新疆动物源大肠杆菌小菌落变异体生物学特性分析

【背景】小菌落变异体(small colony variants, SCVs)在细菌耐药和持续残留等过程中发挥着重要作用,但目前国内鲜有动物源大肠杆菌(Escherichiacoli,EC)SCVs的相关报道。【目的】对新疆动物源EC-SCVs的生物学特性进行对比研究分析,为国内EC-SCVs的相关研究提供基础数据。【方法】使用氨基糖苷类抗生素对新疆动物源大肠杆菌进行诱导,使其形成SCVs。然后对野生株和诱导株进行培养特征、生化特性、药物敏感性、运动力、生物被膜和溶血活性等生物学特性检测。【结果】经卡那霉素和庆大霉素诱导,从牛、羊和马源大肠杆菌中得到5株EC-SCVs(2株为血红素依赖型,3株未知其营养依赖型)。与野生株相比,EC-SCVs的生化特性改变,所有EC-SCVs转变为不利用醋酸盐,在不同培养基中的培养特征也存在差异。并且对氨基糖苷类抗生素的耐受性增强,生物被膜形成能力增强,但运动力下降。除血红素依赖型EC-SCVs的溶血活性增强外,其他SCVs的溶血活性并无差异。【结论】动物源EC-SCVs的生物学特性与野生株相比有较大差异,这些生物学特性的改变可能会给大肠杆菌致病或耐药等...     

动物线粒体假基因的识别及其在进化生物学中的应用

在真菌、昆虫、无脊椎动物和脊椎动物等许多分类单元中,都已发现mtDNA序列的核转座现象。在PCR扩增时,往往同时扩增出mtDNA和细胞核中线粒体假基因(Numts),Numts混淆系统发育和群体遗传研究,得出错误的结果。本文综述了Numts的检查和避免的方法,以及在进化生物学研究中的应用进展。     

基于进化思想和理论对初中生物学课程思政的探讨——以北师大版初中生物学八年级（下册）为例

初中生物学涉及的生物进化知识蕴含着许多思政元素,而融入生物进化思想观念不仅有利于实现课程育人功能,也对核心素养提升大有裨益。在初中生物学大概念教学的基础上渗透生物进化思想,不仅可以帮助教师提高教学效果,也有利于提高学生生物学学科核心素养。     

桃儿七传粉生物学特性及其在进化上的意义

对分布于云南中甸县不同居群的桃儿七进行了传粉生物学特性研究,结果如下：（１）首次发现其具有一种适应于自花授粉的传粉机制。即在花尚未开放或刚开放时,雌蕊呈直立状,而一旦花完全开放时,子房柄会发生弯曲,以致整个雌蕊靠向某一花药,从而使柱头与花药贴合实现传粉;当完成传粉后,雌蕊又重新直立,此时受精作用也随之完成。整个传粉、受精过程仅需４￣６ｈ。（２）其生殖节律快,有效率高。从孢子母细胞减数分裂开始到双受     

进化观点与有机结构进化的根本问题——谨以此文悼念中国自然辩证法研究会前秘书长查汝强先生

1.生物体内的一切有机结构及其所进行的生命活动过程全都是进化的产物。生命在本质上就是跟进化密不可分的。因此,进化的观点在一切生物学领域都是普遍有效的,包括细胞生物学和分子生物学。从进化的观点进行考察,是进一步发展细胞生物学以至分子生物学的一条新的必然的道路,即进化细胞生物学的道路。 2.本文结合有机结构的层次性分析了有机结构的结构体制、其所进行的生命活动的活动机理与它们所承担的机能任务三者之间的内在联系。 3.有机结构与其生命活动过程的进化的动力源泉,在于它们与其所承担的机能任务之间的矛盾。没有这种根本性的矛盾,也就不会有任何结构体制或活动机理的进化。进化中起决定性作用的并不是突变,而是决定着自然选择的方向、亦即进化方向的上述矛盾。这种矛盾的具体状态还会极大地影响各种非中性突变有利或有害的程度。外界环境的改变也是通过激化上述的矛盾,才能对进化起作用、各种有利于缓解已经激化了的矛盾的突变,将会以异常之高的机率在自然选择中得到保存。 4.进化方向的转换起因于有机结构或具体的生命活动过程担负起了新的机能任务,或原先的次要机能转化成了主要机能。有机结构与新的机能或新的主要机能之间的矛盾决定了新的进化方向。 5.进化历史中一种有机结构为同功     

