Slow death of Atlantic forest trees in cocoa agroforestry in southeastern Brazil

Cocoa (Theobroma cacao) is cultivated in the states of Bahia and Espírito Santo in eastern Brazil under the so-called cabruca system, where the understorey of native Atlantic forest is cleared and the canopy is thinned out to provide adequate shading for the cocoa trees. Apart from its economic and social role, the cabruca system is said to be important for the conservation of Atlantic forest biodiversity. In this paper we studied tree species richness and forest structure of cabrucas to examine the demographic health of these forests and discuss their long-term survival. Data were collected in 20 farms located alongside a 30km track of the northern margin of the Rio Doce, in northern Espírito Santo. All trees 5cm DBH were identified and their diameter was measured in 80 plots (600m²), totalling 4.8ha of sampled area. Recorded trees were also allocated to four different regeneration phases (pioneers, early secondary, late secondary and climax). The inventory resulted in 507 trees belonging to 105 species in 39 families. This species richness is much lower than in less disturbed forests located in the region. Pioneers and early secondary species dominate the cabruca forest in terms of number of species (56.2%), density (71.0%) and basal area (72.3%). The distribution of diameter frequency showed an imbalance in tree regeneration. Most trees in the range of 5–30cm DBH were pioneers (40.7%), or early secondary species (32.6%), while late secondary and climax trees were less frequent (10.2 and 16.5% of the sampled trees, respectively). The dominance of species of early regeneration phases was also observed for trees >30cm DBH (69.0% of pioneers or early secondary and 31.0% of late secondary or climax species). The results indicated that the cabruca forests are not only less diverse and less dense than secondary or primary forests of the region, but also, and more importantly, their natural succession and gap dynamics are being severely impaired. As a consequence, cabrucas present a structure where tree species of late successional phases are becoming increasingly rare while pioneers and early secondary species are becoming dominant. If current management practices of thinning and clearing of native trees are not improved, the long-term survival of these forests is questionable and their role in maintaining biodiversity in the long run is limited.     

Tijuca National Park: two pioneering restorationist initiatives in Atlantic forest in southeastern Brazil.

As a contribution to the environmental history of the Tijuca National Park, we report on two pioneering restorationist initiatives and list its the mammal species now found in this urban park. The Tijuca National Park (TNP), a 3,200 ha urban park covered by secondary tropical forest, is located within Rio de Janeiro, in southeastern Brazil. The two restorationist initiatives were a pioneer tropical forest restoration project in the nineteenth century and a fauna management project in the 70' s. The mammal list presented here was based on specimens in the Museu Nacional do Rio de Janeiro and on publications. The mammal community of TNP is composed of 49 species, of which 11 are on regional red lists, and four are on the 2003 IUCN Red List of Threatened Species. Occurrence of these threatened species and the park history itself made the TNP a priority site for studying conservation, management, and monitoring. Besides maintaining fauna and flora (including threatened species) diversity, the park benefits the population of Rio de Janeiro by providing water, green areas, and recreational and touristic opportunities.     

Fishes of the southeastern Brazil Atlantic Forest

The largest preserved areas of Atlantic Forest are located in the southeastern region of Brazil. Estuaries, mangroves, rivers and streams are home to a community of fish that is still poorly understood. The composition of fish species and their relationships with environmental conditions were used to identify homogeneous areas within a landscape of 33,000 km². A total of 6,542 specimens, representing 124 species and 13 orders of bony fishes were collected at 102 sampling stations. Resulting scores from a canonical correspondence analysis applied to biological and environmental data were used in a cluster analysis to identify fish species with similar spatial distributions and localities with similar fish fauna and abiotic conditions. Five micro-regions were identified, with homogeneous compositions of species, allowing better planning of conservation of aquatic biodiversity. Despite a high degree of preservation, impacts due to deforestation, drainage of wetlands and overfishing were detected, as well as the introduction of 41 exotic species.     

