and capilliform microtriches the posterior scolex end. This microthrix pattern resembles that found in, e.g., Grillotia erinaceus (van Beneden, 1858), with the difference that the anterior part of the pars vaginalis is covered with a collar of multidigitate palmate microtriches. The position of Grillotiella within the Grillotiinae, Lacistorhynchidae is supported based on these data. The bothria and scolex peduncle of P. odontacantha are covered with acerosate and unciniform microtriches on the distal bothrial surface and capilliform microtriches on the scolex peduncle. Short filiform microtriches cover the appendix. The microthrix pattern resembles that of the Tentaculariidae but with unciniform and acerosate microtriches densely covering the entire distal bothrial surface. Tegumental grooves are present on the posterior bothrial margin. They can be distinguished from bothrial pits in otobothrioid trypanorhynchs in having similar unciniform microtriches compared to the other parts of the bothrial surface and in lacking any spiniform microtriches. With the absence of bothrial pits as characteristic for the otobothrioids and its characteristic microthrix pattern, P. odontacantha together with Paranybelinia otobothrioides Dollfus 1966, both belonging to the Paranybeliniidae change their position in the most recent system from the Otobothrioidea into the Tentacularioidea.     

<Emphasis Type="Italic">Euleiognathus,</Emphasis> a new genus proposed for the Miocene ponyfish, <Emphasis Type="Italic">Leiognathus tottori</Emphasis> Yabumoto and Uyeno 1994 (Perciformes: Leiognathidae) from Japan

A new leiognathid genus Euleiognathus is proposed for Leiognathus tottori Yabumoto and Uyeno 1994, described from the Middle Miocene Iwami Formation of the Tottori Group, Tottori Prefecture, Japan. Euleiognathus differs from other genera of the family Leiognathidae in having serrations on the anterior edges of the second to fourth spines of the dorsal fin and relatively large uniserial conical teeth of the premaxilla.     

Morphological Variation in Populations of <Emphasis Type="Italic">Eulemur albocollaris</Emphasis> and <Emphasis Type="Italic">E. fulvus rufus</Emphasis>

Sexual dimorphism in body size and canine weaponry is commonly associated with high levels of male-male competition. When group living species do not rely heavily on male-male competition for access to females, sperm competition may represent a viable alternative strategy. Unlike most haplorhine primates, lemurs are typically monomorphic in body weight and canine height. We assessed variability of body mass dimorphism and canine size dimorphism in brown lemurs using morphometric data from 3 populations in southeastern Madagascar: Eulemur fulvus rufus, E. albocollaris, and hybrids of the species. We found significant male-biased canine dimorphism in E. albocollaris in conjunction with body-size monomorphism. We observed similar patterns in the hybrids, but E. fulvus rufus exhibited significant female-biased size dimorphism and canine monomorphism. Testes volume was relatively high across study populations. Thus, sperm competition appears to be strong in brown lemurs. E. albocollaris males combine sperm competition with large canines, but not higher body mass, indicating a difference in sexual strategy from most lemurs. Patterns of body mass and canine size dimorphism are not uniform across brown lemur populations, indicating that future work on these populations can explicitly test models that predict relationships between size dimorphism and various types of competition.     

Synonymy of two species of the genus <Emphasis Type="Italic">Platycephalus</Emphasis> and validity of <Emphasis Type="Italic">Platycephalus westraliae</Emphasis> (Teleostei: Platycephalidae)

The type specimens of platycephalid Platycephalus endrachtensis Quoy and Gaimard 1825 are regarded as being conspecific with Platycephalus arenarius Ramsay and Ogilby 1886, so the latter becomes a junior synonym. This species is characterized as having a caudal fin with four or more longitudinal dark bands and lacking a yellow blotch. It is also found that Platycephalus westraliae (Whitley 1938), which had been considered to be a junior synonym of Platycephalus bassensis Cuvier 1829, is a valid species. Specimens that recently had been mistakenly identified as “P. endrachtensis,” having the caudal fin with three or four longitudinal dark bands and a yellow blotch on the upper lobe, should be referred to P. westraliae.     

RAPD and microsatellite transferability studies in selected species of <Emphasis Type="Italic">Prosopis</Emphasis> (section Algarobia) with emphasis on <Emphasis Type="Italic">Prosopis juliflora</Emphasis> and <Emphasis Type="Italic">P. pallida</Emphasis>

The genus Prosopis (Leguminosae, Mimosoideae), comprises 44 species widely distributed in arid and semi-arid zones. Prosopis pallida (Humb. & Bonpl. ex Willd.) Kunth and P. juliflora (Sw.) DC. are the two species that are truly tropical apart from P. africana, which is native to tropical Africa (Pasiecznik et al. 2004), and they have been introduced widely beyond their native ranges. However, taxonomic confusion within the genus has hampered exploitation and better management of the species. The present study focusses primarily on evaluating the genetic relationship between Prosopis species from the section Algarobia, containing most species of economic importance, though P. tamarugo from section Strombocarpa is also included for comparison. In total, 12 Prosopis species and a putative P. pallida × P. chilensis hybrid were assessed for their genetic relationships based on RAPD markers and microsatellite transferability. The results show that P. pallida and P. juliflora are not closely related despite some morphological similarity. Evidence also agrees with previous studies which suggest that the grouping of series in section Algarobia is artificial.     

