Highlighting ontogenetic shifts in habitat use by nocturnal coral reef fish

The lagoon of Moorea Island was characterised by 12 distinct reef zones. Visual censuses allowed us to document the spatial distributions of recently settled juveniles vs adults of 17 nocturnal fish species among the 12 reef zones. Five distinct patterns in habitat use were found: an increase in the number of reef zones used during the adult stage (four species); a decrease in the number of reef zones adults used compared to recently settled juveniles (two species); the use of different reef zones (one species); the use of same reef zones but with relative densities different (one species); and no change in habitat use (nine species). Overall, this study is the first to explore the use of space by a broad range of nocturnal fish taxa to document the patterns and determinism of habitat shifts between juvenile and adult life stages.     

Relative Importance of Coral Cover,Habitat Complexity and Diversity in Determining the Structure of Reef Fish Communities

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat characteristics are often not distinguished. Here, we investigate the strength of the relationships between these habitat features and local fish diversity, abundance and community structure in the lagoon of Lizard Island, Great Barrier Reef. In a spatial comparison using sixty-six 2m² quadrats, fish species richness, total abundance and community structure were examined in relation to a wide range of habitat variables, including topographic complexity, habitat diversity, coral diversity, coral species richness, hard coral cover, branching coral cover and the cover of corymbose corals. Fish species richness and total abundance were strongly associated with coral species richness and cover, but only weakly associated with topographic complexity. Regression tree analysis showed that coral species richness accounted for most of the variation in fish species richness (63.6%), while hard coral cover explained more variation in total fish abundance (17.4%), than any other variable. In contrast, topographic complexity accounted for little spatial variation in reef fish assemblages. In degrading coral reef environments, the potential effects of loss of coral cover and topographic complexity are often emphasized, but these findings suggest that reduced coral biodiversity may ultimately have an equal, or greater, impact on reef-associated fish communities.     

In situ observation of settlement behaviour in larvae of coral reef fishes at night

The swimming behaviour of 534 coral reef fish larvae from 27 species was explored at Moorea Island (French Polynesia) while they searched for a suitable settlement habitat, on the first night of their lagoon life. Most larvae swam actively (74%) and avoided the bottom (77%). A significant relationship was highlighted between the vertical position of larvae in the water column and the distance they travelled from lagoon entrance to settlement habitat: larvae swimming close to the surface settled farther away on the reef than bottom-dwelling larvae.     

Spatial predictability of juvenile fish species richness and abundance in a coral reef environment

Juvenile reef fish communities represent an essential component of coral reef ecosystems in the current focus of fish population dynamics and coral reef resilience. Juvenile fish survival depends on habitat characteristics and is, following settlement, the first determinant of the number of individuals within adult populations. The goal of this study was to provide methods for mapping juvenile fish species richness and abundance into spatial domains suitable for micro and meso-scale analysis and management decisions. Generalized Linear Models predicting juvenile fish species richness and abundance were developed according to spatial and temporal environmental variables measured from 10 m up to 10 km in the southwest lagoon of New Caledonia. The statistical model was further spatially generalized using a 1.5-m resolution, independently created, remotely sensed, habitat map. This procedure revealed that : (1) spatial factors at 10 to 100-m scale explained up to 71% of variability in juvenile species richness, (2) a small improvement (75%) was gained when a combination of environmental variables at different spatial and temporal scales was used and (3) the coupling of remotely sensed data, geographical information system tools and point-based ecological data showed that the highest species richness and abundance were predicted along a narrow margin overlapping the coral reef flat and adjacent seagrass beds. Spatially explicit models of species distribution may be relevant for the management of reef communities when strong relationships exist between faunistic and environmental variables and when models are built at appropriate scales.     

Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef

Adults of many closely related coral reef fish species are segregated along gradients of depth or habitat structure. Both habitat selection by new settlers and subsequent competitive interactions can potentially produce such patterns, but their relative importance is unclear. This study examines the potential roles of habitat selection and aggression in determining the spatial distribution of adults and juveniles of four highly aggressive damselfishes at Lizard Island, northern Great Barrier Reef. Dischistodus perspicillatus, D. prosopotaenia, D. melanotus, and D. pseudochrysopoecilus maintain almost non-overlapping distributions across reef zones, with adults of one species dominating each reef zone. Juveniles exhibit slightly broader distributional patterns suggesting that subsequent interactions reduce overlap among species. Although habitat choice experiments in aquaria suggest that associations between juveniles and substrata types in the field are partly due to habitat selection, large overlaps in the use of substrata by the different species were also found, suggesting that substratum selection alone is insufficient in explaining the discrete spatial distributions of adults. The strength of aggressive interactions among all four species was tested by a "bottle" experiment, in which an adult or juvenile of each species was placed in the territories of adult fish on the reef. The greatest levels of interspecific aggression were directed against adults and juveniles of neighbouring species. The highest levels of aggression were associated with species exhibiting the greatest levels of overlap in resource use. Evidently both habitat selection and interspecific aggression combine to determine the adult distributions of these species.     

