Responses of soil microbial catabolic diversity to arbuscular mycorrhizal inoculation and soil disinfection

Although it is usually admitted that arbuscular mycorrhizal (AM) fungi are key components in soil bio-functioning, little is known on the response of microbial functional diversity to AM inoculation. The aims of the present study were to determine the influence of Glomus intraradices inoculum densities on plant growth and soil microflora functional diversity in autoclaved soil or non-disinfected soil. Microbial diversity of soil treatments was assessed by measuring the patterns of in situ catabolic potential of microbial communities. The soil disinfection increased sorghum growth, but lowered catabolic evenness (4.8) compared to that recorded in the non-disinfected soil (6.5). G. intraradices inoculation induced a higher plant growth in the autoclaved soil than in the non-disinfected soil. This AM effect was positively related to inoculum density. Catabolic evenness and richness were positively correlated with the number of inoculated AM propagules in the autoclaved soil, but negatively correlated in the non-disinfected soil. In addition, after soil disinfection and AM inoculation, these microbial functionality indicators had higher values than in the autoclaved or in the non-disinfected soil without AM inoculation. These results are discussed in relation to the ecological influence of AM inoculation, with selected fungal strains and their associated microflora on native soil microbial activity.     

电子废弃物拆解区土壤重金属污染对丛枝菌根真菌多样性的影响

【背景】电子废弃物拆解造成的土壤重金属污染引发的环境问题日益突出,丛枝菌根(arbuscular mycorrhizal,AM)真菌能侵染植物根系并增强植物抵御环境胁迫的能力,具有重要的生态功能和应用潜力。【目的】探究电子废弃物拆解区土壤重金属污染对AM真菌群落结构与多样性的影响,甄别可耐受重金属污染的AM真菌类群。【方法】从浙江台州某典型电子废弃物拆解场地及其周边区域共采集土壤样品12份,针对土壤中AM真菌的18S rRNA基因进行高通量测序以及可操作分类单元(operational taxonomic unit,OTU)相对丰度和多样性指数计算。【结果】该区土壤中AM真菌由原囊霉目(Archaeosporales)、球囊霉目(Glomerales)和多孢囊霉目(Diversisporales)组成,其中球囊霉目占据优势地位。土壤AM真菌多样性指数与重金属的浓度、综合污染指数和潜在生态风险指数间均无显著相关性,但疑似泡囊根生囊霉(Rhizophagus vesiculiferus)的OTU相对丰度与上述重金属污染指标之间均呈显著正相关关系。【结论】R. vesiculiferus可能对重金属污染有极强耐受性,可为今后电子废弃物拆解污染土壤治理提供技术基础。     

Effects of mowing on fungal endophytes and arbuscular mycorrhizal fungi in subalpine grasslands

In French subalpine grasslands, cessation of mowing promotes dominance of Festuca paniculata, which alters plant diversity and ecosystem functioning. One of the mechanisms underpinning such effects may be linked to simultaneous changes in the abundance of fungal symbionts such as endophytes and arbuscular mycorrhizal fungi. In field conditions, mowing reduced the abundance of the endophyte Neotyphodium sp. in leaves of F. paniculata by a factor of 6, and increased mycorrhizal densities by a factor of 15 in the soil. In greenhouse experiments, the mycorrhizal colonization of Trifolium pratense and Allium porrum increased 3- fold and 3.8- fold respectively in mown vs unmown grassland soil. Significantly reduced growth of the two host plants was also observed on soil from the unmown grassland. Such opposite effects of mowing on the two functional groups of fungal symbionts could suggest interactions between these two groups, which in turn could contribute to structuring plant communities in subalpine grasslands.     

Detection of arbuscular mycorrhizal fungal spores in the air across different biomes and ecoregions

Aerial dispersal of fungal spores is common, but the role of wind and air movement in dispersal of spores of arbuscular mycorrhizal (AM) fungi is largely unknown. Several studies have examined the possibility of AM fungal spores being moved by wind vectors without observing spores taken from the air environment. For the first time this study observed the presence of AM fungal spores in the air. The frequency of AM fungal spores in the air was determined in six North American biomes composed of 18 ecoregions. Multiple samples were taken from both the air and the soil at each location. AM fungal spores were found in high abundance in the soil (hundreds of spores per gram of soil), however, they were rarely found in the air (most samples contained no AM fungal spores). Furthermore, only the Glomus morphotype was found in the air, whereas spores in the soil were taxomomically more diverse (Glomus, Acaulospora, Gigaspora, Scutellospora morphotypes were observed). The proportion of Glomus spores in the air relative to Glomus spores in the soil was highest in more arid systems, indicating that AM fungi may be more likely to be dispersed in the air in such systems. Nonetheless, the results indicate that the air is not likely a dominant mode of dispersal for AM fungi.     