Loss of <Emphasis Type="Italic">Tc-arrow</Emphasis> and canonical Wnt signaling alters posterior morphology and pair-rule gene expression in the short-germ insect, <Emphasis Type="Italic">Tribolium castaneum</Emphasis>

Wnt signaling has been implicated in posterior patterning in short-germ insects, including the red flour beetle Tribolium castaneum (Bolognesi et al. Curr Biol 18:1624–1629, 2008b; Angelini and Kaufman Dev Biol 283:409–423, 2005; Miyawaki et al. Mech Dev 121:119–130, 2004). Specifically, depletion of Wnt ligands Tc-Wnt1 and Tc-WntD/8 produces Tribolium embryos lacking abdominal segments. Similar phenotypes are produced by depletion of Tc-porcupine (Tc-porc) or Tc-pangolin (Tc-pan), indicating that the signal is transmitted through the canonical Wnt pathway (Bolognesi et al. Curr Biol 18:1624–1629, 2008b). Here we show that RNAi for the receptor Tc-arrow produced similar truncated phenotypes, providing additional evidence supporting canonical signal transduction. Furthermore, since in Tribolium segments are defined sequentially by a pair-rule gene circuit that, when interrupted, produces truncated phenotypes (Choe et al. Proc Natl Acad Sci U S A 103:6560–6564, 2006), we investigated the relationship between loss of Wnt signaling and this pair-rule gene circuit. After depletion of the receptor Tc-arrow, expression of Tc-Wnt1 was noticeably absent from the growth zone, while Tc-WntD/8 was restricted to a single spot of expression in what remained of the posterior growth zone. The primary pair-rule genes Tc-runt (Tc-run) and Tc-even-skipped (Tc-eve) were expressed normally in the anterior segments, but were reduced to a single spot in the remnants of the posterior growth zone. Thus, expression of pair-rule genes and Tc-WntD/8 are similarly affected by depletion of Wnt signal and disruption of the posterior growth zone.     

Expression of the <Emphasis Type="Italic">HEV2.1</Emphasis> gene promoter in transgenic <Emphasis Type="Italic">Hevea brasiliensis</Emphasis>

In this article we describe the identification of endophytic bacteria belonging to three groups isolated from shoot tip cultures of banana cv. Grand Naine in a recent study (Thomas et al. 2008) based on partial 16S rRNA gene sequence homology analysis. The first group included banana stocks that displayed obvious colony growth on MS based tissue culture medium during the first in vitro passage. The second group constituted stocks that were tissue index-negative for cultivable bacteria initially but turned index-positive after a few to several (4–8) in vitro passages while the third group formed one sub-stock that turned index-positive after about 18 passages. The organisms belonged to about 20 different genera comprising of α, β, γ-proteobacteria, Gram-positive firmicutes and actinobacteria. Visibly expressing easily cultured organisms during the first in vitro passage included Enterobacter, Klebsiella, Ochrobactrum, Pantoea, Staphylococcus and Bacillus spp. Organisms of second group that were not detected or non-culturable originally constituted Brevundimonas, Methylobacterium, Alcaligenes, Ralstonia, Pseudomonas, Corynebacterium, Microbacterium, Staphylococcus, Oceanobacillus and Bacillus spp. while the third group that turned cultivable after extended in vitro culturing included mostly non-filamentous actinobacteria (Brachybacterium, Brevibacterium, Kocuria and Tetrasphaera spp.). The identification results suggested that the endophytes of second and third groups were not strictly obligate or fastidious microbes but those surviving in viable but-non-culturable (VBNC) state and displaying gradual activation to cultivable form during continuous tissue culturing. Several of the organisms isolated are known as beneficial ones in agriculture while some organisms have possible implications in human health. The use of tissue cultures for isolating uncommon endophytes is discussed. Supply of live bacterial cultures or genetic material for research purpose is subject to their revival from glycerol stocks (as some of the organisms showed poor tolerance) and the requestor obtaining written permission from the Director General, Indian Council of Agricultural Research, New Delhi-110001.     

Gene transfer into <Emphasis Type="Italic">Solanum tuberosum</Emphasis> via <Emphasis Type="Italic">Rhizobium</Emphasis> spp.