Spatial structure of coral reef fish communities at Kudaka Island (Ryukyu Archipelago), Japan

The present study aimed to investigate the spatial structure of fish communities at juvenile and adult stages on coral reefs at Kudaka Island (Ryukyu Archipelago, Japan) and to relate spatial patterns in the structure of the fish communities to gradients in environmental variables. Diurnal visual censuses allowed us to record 2,602 juveniles belonging to 60 species and 1,543 adults belonging to 53 species from October to December 2005. The distribution of species highlighted that the juvenile community was organised into three distinct assemblages, rather than exhibiting gradual change in community structure along the cross-reef gradient. Correlations between spatial patterns of juvenile community and environmental variables revealed that the most significant factors explaining variation in community structure were coral rubble and coral slab. In contrast, the adult community was organised into one assemblage, and the most significant variation factors in community structure were depth, live coral in massive form, live coral in branched form, dead coral and sand. Overall, the present study showed that most juvenile and adult coral reef fish at Kudaka Island exhibited striking patterns in their distribution and depth and some biological factors (e.g., abundance of live coral, dead coral and coral rubble) might exert considerable influence on the distribution of fishes.     

Geography and island geomorphology shape fish assemblage structure on isolated coral reef systems

We quantify the relative importance of multi‐scale drivers of reef fish assemblage structure on isolated coral reefs at the intersection of the Indian and Indo‐Pacific biogeographical provinces. Large (>30 cm), functionally‐important and commonly targeted species of fish, were surveyed on the outer reef crest/front at 38 coral reef sites spread across three oceanic coral reef systems (i.e. Christmas Island, Cocos (Keeling) Islands and the Rowley Shoals), in the tropical Indian Ocean (c. 1.126 x 106 km²). The effects of coral cover, exposure, fishing pressure, lagoon size and geographical context, on observed patterns of fish assemblage structure were modelled using Multivariate Regression Trees. Reef fish assemblages were clearly separated in space with geographical location explaining ~53 % of the observed variation. Lagoon size, within each isolated reef system was an equally effective proxy for explaining fish assemblage structure. Among local‐scale variables, ‘distance from port’, a proxy for the influence of fishing, explained 5.2% of total variation and separated the four most isolated reefs from Cocos (Keeling) Island, from reefs with closer boating access. Other factors were not significant. Major divisions in assemblage structure were driven by sister taxa that displayed little geographical overlap between reef systems and low abundances of several species on Christmas Island corresponding to small lagoon habitats. Exclusion of geographical context from the analysis resulted in local processes explaining 47.3% of the variation, highlighting the importance of controlling for spatial correlation to understand the drivers of fish assemblage structure. Our results suggest reef fish assemblage structure on remote coral reef systems in the tropical eastern Indian Ocean reflects a biogeographical legacy of isolation between Indian and Pacific fish faunas and geomorphological variation within the region, more than local fishing pressure or reef condition. Our findings re‐emphasise the importance that historical processes play in structuring contemporary biotic communities.     

The influence of habitat characteristics and conspecifics on attraction and survival of coral reef fish juveniles

In marine species with a pelagic larval stage, search behavior and selection of a suitable reef habitat can maximize the settlement success of recently settled juveniles and their subsequent performance (growth and survival of juveniles). Our objective was to test this hypothesis for a single target coral reef fish species (Chromis viridis) at Moorea Island. C. viridis settle on living coral colonies of Porites rus already populated with conspecifics. In the present study (conducted in experimental cages), we found that: 1) mortality rate of recently settled juveniles of C. viridis was lower in the settlement habitat (living coral colonies of P. rus) than in other habitats having physical structure different from those of P. rus colonies; 2) C. viridis juveniles preferentially colonized coral heads of P. rus with conspecifics present rather than uninhabited coral heads and they also preferentially colonized uninhabited coral heads rather than coral heads with heterospecifics; 3) mortality rate of C. viridis juveniles did not vary with the presence or absence of conspecifics or heterospecifics on P. rus colonies. Overall, the study allows us to highlight that site selection by juveniles for habitat containing conspecifics does not benefit their short term mortality rates, suggesting that in the short term at least, site selection has little importance.     