Effect of drought and season on arbuscular mycorrhizal fungi in a subtropical secondary forest

Arbuscular mycorrhizal (AM) fungi in both soil and roots were examined in May (summer) and December (winter) under a 4-y drought experiment in a Chinese subtropical secondary forest. Drought significantly decreased AM fungal extra-radical hyphal density, spore density, and root colonization rate in both seasons. These AM parameters were significantly higher in summer than in winter in the control treatment, but only AM fungal extra-radical hyphal density exhibited the same seasonal trend in the drought treatment. In total, 45 AM fungal operational taxonomic units (OTUs) were obtained at a 97% sequence similarity level using Illumina sequencing of 18S rDNA. Drought and season had no significant effects on AM fungal OTU richness in soil and roots. AM fungal community composition in soil and roots was significantly affected by season but not by drought. This finding enhances our understanding of the response of AM fungi to global climate change in subtropical forest ecosystems.     

Uniting species- and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity

Arbuscular mycorrhizal fungi (AMF) occur in the majority of terrestrial, and some aquatic, habitats worldwide. They are important for the functioning of individual plants and of entire ecosystems. Here, we review trends in research on species- (species recognition, phylogenetic relationships, autecology) and community-level AMF diversity patterns and aim to identify ways of improving the complementarity of these approaches. Research into many aspects of AMF diversity has flourished in parallel with the increasing availability of molecular biology techniques. However, despite their shared goal of understanding AMF biodiversity, species- and community-level perspectives, and the morphological and molecular approaches that underpin them, currently have limited capacity for information exchange. We indicate critical research gaps in AMF species and community characterisation and outline important research directions. We propose steps that could link research using different methods and targeting different aspects of diversity, in order to maximise our understanding of AMF.     

Plant community and soil available nutrients drive arbuscular mycorrhizal fungal community shifts during alpine meadow degradation

Arbuscular mycorrhizal fungi (AMF) play an important role in maintaining the function and sustainability of grassland ecosystem, but they are also susceptible to environmental changes. In recent decades, alpine meadows on the Tibetan Plateau have experienced severe degradation due to the impact of human activities and climate change. But it remains unclear how degradation affects the AMF community, a group of functionally important root associated microorganisms, which potentially limit the development and application of microbial technologies in the restoration of degraded grasslands. In this study, we investigated AMF communities richness and composition in non-degraded (ND), moderately degraded (MD) and severely degraded (SD) alpine meadows on the Tibetan Plateau, and then explored their main biotic and abiotic determinants. Alpine meadow degradation significantly reduced plant community biomass, richness, soil organic carbon, total nitrogen, total phosphorus, available nitrogen and available phosphorus, but increased soil pH. AMF community composition and the iesdominant family and genera differed significantly among different degradation stages. Grassland degradation shifted the AMF community composition in favor of Claroideoglomus over Rhizophagus, and resulted in a marked loss of Glomeraceae and the dominance of Diversisporaceae. Alpine meadow degradation significantly increased AMF hyphal density and richness, likely working as a plant strategy to relieve nutrient deficiencies or loss as a result of degradation. The structural equation model showed that AMF community richness and composition were significantly influenced by plant community, followed by soil available nutrients. Soil available nutrients was the key contributor to the increased AMF hyphal density and richness during grassland degradation. Our findings identify the effects of alpine meadow degradation on AMF richness and highlight the importance of the plant community in shaping the AMF community during alpine meadow degradation. These results suggest that plant community restoration should be the primary goal for the ecological restoration of degraded alpine meadows, and these soil functional microorganisms should be simultaneously integrated into ecological restoration strategies and management.     