Effects of fragmentation on forest structure and litter dynamics in Atlantic rainforest in Pernambuco, Brazil

This study evaluates the effects of fragmentation on the spatial and temporal dynamics of small litterfall production in Atlantic rainforest in Pernambuco State, Brazil. Litterfall was collected for 24 months at two 0.2 ha sites, located in the forest edge zone and the forest interior, within a rainforest patch of about 300 ha. Structural parameters of both forest sites were recorded. Litter was sorted into six fractions (foliage, twigs, buds/flowers, fruits/seeds, peduncles, rest), dried and weighed. The interior forest plot contained 314 live trees with a dbh 5 cm and a stand basal area of 41.8±8.7 m², whereas the forest edge contained 211 live trees and a stand basal area of 23.4±3.6 m². Total small litterfall was extraordinarily high and totalled 12.62±4.73 t ha⁻¹ yr⁻¹ in interior forest and 14.74±2.78 t ha⁻¹ yr⁻¹ in forest edge. High litterfall rates are probably due to a pronounced periodicity, edge effects alter litterfall strongly.     

Siphonaptera parasites of wild rodents and marsupials trapped in three mountain ranges of the Atlantic forest in southeastern Brazil

A study of the associations between small mammals and fleas was undertaken in three areas of the Atlantic Forest in Southeastern Brazil: Serra da Fartura, SP, Serra da Bocaina, SP, and Itatiaia, RJ. Trapping of small rodents and marsupials was done every 3 months during 2 years, from June 1999 to May 2001. A total 502 rodents (13 species) and 50 marsupials (7 species) were collected, and 185 hosts out of 552 (33.5%) captured in the traps were parasitized by 327 fleas belonging to 11 different species. New host records were determined for several flea species, and 5 significant associations between fleas and hosts were also found.     

Diet of the thin-spined porcupine (Chaetomys subspinosus), an Atlantic forest endemic threatened with extinction in southeastern Brazil

Chaetomys is a poorly known, monotypic genus of tree porcupine threatened with extinction due to deforestation and habitat fragmentation. Its nocturnal habit, relatively restricted distribution and low level of activity have conspired for decades against detailed field studies. Here the diet of the species in restinga forests is described for the first time. Restinga is a subtype of lowland Atlantic forest occurring on sandy soils close to the Atlantic littoral in Brazil. Three radio-collared females were monitored for 12 months between March 2005 and February 2006. Leaves were the most heavily consumed dietary item, varying from 71.9% to 75.4% of the diet of each individual, followed by flowers (7.7% - 15.7%) and fruits (0 - 1.4%). Animals fed on 57 trees from 14 species, with a higher concentration on Pera glabrata (49.8%) and Tapiriria guianensis (22.7%). Pera glabrata is locally abundant and widely distributed in the Atlantic forest. Each individual consumed a smaller subset of plant species (4-10 species/individual) and shared only the two most important tree species (P. glabrata and T. guianensis). Results corroborate previous studies indicating that Chaetomys is a folivore, perhaps the most folivorous amongst the Erethizontidae. Since the most consumed plant species are relatively common and widespread, Chaetomys might thrive in a broader range of habitats than previously suspected, including secondary forests.     

Phytogeography of the liverwort flora of the Atlantic Forest of southeastern Brazil

Abstract

This work analyzes the phytogeographic patterns of the liverwort flora of the Atlantic Forest of the Rio de Janeiro State, south-eastern Brazil. The analysis was based on inventories made in fragments of Atlantic Forest in the state, collections from the RB herbarium, and information from the checklist and database of the bryoflora of Rio de Janeiro. The phytogeographic pattern for each taxon was characterized based on its current distribution. Three hundred and sixty liverwort taxa are recognized for Rio de Janeiro. The liverwort flora varies along an altitudinal gradient within the Atlantic Forest, with the montane belt having the greatest species richness (238), the highest number of exclusive taxa (63) and the greatest number of endemic species (23). The predominant phytogeographic element is of neotropical species (49%), followed by disjunct liverworts (18%). Forty-one taxa (11%) are endemic to the country, of which 34 are restricted to the Atlantic Forest. In the lowland and submontane formations species are wide-ranging, whereas the montane and upper montane formations are characterized by endemic species or those disjunct with the Andes. The liverwort flora emphasizes the importance of the fragments of Atlantic Forest in Rio de Janeiro as a centre of diversity and endemism, supporting 50% of the total liverwort species known in Brazil, 72% of those recorded from Atlantic Forest and 55% of the endemic species of the country. Species with an Afro-American and Andean disjunction make up a characteristic part of the liverwort flora, probably reflecting the effects of long-distance dispersal by air currents, migration over land before the breakup of the continents and climatic similarities between the high-altitude grasslands and the northern Andes.     