How does shoreline development impact the recruitment patterns of coral reef fish juveniles (Moorea Island,French Polynesia)?

The study examined the effects of coastal embankment building on fish recruitment in three habitat types (beach-rock, white sand and muddy sand) in the near shore and fringing reef habitats of Moorea lagoon (French Polynesia). The results showed a positive relationship between the presence of embankments and the density and species richness of juvenile fish along the shoreline (whatever the habitat types). However, embankments deteriorated adjacent fringing reefs (decrease of live coral), which led to a decrease of fish density on beach-rock and white sand sites, and a decrease of fish species richness on muddy sand sites.     

Patterns of scleractinian coral recruitment at Lord Howe Island,an isolated subtropical reef off eastern Australia

Changing oceanic conditions, particularly ocean warming and altered currents, can affect the reproductive success of corals. Improving the knowledge of coral reproductive processes at the marginal range limits of coral reefs is important for understanding the ecology of subtropical coral communities and the potential for coral species to expand their ranges in higher latitudes in the future. The extent of live coral cover around subtropical Lord Howe Island (LHI; 31°33′S, 159°05′E) approximately 600 km off the east coast of Australia, has been relatively stable over the last several decades; however, shifts in dominant species in the adult coral community have been reported. To examine the potential influences of recent altered currents and shifts in dominant scleractinian taxa within this community, this study examined spatial and seasonal variation of coral larval settlement at different habitats within the LHI reef lagoon. The study also assessed whether the assemblage of scleractinian corals settling at LHI has changed between 1990–1991 and 2011–2012. Mean densities of coral settlement in 2011–2012 (230 spat m^?2 yr^?1) were consistent with those reported in 1990–1991 and in other regions. However, changes in taxonomic composition were apparent with increases in the proportion of Acroporidae spat at some sites. Settlement of all taxa was highest over summer months, whereas during winter only one coral spat (Pocilloporidae) was detected. Coral settlement was highest and most taxonomically diverse at sites closest to the reef crest, where mortality of settled spat was also greatest. Rates of settlement were high compared with juvenile densities; hence, post-settlement mortality is also likely to be high. Post-settlement processes, influenced by local environmental conditions, are likely to be very important in structuring the adult coral communities within the LHI reef lagoon.     

Seasonal recruitment,habitat associations and survival of pomacentrid reef fish in the US Virgin Islands

Patterns of distribution and abundance of coral reef fish depend in part on recruitment of a pelagic larval stage, on subsequent dispersal among habitats, and survival of new recruits. We studied recruitment of five species of Stegastes and two species of Chromis damselfish onto reef habitats of St. Thomas, USVI during one year. The two study sites, Flat Cay and Outer Brass Island, were on the southern and northern sides of St. Thomas, respectively. At both sites, recruitment occurred largely in the summer months, although one species (Stegastes planifrons) showed significant winter recruitment at Flat Cay. The onset of increased summer recruitment in 1992 of other species occurred several weeks later and was shorter in duration at Outer Brass Island than at Flat Cay, perhaps indicating differences in oceanographic conditions (currents etc.) or spawning cycles between sites. The two Chromis species showed lunar periodicity of settlement at Flat Cay. At Flat Cay, recruits of three species (S. leucostictus, S. diencaeus and S. planifrons) were associated with conspecifics possibly due to preferential settlement. Similarly, new recruits were more often found near live coral than coral rubble, and very few occurred on sand habitat. Substratum complexity was a poor predictor of recruitment within a habitat, although larger juveniles of some species were more common on more complex substrate. Contrary to other studies, there were no apparent depth preferences among recruits, although larger juveniles of two Stegastes species were found more often in deeper water. It appears that within habitats, newly arriving larvae may be attracted first to the presence of conspecifics and secondarily take up position adjacent to live coral. Apparent survivorship of some Stegastes species and one Chromis species was higher at Outer Brass Island than at Flat Cay, and may partly compensate for lower recruitment of some species at Outer Brass Island.     