Global arbuscular mycorrhizal fungal diversity and abundance decreases with soil available phosphorus

Aim

Arbuscular mycorrhizal fungi (AMF) are widely distributed soil organisms that play critical roles in ecosystem functions. However, little is known about their global distribution and the underlying mechanisms. Here, we aimed to explore distribution pattern and key predictors of AMF diversity and abundance at the global scale.

Location

Global.

Time Period

1987–2022.

Major Taxa Studied

Arbuscular mycorrhizal fungi.

Methods

We investigated the distribution pattern and key predictors of AMF diversity and abundance at the global scale by compiling 654 field studies.

Results

We found that cold climate zones had relatively low AMF diversity. At the ecosystem level, grassland tended to have higher AMF diversity and abundance. Soil available phosphorus (P) and latitude were the most important predictors of AMF diversity. AMF richness and Shannon index decreased with increasing soil available P and latitude. Soil available P and soil pH were the main predictors for global distribution of AMF abundance. AMF colonization rate and spore abundance declined with soil available P and increased with soil pH. Mean annual precipitation was also an important, positive correlate of spore abundance.

Main Conclusions

Our findings highlight soil available P as an important predictor affecting the distribution of AMF diversity and abundance, advancing our understanding of the mechanisms underlying the distribution patterns of mycorrhizal fungal diversity and abundance at the global scale.     

Abundance of arbuscular mycorrhizal fungi spores in different environments in a tropical rain forest, Veracruz, Mexico

 The aim of this study was to compare mycorrhizal abundance and diversity in sites with different regimes of disturbance in a tropical rain forest at Los Tuxtlas, Veracruz, Mexico. Arbuscular mycorrhizal spores were quantified at two sites: closed canopy and gaps in the forest. Data were recorded during dry, rainy, and windy ("nortes") seasons. Spores of eight Glomus species, sporocarps of three Sclerocystis species, three species of Acaulospora and two of Gigaspora were found. Significant differences in the number of species and spores were found among seasons. The highest numbers of species and spores were observed during the dry season, with a marked decrease during the rainy season. Our results show that disturbance does not but seasonality does affect abundance and richness of mycorrhizal spores in this tropical wet forest. Accepted: 11 October 1998     

海南霸王岭热带雨林常见植物丛枝菌根真菌调查

对海南霸王岭热带雨林的12科16种常见植物的丛枝菌根状况进行了调查,用碱解离-酸性品红染色法进行了真菌鉴定。结果表明,13种植物形成典型的丛枝菌根,占所调查植物的81%;3种植物没有形成丛枝菌根,占所调查植物的19%。用湿筛沉淀法从这些植物根际土壤中共分离鉴定出了3属11种丛枝菌根真菌(AMF),即无梗囊霉属(Acaulos-pora)3种,球囊霉属(Glomus)7种,巨孢囊霉属(Gigaspora)1种;其中,球囊霉属是样地的优势属。在AMF中,孔窝无梗囊霉(A.foveata)分离频率最高,在14种植物的根际土中都有发现;此外,大果球囊霉(G.macrocarpum)的相对多度最大,为59%,具有最强的产孢能力。同时,在11种植物的根中发现了深色有隔内生真菌(DSE),占调查植物的69%;其中,11种植物同时被DSE和AMF感染。     

Small-scale spatial heterogeneity of arbuscular mycorrhizal fungal abundance and community composition in a wetland plant community

Although it has become increasingly clear that arbuscular mycorrhizal fungi (AMF) play important roles in population, community, and ecosystem ecology, there is limited information on the spatial structure of the community composition of AMF in the field. We assessed small-scale spatial variation in the abundance and molecular diversity of AMF in a calcareous fen, where strong underlying environmental gradients such as depth to water table may influence AMF. Throughout an intensively sampled 2 × 2 m plot, we assessed AMF inoculum potential at a depth of 0–6 and 6–12 cm and molecular diversity of the AMF community using terminal restriction fragment length polymorphism of 18S rDNA. Inoculum potential was only significantly spatially autocorrelated at a depth of 6–12 cm and was significantly positively correlated with depth to water table at both depths. Molecular diversity of the AMF community was highly variable within the plot, ranging from 2–14 terminal restriction fragments (T-RFs) per core, but the number of T-RFs did not relate to water table or plant species richness. Plant community composition was spatially autocorrelated at small scales, but AMF community composition showed no significant spatial autocorrelation. Saturated soils of calcareous fens contain many infective AMF propagules and the abundance and diversity of AMF inoculum is patchy over small spatial scales. An erratum to this article can be found at     