Agrobacterium tumefaciens-mediated transformation (ATMT) is the preferred technique for gene transfer into crops. A major disadvantage of the technology remains the complexity of the patent landscape that surrounds ATMT which restricts its use for commercial applications. An alternative system has been described (Broothaerts et al. in Nature 433:629-633, 2005) detailing the propensity of three rhizobia to transform the model crop Arabidopsis thaliana, the non-food crop Nicotiana tabacum and, at a very low frequency, the monocotyledonous crop Oryza sativa. In this report we describe for the first time the genetic transformation of Solanum tuberosum using the non-Agrobacterium species Sinorhizobium meliloti, Rhizobium sp. NGR234 and Mesorhizobium loti. This was achieved by combining an optimal bacterium and host co-cultivation period with a low antibiotic regime during the callus and shoot induction stages. Using this optimized protocol the transformation frequency (calculated as % of shoots equipped with root systems with the ability to grow in rooting media supplemented with 25 μg/ml hygromycin) of the rhizobia strains was calculated at 4.72, 5.85 and 1.86% for S. meliloti, R. sp. NGR234 and M. loti respectively, compared to 47.6% for the A. tumefaciens control. Stable transgene integration and expression was confirmed via southern hybridisation, quantitative PCR analysis and histochemical screening of both leaf and/or tuber tissue. In light of the rapid advances in potato genomics, combined with the sequencing of the potato genome, the ability of alternative bacteria species to genetically transform this major food crop will provide a novel resource to the Solanaceae community as it continues to develop potato as both a food and non-food crop.     

Phylogenetic relationships of <Emphasis Type="Italic">Citrus</Emphasis> and its relatives based on <Emphasis Type="Italic">rbcL</Emphasis> gene sequences

We sequenced the rbcL genes of 64 accessions from 24 genera of Citrus relatives and analyzed them by neighbor-joining and maximum parsimony methods. Both trees supported Swingle and Reece’s (1967) treatment of the subfamily Aurantioideae as monophyletic. However, the trees did not support Swingle and Reece’s treatment of tribes and subtribes. The subgenera Citrus and Papeda were not clustered clearly. The analysis associated the Fortunella group with mandarin, Poncirus with Citrus ichangensis, Severinia buxifolia with Atalantia ceylanica, Microcitrus with Eremocitrus and Citrus micrantha, and Hesperethusa crenulata with Citropsis. Furthermore, Atalantia species showed polytomy. The classification of Swingle and Reece should be reviewed.     

Review of seven-spined <Emphasis Type="Italic">Polynemus</Emphasis> species (Perciformes: Polynemidae) with designation of a neotype for <Emphasis Type="Italic">Polynemus paradiseus</Emphasis> Linnaeus, 1758

 A taxonomic review of seven-spined Polynemus species recognizes two species as valid: P. hornadayi Myers, 1936, currently known only from western Sarawak, Kalimantan, Malaysia, and P. paradiseus Linnaeus, 1758, distributed from India to Thailand and regarded as a senior synonym of P. aureus Hamilton, 1822, P. longifilis Cuvier in Cuvier and Valenciennes, 1829, P. risua Hamilton, 1822, and P. toposui Hamilton, 1822. Polynemus hornadayi differs from P. paradiseus in having a strongly protruded occipital profile (vs. nearly straight in the latter), lower counts of anal fin soft rays (mode 11 vs. 12) and gill rakers (26 vs. 32 or 33), higher counts of pectoral fin rays (18 vs. 17), scales above and below the lateral line (11 and 18 vs. 7 and 11, respectively), and pored lateral line scales (94 vs. 70), the fifth pectoral filament longest (vs. sixth), the fourth pectoral filament longer (extending well beyond the posterior central margin of the caudal fin vs. not reaching posterior central margin), a longer pectoral fin ray (posterior tip of pectoral fin reaching to midpoint of anal fin base vs. not reaching), a deeper maxilla posterior margin (mean 5% of SL vs. 4% of SL), and a well-developed swimbladder (vs. absent).     

Correcting Misperceptions about the History of <Emphasis Type="Italic">Castanea</Emphasis> Stands in <Emphasis Type="Italic">Satoyama</Emphasis> in Japan

Correcting Misperceptions about the History of Castanea Stands in Satoyama in Japan. Mistaken ideas about the naturalness of past and present landscapes are widespread in diverse cultures and in the scientific literature, and many of these ideas are only now being seriously challenged by current research (e.g., Erickson 2006; Fairhead and Leach 1996; Hall 1998; Ramankutty and Foley 1999; Willis et al. 2004). For example, the chestnut, Castanea crenata, has long been an important tree in Japanese culture, which has been cultivated, among other things, for its much loved edible nut and its valuable timber. Today, the widely-held view in Japan, which also appears in the scholarly and popular literature, is that in the past Castanea stands covered a large area throughout Japan, and these stands only disappeared because of economic development, especially in association with railway construction. Otaru, Hokkaido, is one of the places where people believe Castanea stands covered a large area and were deforested only recently. Local people in Otaru believe that the stand in Temiya Park has existed since the Jomon Period. For a more accurate historical perspective on Japanese forestation, we have performed pollen analysis to clarify the timing of the introduction of the Castanea tree into Otaru region and to reveal the history of this specific Castanea stand in Temiya Park. The results indicate that Castanea was first found in Otaru region 7100 B.P., but that it was not cultivated extensively until recently. Based on our study, and on data from this area dating to the late 19th century, we concluded instead that the Castanea stand we studied in Temiya Park, Otaru, was established after the mid-20th century. We believe the results of this study are applicable to Castanea stands in other parts of Japan as well.