Understanding the Spatio-Temporal Response of Coral Reef Fish Communities to Natural Disturbances: Insights from Beta-Diversity Decomposition

Understanding how communities respond to natural disturbances is fundamental to assess the mechanisms of ecosystem resistance and resilience. However, ecosystem responses to natural disturbances are rarely monitored both through space and time, while the factors promoting ecosystem stability act at various temporal and spatial scales. Hence, assessing both the spatial and temporal variations in species composition is important to comprehensively explore the effects of natural disturbances. Here, we suggest a framework to better scrutinize the mechanisms underlying community responses to disturbances through both time and space. Our analytical approach is based on beta diversity decomposition into two components, replacement and biomass difference. We illustrate this approach using a 9-year monitoring of coral reef fish communities off Moorea Island (French Polynesia), which encompassed two severe natural disturbances: a crown-of-thorns starfish outbreak and a hurricane. These disturbances triggered a fast logistic decline in coral cover, which suffered a 90% decrease on all reefs. However, we found that the coral reef fish composition remained largely stable through time and space whereas compensatory changes in biomass among species were responsible for most of the temporal fluctuations, as outlined by the overall high contribution of the replacement component to total beta diversity. This suggests that, despite the severity of the two disturbances, fish communities exhibited high resistance and the ability to reorganize their compositions to maintain the same level of total community biomass as before the disturbances. We further investigated the spatial congruence of this pattern and showed that temporal dynamics involved different species across sites; yet, herbivores controlling the proliferation of algae that compete with coral communities were consistently favored. These results suggest that compensatory changes in biomass among species and spatial heterogeneity in species responses can provide further insurance against natural disturbances in coral reef ecosystems by promoting high levels of key species (herbivores). They can also allow the ecosystem to recover more quickly.     

Spatio-temporal variability in fish recruitment to a coral reef (Moorea,French Polynesia)

Spatial and temporal patterns of recruitment of juvenile coral reef fishes were studied on the reefs of the high island of Moorea (Society Archipelago, French Polynesia) during the wet season (October 1988 to April 1989). Two size-classes of fishes (new-recruits and juveniles) were censused by visual counts within 24 quadrats along a transect across the lagoon. Correspondence analysis was used to calculate the hypothetical movements of the two size classes. Spatial variability was far more important than temporal variability; six main spatial communities were revealed, which could result from differences among habitats. Temporal variability in recuitment occurred only at nearshore stations; stations on the outer fringing reef and inner barrier reef displayed stable recruitment patterns.     

Hypoxia in paradise: widespread hypoxia tolerance in coral reef fishes

Using respirometry, we examined the hypoxia tolerance of 31 teleost fish species (seven families) inhabiting coral reefs at a 2-5 m depth in the lagoon at Lizard Island (Great Barrier Reef, Australia). All fishes studied maintained their rate of oxygen consumption down to relatively severe hypoxia (20-30% air saturation). Indeed, most fishes appeared unaffected by hypoxia until the oxygen level fell below 10% of air saturation. This, hitherto unrecognized, hypoxia tolerance among coral reef fishes could reflect adaptations to nocturnal hypoxia in tide pools. It may also be needed to enable fishes to reside deep within branching coral at night to avoid predation. Widespread hypoxia tolerance in a habitat with such an extreme biodiversity as coral reefs indicate that there is a wealth of hypoxia related adaptations to be discovered in reef fishes.     

Relationships between coral reef substrata and fish

 The objective of this work is to identify which substrata characteristics (such as coral morphology, coral diversity, coral species richness, percentage coverage by live coral or by algae) influence the structure and abundance of fish communities. The study was carried out at Reunion Island, Indian Ocean, where six sites were sampled in two zones (reef flat and outer reef slope). Quantitative data were collected by visual census techniques, along a linear transect of 50 m for the substratum, and a belt of 50×2 m for the fish communities. Correspondence analysis (CA) and an optimising cluster analysis, called dynamic clustering method (DCM) were used to describe and compare fish assemblages with the benthic composition. The relationships between benthic and fish communities were examined using the classes revealed by the partitioning of the substratum with DCM. This partitioning allowed us to derive four classes of substratum: the non-disturbed reef flat, the non-disturbed outer reef slope, the perturbed reef habitat and the reef pass. The analysis of the partitioning based on the coral variables suggests that there are significant relationships between benthic and fish assemblages. Accepted: 26 July 1996     

Can differences in the structure of larval,juvenile and adult coral‐reef fish assemblages be detected at the family level?