The distribution of forest passerine birds and Quaternary climatic change in tropical Africa

A cluster analysis of the distribution patterns of forest passerine birds in tropical Africa showed that they could be divided into three main distribution types: those of restricted distribution (144 species), those of disjunct distributions across West, Central and rarely to East Africa (65 species) and those of very wide distribution (81 species). Centres of species richness, endemism and disjunction coincide spatially, and are identified as forest refugia, where forest persisted throughout Quaternary climatic vicissitudes. These distribution patterns agree with modern interpretations of Quaternary palaeoclimatic changes, which show that glacial periods were arid and interglacials humid. Glacial periods were therefore too dry for montane forest to have spread into areas at present occupied by lowland forest, as advocated by Moreau and other supporters of ihe pluvial theory; montane forest is probably as extensive now as at any time during the Quaternary and there is no evidence of past connections between currently isolated montane forests. Bird distribution can be explained largely by slow dispersal outwards from refugia as climatic conditions allowed forest to spread, combined with a relaxing of the distinction between montane and lowland species under conditions of reduced interspecific competition.     

Three new species of melastomataceae from the southeastern Atlantic Forest of Brazil

Three species are described here that occur in montane and high-montane forests in Southeastern Brazil.Miconia shepherdii belongs to sectionGlossocentrum and occurs on the Serra da Mantiqueira, on the border between the states of São Paulo, Minas Gerais, and Rio de Janeiro.Miconia kollmannii belongs to sectionHypoxanthus (formerChaenanthera) and occurs in the state of Espírito Santo.Ossaea suprabasalis was also collected in the state of Espírito Santo.     

Diversity and abundance of climbers from the Atlantic Forest, southeastern Brazil

Climbing plant community composition and abundance was compared between the Alto da Serra de Paranapiacaba Biological Reserve (ASPRB) and the Nascentes de Paranapiacaba Municipal Natural Park (NPMNP), two protected areas in the largest Atlantic Forest remnant, southeastern Brazil. Climbing plants ≥1 cm in diameter were sampled in 52 quadrats of 10 × 20 m (1.04 ha). From these data we calculated the Shannon–Wiener diversity index, calculated abundance and importance values for families, performed a principal coordinate analysis, and created a similarity dendrogram (TWINSPAN). The composition and abundance of species between ASPRB and NPMNP differed significantly due to the successional state of the ASPRB forest, which was affected by more recent disturbance. There we found 34 species, while in the NPMNP, species richness was 72, with only 24 species in common. The two areas formed two groups corresponding to two distinct floristic subsets. These montane forests were characterized by a predominance of species of the Asteraceae. The high species richness, floristic composition, and community composition reflect the greater degree of conservation in the area of NPMNP. The high density and community composition of climbers in the more conserved area of rainforest may be due to the low intensity of disturbance.     

Effects of forest fragmentation on genetic variation in endemic understory forest birds in central Madagascar

Summary This study focuses on some genetic consequences of habitat fragmentation in populations of four endemic bird species (Monticola sharpei, Terpsiphone mutata, Foudia omissa, andFoudia madagascariensis) living in the understory of forests in the Réserve Spéciale d'Ambohitantely on the Central High Plateau of Madagascar. The four species differ in their dependency on forest habitats, which may be related to their migration abilities between isolated forest fragments. Genetic variation was analysed on the basis of multi-locus fingerprints in order to study the influence of migration and habitat size on the genetic variability of local populations. There was no evidence that forest fragmentation affects any of the four species with respect to genetic variability.