车前属(Plantago L.)植物生态与进化生物学研究进展

车前属植物是理论生态学、生理生态学、进化生物学研究的理想材料。本文综述了近年来国内外学者在车前属生态学、进化生物学、系统分类学方面的研究概况。     

车前属（Plantago L.）植物生态与进化生物学研究进展

车前属植物是理论生态学、生理生态学、进化生物学研究的理想材料。本文综述了近年来国内外学者在车前属生态学、进化生物学、系统分类学方面的研究概况。     

进化代谢选育高渗透压耐受型产琥珀酸大肠杆菌

在以碳酸钠为酸中和剂的大肠杆菌两阶段发酵产琥珀酸的过程中,由于Na+的积累造成发酵体系中渗透压的提高,严重抑制了琥珀酸的产物浓度。为了增强大肠杆菌对渗透压的耐受性,考察了利用进化代谢方法筛选高渗透压耐受型高产琥珀酸大肠杆菌菌株的可行性。进化代谢系统作为一种菌株突变装置,可以使菌体在连续培养条件下以最大的生长速率生长。以NaCl为渗透压调节剂,通过在连续培养装置中逐步提高NaCl浓度使菌体在高渗透压条件下快速生长,最终得到了一株高渗透压耐受型琥珀酸生产菌株Escherichia coli XB4。以碳酸钠为酸中和剂,在7 L发酵罐中利用Escherichia coli XB4进行两阶段发酵,厌氧培养60 h后,琥珀酸产量达到了69.5 g/L,琥珀酸生产速率达到了1.81 g/(L.h),分别比出发菌株提高了18.6%和20%。     

工程大肠杆菌合成游离脂肪酸的研究进展

游离脂肪酸作为一种重要的平台化合物,其衍生产品被广泛应用到能源、化学工业中。作为更加可持续、绿色的生产策略,利用工程微生物合成游离脂肪酸是以石油基和动植物为原料生产脂肪酸类产品的重要补充。大肠杆菌作为经典的模式微生物,通过对其进行代谢工程改造,脂肪酸的积累已经从痕量提高到了约9g/L,展示了其作为脂肪酸合成菌株的巨大应用潜力。随着合成生物学技术的涌现,“感应-调控器”、体外重构、β氧化逆循环、异源合成途径的整合等思路的引入极大地加快了工程大肠杆菌脂肪酸合成的进化速率,并赋予大肠杆菌合成多种脂肪酸产品的能力。对近年来通过代谢工程和合成生物学手段改造大肠杆菌合成游离脂肪酸的研究进展进行综述,对其发展前景进行展望。     

合成生物学方法构建电活性大肠杆菌

电活性微生物具有独特的在细胞内外环境之间传递电子的能力。在对天然电活性微生物电子传递机制充分研究的基础上,通过合成生物学方法异源构建天然电活性微生物电子传递结构基础也可以将遗传背景清晰的非电活性大肠杆菌改造为电活性微生物。构建获得的工程化电活性大肠杆菌可以直接应用于微生物燃料电池和生物传感器等领域,同时也可以作为底盘细胞整合相应的目标产物合成通路实现电能驱动的生物合成。本文以合成生物学方法构建电活性大肠杆菌为主题,详细阐述天然电活性微生物电子传递的机理及结构基础,总结了工程化电活性大肠杆菌的构建策略、成功案例以及应用领域,并对合成生物学方法构建电活性大肠杆菌未来的研究方向进行了展望。     

Automated Counting of Microbial Colonies

The time required for direct counting of colonies on agar plates for estimating population density of viable microorganisms has precluded studies requiring measurement of such a parameter. Bowman, Blume, and Vurek have described a photo-electrical capillary tube scanner which automates the counting. Results obtained with an instrument similar to that of Bowman et al. have been intensively analyzed with respect to precision and accuracy. The sources of "errors" have been ascertained, and the instrument's potentialities and limitations are discussed.     