荒漠油蒿（Artemisia ordosica）根围AM真菌分布与土壤酶活性

于2007年10月在油蒿(Artemisia ordosica)集中分布区选取4个典型样地,分别从0～10cm、10～20cm、20～30cm、30～40cm和40～50cm土层采集根围土样,分离其丛枝菌根(arbuscular mycorrhiza,AM)真菌并测定了3种土壤酶活性.结果表明,在各样地0～50cm土层中油蒿根系AM真菌菌丝定殖率均很高,有典型的泡囊与丛枝结构.菌丝定殖率与泡囊定殖率呈显著正相关,但菌丝、泡囊和丛枝定殖率与AM真菌孢子密度和土壤酶活性之间都无相关性;孢子密度在不同样地及采样深度间差异明显,与土壤有机质、速效磷和速效氮含量都呈一定正相关关系.孢子密度与脲酶和酸性磷酸酶活性有显著或极显著相关关系,与碱性磷酸酶活性之间的相关性受到土壤pH的显著影响.孢子密度的峰值出现在0～10cm表层土,并随土壤剖面深度增加而降低.土壤酶活性在土壤垂直剖面显示与孢子密度同样的规律.不同样地间AM真菌分布及油蒿根系定殖率的差异表明,油蒿与AM真菌之间有良好共生性,对维护荒漠生态环境系统结构的完整性具有重要意义.     

Differences of arbuscular mycorrhizal fungal diversity and community between a cultivated land,an old field,and a never-cultivated field in a hot and arid ecosystem of southwest China

We investigated the spore density, species composition, and diversity of arbuscular mycorrhizal fungi (AMF) in a cultivated land (CL), an old field (OF), and a never-cultivated field (NCF), which are located adjacently in a slope in the hot and arid ecosystem of southwest China. AMF spores in the rhizosphere soils of representative plants in the three habitats were extracted by wet-sieving and decanting. A total of 47 taxa of AMF including 31 taxa from the genus Glomus, 8 from Acaulospora, 6 from Scutellospora, 1 from Entrophospora, and 1 from Gigaspora were extracted and identified morphologically. The highest spore density occurred in NCF, slightly lower in OF and lowest in CL, and the Shannon–Wiener index of species diversity was reversed. The dominant species of AMF were different in the three habitats. OF resembled NCF more than CL in AMF spore density, species richness, and community composition, which means that AMF community in the OF has been developing from cultivated land to natural habitat. Cluster analysis based on the similarity in AMF community composition indicated that the distribution of AMF was not random over space and that AMF community composition associated with a given plant species was greatly habitat-convergence. Following the cluster analysis, we hypothesized that the effect of habitats on AMF communities were greater than that of the host preference to AMF. L-F. Li and T. Li contributed equally to this work.     

Effects of nicosulfuron on the abundance and diversity of arbuscular mycorrhizal fungi used as indicators of pesticide soil microbial toxicity

The key role of arbuscular mycorrhizal (AM) fungi in maintaining soil fertility and ecosystem functioning and their general sensitivity to pesticides make them good candidate bioindicators in pesticide soil microbial toxicity assessment. We investigated the impact of the herbicide nicosulfuron on mycorrhizal colonization and community structure of AM fungi via a pot-to-field experimental approach. This allowed the assessment of nicosulfuron toxicity (i) at extreme exposure schemes (pot experiment, Tier I) invoked by the repeated application of a range of dose rates (x0, x10, x100, x1000 the recommended dose) and (ii) under realistic exposure scenarios (x0, x1, x2, x5 the recommended dose) in the field (Tier II). In the pot experiment, the x100 and x1000 dose rates significantly reduced plant biomass, mycorrhizal colonization and AM fungal richness as determined by DGGE. This coincided with the progressive accumulation of herbicide concentrations in soil. In contrast, no effects on AM fungi were observed at the nicosulfuron dose rates tested in the field. Clone libraries showed that the majority of AM fungi belonged to the Glomus group and were sensitive to the high levels of nicosulfuron accumulated in soil at the latter culture cycles. In contrast, a Paraglomeraceae and a Glomus etunicatum ribotype were present in maize roots in all cycles and dose rates implying a tolerance to nicosulfuron-induced stress. Overall, the deleterious effects of nicosulfuron on AM fungi induced by the highest dose rates in the pot experiment could be attributed either to fungal-driven toxicity or to plant-driven effects which have subsequent implications for mycorrhizal symbiosis. We suggest that the tiered pot-to-field experimental approach followed in our study combined with classic and standardized molecular tools could provide a realistic assessment of the toxicity of pesticides onto AM fungi as potential bioindicators.     

Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland

Although arbuscular mycorrhizal fungi (AMF) form spatially complex communities in terrestrial ecosystems, the scales at which this diversity manifests itself is poorly understood. This information is critical to the understanding of the role of AMF in plant community composition. We examined small-scale (submetre) variability of AMF community composition (terminal restriction fragment length polymorphism fingerprinting) and abundance (extraradical hyphal lengths) in two 1 m(2) plots situated in a native grassland ecosystem of western Montana. Extraradical AMF hyphal lengths varied greatly between samples (14-89 m g soil(-1)) and exhibited spatial structure at scales <30 cm. The composition of AMF communities was also found to exhibit significant spatial autocorrelation, with correlogram analyses suggesting patchiness at scales <50 cm. Supportive of overall AMF community composition analyses, individual AMF ribotypes corresponding to specific phylogenetic groups exhibited distinct spatial autocorrelation. Our results demonstrate that AMF diversity and abundance can be spatially structured at scales of <1 m. Such small-scale heterogeneity in the soil suggests that establishing seedlings may be exposed to very different, location dependent AMF communities. Our results also have direct implications for representative sampling of AMF communities in the field.     

Nitrogen and phosphorus additions impact arbuscular mycorrhizal abundance and molecular diversity in a tropical montane forest

Increased nitrogen (N) depositions expected in the future endanger the diversity and stability of ecosystems primarily limited by N, but also often co‐limited by other nutrients like phosphorus (P). In this context a nutrient manipulation experiment (NUMEX) was set up in a tropical montane rainforest in southern Ecuador, an area identified as biodiversity hotspot. We examined impacts of elevated N and P availability on arbuscular mycorrhizal fungi (AMF), a group of obligate biotrophic plant symbionts with an important role in soil nutrient cycles. We tested the hypothesis that increased nutrient availability will reduce AMF abundance, reduce species richness and shift the AMF community toward lineages previously shown to be favored by fertilized conditions. NUMEX was designed as a full factorial randomized block design. Soil cores were taken after 2 years of nutrient additions in plots located at 2000 m above sea level. Roots were extracted and intraradical AMF abundance determined microscopically; the AMF community was analyzed by 454‐pyrosequencing targeting the large subunit rDNA. We identified 74 operational taxonomic units (OTUs) with a large proportion of Diversisporales. N additions provoked a significant decrease in intraradical abundance, whereas AMF richness was reduced significantly by N and P additions, with the strongest effect in the combined treatment (39% fewer OTUs), mainly influencing rare species. We identified a differential effect on phylogenetic groups, with Diversisporales richness mainly reduced by N additions in contrast to Glomerales highly significantly affected solely by P. Regarding AMF community structure, we observed a compositional shift when analyzing presence/absence data following P additions. In conclusion, N and P additions in this ecosystem affect AMF abundance, but especially AMF species richness; these changes might influence plant community composition and productivity and by that various ecosystem processes.     

Seasonality of arbuscular mycorrhizal symbiosis and dark septate endophytes in a grassland site in southwest China

Arbuscular mycorrhizal and dark septate endophytic fungal colonization in a grassland in Kunming, southwest China, was investigated monthly over one year. All plant roots surveyed were co-colonized by arbuscular mycorrhizal and dark septate endophytic fungi in this grassland. Both arbuscular mycorrhizal and dark septate endophytic fungal colonization fluctuated significantly throughout the year, and their seasonal patterns were different in each plant species. The relationships between environmental (climatic and edaphic) factors and fungal colonization were also studied. Correlation analysis demonstrated that arbuscular mycorrhizal colonization was significantly correlative with environmental factors (rainfall, sunlight hours, soil P, etc.), but dark septate endophytic fungal colonization was only correlative with relative humidity and sunlight hours.