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Effekte von Waldfragmentation auf die genetische Variabilität endemischer Vogelarten in Zentral-Madagaskar

Zusammenfassung Rund 53 % der Vogelarten Madagaskars sind endemisch. Viele dieser Arten sind an Waldhabitate gebunden und durch die Verinselung der madagassischen Wälder hochgradig bedroht. In dem vorliegenden Projekt wird die Auswirkung der Verinselung auf die genetische Variabilität und die genetische Differenzierung von vier endemischen Vogelarten am Beispiel des Reservats von Ambohitantely im zentralen Hochland Madagaskars untersucht. Ambohitantely beinhaltet mehr als 500 Waldfragmente von 0,64 ha bis 1250 ha. Untersucht wurden: 1. die WaldartFoudia omissa, 2.Monticola (früherPseudocossyphus)sharpei, eine Art mit starker Bevorzugung für primäre Waldlebensräume, die aber gelegentlich auch in Sekundärvegetation auftritt, sowie 3.Terpsiphone mutata und 4.Foudia madagascariensis, beides Arten, die sowohl in Wäldern als auch in offenen Landschaften vorkommen. Die unterschiedliche Abhängigkeit dieser Arten von Waldhabitaten und der damit verbundenen Möglichkeit, offene Landschaften zwischen den Waldfragmenten zu überbrücken, führte zur Frage, ob die Verinselung die genetische Vielfalt der untersuchten Populationen beeinflußt. Für die genetischen Analysen wurden Blutproben von Tieren aus drei Gebieten mit 1250 ha, 136 ha und 28 ha gesammelt. Die Proben wurden mit Multilocus-Fingerprints genetisch charakterisiert. Zum Untersuchungszeitpunkt konnte kein Einfluß der Fragmentierung auf die genetische Populationsstruktur der vier untersuchten Arten nachgewiesen werden.

     

Ferns,frogs, lizards,birds and bats in forest fragments and shade cacao plantations in two contrasting landscapes in the Atlantic forest,Brazil

The traditional shade cacao plantations (cabrucas) of southern Bahia, Brazil, are biologically rich habitats, encompassing many forest-dwelling species. However, a critical question for the conservation management of this specific region, and the highly fragmented Atlantic forest in general, is to what extent the conservation value of cabrucas relies on the presence of primary forest habitat in the landscape. We investigated the relative importance of cabrucas and forests for the conservation of five diverse biological groups (ferns, frogs, lizards, birds and bats) in two contrasting landscapes in southern Bahia, one dominated by forest with some interspersed cabrucas, and one dominated by cabrucas with interspersed forest fragments. The community structure (richness, abundance and diversity) of all biological groups differed between cabrucas and forests, although these differences varied among groups. A high number of forest species was found in the cabrucas. However, there were pronounced differences between the two landscapes with regard to the ability of cabrucas to maintain species richness. Irrespective of the biological group considered, cabrucas located in the landscape with few and small forest fragments supported impoverished assemblages compared to cabrucas located in the landscape with high forest cover. This suggests that a greater extent of native forest in the landscape positively influences the species richness of cabrucas. In the landscape with few small forest fragments interspersed into extensive areas of shade cacao plantations, the beta diversity of birds was higher than in the more forested landscape, suggesting that forest specialist species that rarely ventured into cabrucas were randomly lost from the fragments. These results stress both the importance and the vulnerability of the small forest patches remaining in landscapes dominated by shade plantations. They also point to the need to preserve sufficient areas of primary habitat even in landscapes where land use practices are generally favorable to the conservation of biodiversity.     