Processes occurring at the end of the larval stage are of major importance in shaping spatial structure of fish assemblages in coral reefs. However, because of the difficulty in identifying larvae to species, many studies dealing with these stages are limited to the family level. It remains unknown if variation in the spatial structure of coral‐reef fish assemblages across life stages can be detected at such a coarse taxonomic level. Two different surveys conducted in a similar area of New Caledonia, Southwest Pacific, provided the opportunity to compare the structure of coral‐reef fish assemblages collected as pre‐settlement larvae, juveniles and adults along a coast to barrier reef gradient. Adult and juvenile fish were sampled using underwater visual counts (UVC) during the warm seasons of 2004 and 2005. Pre‐settlement larvae were sampled with light‐traps during the same seasons. In order to standardize data between sampling methods, analyses were conducted on the relative abundance (for larvae) and density (for juveniles and adults) of 21 families commonly collected with both methods. Relative abundances/densities of families were analysed as a function of life stage (larvae, juveniles or adults), large‐scale spatial location (coast, lagoon or barrier) and years (2004, 2005) using non‐parametric multidimensional scaling (nMDS) and permutational multivariate analysis of variance (permanova ). Kruskal–Wallis tests were then used to examine differences among life stages and locations for individual families. Different levels of spatial and temporal variability characterized fish assemblages from different life stages, and differences among life stages were detected at all locations and years. Differences among life stages were also significant at the level of individual families. Overall results indicate that studies conducted at the family level may efficiently reveal changes in coral‐reef fish spatial structure among successive life stages when large spatial scales are considered.     

Size-related habitat use and schooling behavior in two species of surgeonfish (Acanthurus bahianus and A. coeruleus) on a fringing reef in Barbados, West Indies

Surgeonfish (Acanthuridae) are prominent, herbivorous members of coral reef communities that occur as dispersed individuals and small, loose groups ('non-schooling fish') or as members of large, highly aggregated, mixed-species schools ('schooling fish'). We examined the relationships among fish size, habitat use and schooling in two species of surgeonfish on a fringing reef in Barbados, West Indies. Both ocean surgeonfish, Acanthurus bahianus, and blue tangs, A. coeruleus, appeared to show ontogenetic habitat shifts. The density of juvenile ocean surgeonfish was highest in the back reef (inshore), lower on the reef crest (intermediate) and lowest in the spurs and grooves (offshore) zone, but schooling adults were most abundant in the spurs and grooves zone. In a multiple regression considering the effects of depth, algal cover, rugosity and distance from shore, the density of non-schooling ocean surgeonfish was positively associated with percent algal cover on the substratum and negatively with distance from shore. Newly settled blue tangs occurred only in the reef crest and spurs and grooves zones, but larger juveniles were more common in the back reef, while adults were more evenly distributed across zones. The density of non-schooling blue tang was positively associated with rugosity, distance from shore, and percent algal cover. In both species, schooling occurred primarily in adults; small juveniles never participated in the large, dense schools. The proportion of adults that were schooling increased from the back reef to the reef crest to the spurs and grooves zone. These results are consistent with the hypothesis that schooling permits adult surgeonfish access to higher quality food in the territories of damselfish (Pomacentridae) that predominate on the reef crest and spurs.     

Temporal dynamics of coral reef fish communities in Nha Trang Bay marine protected area,South-Central Vietnam

To improve understanding of reef fish communities of Vietnam’s first dedicated marine protected area, visual censuses were conducted seasonally from 2003–05 in Nha Trang Bay, south-central Vietnam using SCUBA. Results from this study show that species richness were usually higher in summer than winter and that decreased from summer to winter in both shallow and deep areas in this MPA, but this apparent decrease was not significant. There were significant variations in density of reef fish communities between seasons with higher densities in summer (from April to September) and lower densities in winter (from October to March). The families contributing most to the higher density during summer in the 3 years were acanthurids, chaetodontids, labrids, pomacentrids, scarids, siganids, pomacanthids and caesionids. The increased density of these families in summer was mostly due to increases of juveniles. Recruitment of acanthurids, chaetodontids, labrids, pomacentrids, scarids and siganids occurred primarily in shallow waters whereas caesionids and pomacanthids were mainly recruiting in deeper areas. There were no differences in spatial variations in both species richness and density within the same time periods over several years.     

Coral communities of barrier reefs of Vietnam

The composition and spatial distribution of the coral communities of the barrier reefs of Jiang Bo and of Re Island were described in detail for the first time for Vietnamese waters. Their comparability to the ribbon reefs of the Great Barrier Reef in Australia and to the barrier reefs of the Philippines and Indian Ocean was revealed by morphological parameters, species diversity and zonal distribution. Their geomorphological status, the presence of fore reef, epi-reef and back reef complexes with their specific composition of flora and fauna, and an obligatory lagoon separating the reef from fringing inshore reefs, enabled the attribution of the surveyed reefs to the barrier type of reef.