Established Microbial Colonies Can Survive Type VI Secretion Assault

Type VI secretion (T6S) is a cell-to-cell injection system that can be used as a microbial weapon. T6S kills vulnerable cells, and is present in close to 25% of sequenced Gram-negative bacteria. To examine the ecological role of T6S among bacteria, we competed self-immune T6S+ cells and T6S-sensitive cells in simulated range expansions. As killing takes place only at the interface between sensitive and T6S+ strains, while growth takes place everywhere, sufficiently large domains of sensitive cells can achieve net growth in the face of attack. Indeed T6S-sensitive cells can often outgrow their T6S+ competitors. We validated these findings through in vivo competition experiments between T6S+ Vibrio cholerae and T6S-sensitive Escherichia coli. We found that E. coli can survive and even dominate so long as they have an adequate opportunity to form microcolonies at the outset of the competition. Finally, in simulated competitions between two equivalent and mutually sensitive T6S+ strains, the more numerous strain has an advantage that increases with the T6S attack rate. We conclude that sufficiently large domains of T6S-sensitive individuals can survive attack and potentially outcompete self-immune T6S+ bacteria.     

Improved Recoverability of Microbial Colonies from Marine Sponge Samples

Abstract The growth of microorganisms from marine sponge samples was studied on various low to high nutrient solid media using media supplements. The supplements utilized were catalase, sodium pyruvate, and a combination of the two. Medium composition was found to influence the growth response on the supplemented media. Microorganisms on low nutrient media responded more favorably to the media additions than on high nutrient media. Thirty-five percent of the supplemented media demonstrated colony forming unit (CFU) recoveries that were 50% or greater than those of the unamended control plates. Twenty-one percent showed recoveries of more than 100% of the control values, with sodium pyruvate additions providing for the greatest overall increase in recovery, whether alone or in conjunction with catalase. These findings suggest that addition of catalase or sodium pyruvate to solid growth and isolation media may improve recoverability of microorganisms from natural samples. Received: 24 January 2000; Accepted: 9 June 2000; Online Publication: 28 August 2000     

Serotonin and Inhibition in Limulus Lateral Eye

The response to light of one ommatidium is reduced or suppressed by simultaneous illumination of neighboring ommatidia. The mechanism of this lateral inhibition may be chemical synaptic transmission, based on the physiological findings of a number of investigators and on the following evidence. The fine structure of the neuropil of the lateral plexus exhibits numerous clear vesicles (ca. 400 A), dense-core vesicles (ca. 700–1400 A), Golgi regions, and other morphological features of neurochemical synapses. The indolealkylamine, serotonin (5-HT), even in nanomolar concentrations, has a potent inhibitory action. An initial, potent inhibitory dose of 5-HT produces a long lasting densensitization to subsequent doses. The desensitization affects lateral inhibition evoked by light stimulation of neighboring receptors, i.e. crossed-desensitization. Eye tissue extracts contain 5-HT and melatonin (MLT) at a level greater than 1 µg/g wet tissue and perhaps as high as 20–30 µg/g, as determined by two-dimensional thin-layer chromatography (TLC) and o-phthaldialdehyde fluorescence assay techniques. Subcellular fractionation on sucrose gradient indicates a peak in 5-HT and MLT content associated with an intermediate density fraction. 5-HT may be an inhibitory transmitter for lateral inhibition. One pathway for metabolism of 5-HT in the lateral eye may be via N-acetylserotonin and melatonin.     