The anatomy of the syrinx in passerine birds

The macroscopical structure of the organ of voice in songbirds has long been known, but detailed information on the microscopical anatomy of the syrinx has generally been lacking. Observations based largely on macroscopical evidence have led to a number of erroneous interpretations of function of various syringeal components, and lacking microscopical information, the vocal mechanism of birds cannot be adequately understood.
A wide variety of passeriform bird syrinxes have been studied by means of serial sections. Although there is much less variation in syringeal anatomy amongst songbirds than there is in the other orders of birds, and although all songbird syrinxes conform to the same basic pattern, there is nevertheless marked variation in various syringeal components between different passerine groups. Variations in syringeal structure within families Corvidae ( Corvus corone, C. frugilegus ), Sturnidae ( Sturnus vulgaris, Gracula religiosa ), Turdidae ( Turdus merula, Erithacus rubecula ), Hirundinidae ( Delichon urbica ), Ploceidae ( Passer domesticus ) and Paridae ( Parus major, Aegithalos caudatus ) are described and discussed. The significance of these findings in relation to bird sound production is discussed.     

Conservation status of parrot populations in an Atlantic rainforest area of southeastern Brazil

A census of four species of syntopic parrots was carried out using distance sampling methods on São Sebastião island, SE Brazil. Most of the 33593 ha island is covered by mature and secondary Atlantic rainforest. Almost 80% of these forests are within the Ilhabela Park. Although the species counted have marked differences in size and weight, density (individuals/km²) and estimated population size in 23500 ha of well-preserved forests were similar: Amazona farinosa (13.82±5.94; 3247±1395), Pionus maximiliani (15.79±7.04; 3712±1654), Brotogeris tirica (15.05±4.87; 3537±1143) and Pyrrhura frontalis (13.06±5.53; 3068±1298). Encounter rates of Forpus crassirostris and Pionopsitta pileata were very low, which suggests that there is only a small population of these species on the island. The São Sebastião forests still support healthy populations of parrots. Although woodpecker population estimates on the island are large enough to provide nesting sites for parrots, competition for holes with other secondary cavity nesters such as toucans, flycatchers and tytiras, and the selective cutting of dead trees for canoe construction, which is a common practice on the island, may limit hole availability for parrots.     

Fine-scale sites of global conservation importance in the Atlantic forest of Brazil

The Brazilian Atlantic Forest is a highly threatened biodiversity hotspot that has been the subject of several complementary conservation assessments and priority-setting initiatives in the last 30 years. Results of these initiatives have relied on distinct types of distribution data for biodiversity features and differ in the objectivity and repeatability of their methodologies. Here we refine earlier priority-setting exercises using the key biodiversity areas (KBA) approach. We evaluate how well these KBAs are represented in the existing protected areas system, prioritize among them, and analyze critical aspects of the KBA methodology in the Brazilian Atlantic Forest context, such as its ability to guide specific conservation strategies. Building upon an extensive database with 1,636 species records and 122 previously identified Important Bird Areas, we demonstrate that conservation assessments in highly fragmented landscapes may be benefited by high resolution species data as is required by the KBA process. We identify 538 KBAs for 141 globally threatened vertebrate species. Prioritizing among these KBA, we highlight the 24 most irreplaceable sites for terrestrial vertebrate species conservation in the Atlantic Forest, based on existing data.     

Foraging patterns of breeding birds in eucalypt forest and woodland of southeastern Australia

The foraging ecology of eucalypt forest and woodland birds was studied on three 10 ha plots in southeastern Australia. Quantitative data were obtained for 41 species of which 31 were insectivorous, eight were nectar-feeders, and two were parrots that fed primarily on eucalypt seeds. Birds-of-prey, large omnivores and frugivores were uncommon. Insectivorous birds differed in foraging behaviour, the substrates on which they found prey, and foraging height. Nectar- feeders exploited a variety of carbohydrates including nectar, honeydew, lerp, manna and sap. Nectarivorous birds were separated by foraging behaviour, substrate, height and by the extent to which they used the different types of carbohydrates. Carbohydrates were also an important food resource for some insectivores. By understanding how birds exploit food resources within forest and woodland environments, the features of the environment which need to be conserved or manipulated to manage forest avifaunas can be identified. For example, in addition to the substrates such as foliage and bark, usually associated with the foraging of forest birds, carbohydrates and loose bark were identified as important resources for birds in eucalypt forests and woodlands. The broad importance of these two resources to the avifauna had not been previously appreciated, yet both may be sensitive to environmental changes associated with logging and other forest management practices which alter the composition or age-class structure of forests.     

Nested species assemblages as a tool to detect sensitivity to forest fragmentation: the case of cloud forest birds

In an ecological community, groups of species may or may not have a nested structure. Furthermore, any nested structure detected could have several causes, each of which would have to be identified, since they may have important theoretical and management implications. In this paper, I assessed the nested structure of bird communities using cloud forest fragments in eastern Mexico to identify bird species and groups of species sensitive to cloud forest fragmentation. Sensitive species were expected to have a nested arrangement highly correlated with forest fragmentation intensity. Analysis identified the following groups of birds as showing a nested structure highly correlated with cloud forest fragmentation: birds with a body mass between 100 and 300 g and larger than 600 g, some trophic behavioural guilds (terrestrial granivore, terrestrial granivore–frugivore, understory granivore–frugivore, arboreal granivore–frugivore, gleaning terrestrial insectivore, gleaning understory insectivore, cliff gleaning insectivore, nocturnal aerial insectivore, diurnal raptor, nocturnal raptor, terrestrial omnivore, scavenger), forest interior and generalist birds, species restricted to cloud forest, and threatened species. This study shows that the analysis of the nested species assemblage can be considered a useful tool to identify species sensitivity to ecological or landscape patterns and processes, in this case, species or groups of species affected by a fragmented landscape pattern.     

Cooperate or speciate: new theory for the distribution of passerine birds

In cooperatively breeding birds, adults often forego reproduction and help care for the offspring of others. A universal explanation for this mode of breeding has eluded evolutionary biologists, who have considered it to be a rare, and largely Australian, phenomenon. In a recent paper, Andrew Cockburn reports that the number of known cooperative breeders among oscine passerine birds has more than doubled since the last substantial review, published 16 years ago. Cooperative breeding is often the ancestral trait, and predominantly cooperative genera are species poor compared with their pair-breeding counterparts. Cockburn argues that speciation is less likely in cooperative clades, because the philopatric tendencies of individuals make them poor dispersers, colonizers and migrants. This new hypothesis helps explain the distribution and composition of migrant and island avifauna. However, a major challenge remains to reconcile the roles of phylogenetic history and current ecology in promoting cooperative behaviour.     

Effects of forest fragmentation on small mammals in an Atlantic Forest landscape

Recent studies on the effects of tropical forest fragmentation indicate that fragmented landscapes are complex and heterogeneous systems influenced by factors other than the size or degree of isolation of forest remnants: of particular importance are the quality of the matrix and the edge-induced habitat changes. In order to investigate the influence of these factors, small mammals were surveyed in 36 sites in the landscape of Una, a region that encompasses some of the last and largest Atlantic Forest remnants in northeastern Brazil. Six sites were distributed on each of six landscape components – the interiors and edges of small remnants, the interiors and edges of large remnants, and the most common forested habitats found in the matrix. The survey comprised 46,656 trap-nights and yielded 1725 individuals of 20 species of rodents and marsupials. Results revealed: an increase in beta-diversity caused by fragmentation; the contrasting effects of the altered forested habitats of the matrix, which harbor both forest and disturbance-adapted species; a greater importance of edge effect than of patch size to the observed changes in small mammal community in remnants; an association among terrestrial forest species and among arboreal forest species in terms of the distribution and abundance in the Una mosaic; and a distinctive vulnerability of these two groups of species to fragmentation. Results emphasize the biological importance and conservation value of both fragmented landscapes and small remnants in the Atlantic Forest, as well as the importance of management techniques to control and attenuate edge effects.