Thermal Sensitivity of Lateral Inhibition in Limulus Eye

The effectiveness of lateral inhibition, measured as spike response decrement in a test ommatidium, produced by activity in a group of neighboring ommatidia, decreases as temperature decreases (Q₁₀ of 2.6). The corresponding sensory transducer-spike encoding processes have a weaker temperature dependence (Q₁₀ of 1.6). Relative synaptic delay, the time difference between the latency of inhibition onset and the latency of test receptor excitation, has a strong temperature dependence (Q₁₀ of 5), while receptor potential onset latency (Q₁₀ of 1.4) and optic nerve spike conduction velocity (Q₁₀ of 1.7), two factors inherent in relative synaptic delay, are less temperature sensitive. Oscillations of optic nerve spike response ("bursting") may be produced by thermal adjustment of temperature-sensitive parameters of the lateral inhibitory network in the retina. Burst interval has a strong temperature dependence (Q₁₀ of 2.4) and broad interspike interval distribution compared to the thermal sensitivity (Q₁₀ of 1.4) and narrow spike interval spectrum of the response of a single unit within the bursting group.     

COVASIAM: an Image Analysis Method That Allows Detection of Confluent Microbial Colonies and Colonies of Various Sizes for Automated Counting

In this work we introduce the confluent and various sizes image analysis method (COVASIAM), an automated colony count technique that uses digital imaging technology for detection and separation of confluent microbial colonies and colonies of various sizes growing on petri dishes. The proposed method takes advantage of the optical properties of the surfaces of most microbial colonies. Colonies in the petri dish are epi-illuminated in order to direct the reflection of concentrated light coming from a halogen lamp towards an image-sensing device. In conjunction, a multilevel threshold algorithm is proposed for colony separation and counting. These procedures improved the quantification of colonies showing confluence or differences in size. We tested COVASIAM with a sample set of microorganisms that form colonies with contrasting physical properties: Saccharomyces cerevisiae, Aspergillus nidulans, Escherichia coli, Azotobacter vinelandii, Pseudomonas aeruginosa, and Rhizobium etli. These physical properties range from smooth to hairy, from bright to opaque, and from high to low convexities. COVASIAM estimated an average of 95.47% (ς = 8.55%) of the manually counted colonies, while an automated method based on a single-threshold segmentation procedure estimated an average of 76% (ς = 16.27) of the manually counted colonies. This method can be easily transposed to almost every image-processing analyzer since the procedures to compile it are generically standard.     

Microbial Community Compositional Shifts in Bleached Colonies of the Brazilian Reef-Building Coral Siderastrea stellata

The association of metazoan, protist, and microbial communities with Scleractinian corals forms the basis of the coral holobiont. Coral bleaching events have been occurring around the world, introducing changes in the delicate balance of the holobiont symbiotic interactions. In this study, Archaea, bacteria, and eukaryotic phototrophic plastids of bleached colonies of the Brazilian coral Siderastrea stellata were analyzed for the first time, using 16S rRNA gene libraries. Prokaryotic communities were slightly more diverse in healthy than in bleached corals. However, the eukaryotic phototrophic plastids community was more diverse in bleached corals. Archaea phylogenetic analyses revealed a high percentage of Crenarchaeota sequences, mainly related to Nitrosopumilus maritimus and Cenarchaeum symbiosum. Dramatic changes in bacterial community composition were observed in this bleaching episode. The dominant bacterial group was Alphaproteobacteria followed by Gammaproteobacteria in bleached and Betaproteobacteria in healthy samples. Plastid operational taxonomic units (OTUs) from both coral samples were mainly related to red algae chloroplasts (Florideophycea), but we also observed some OTUs related to green algae chloroplasts (Chlorophyta). There seems to be a strong relationship between the Bacillariophyta phylum and our bleached coral samples as clones related to members of the diatom genera Amphora and Nitzschia were detected. The present study reveals information from a poorly investigated coral species and improves the knowledge of coral microbial community shifts that could occur during bleaching episodes.