Effects of habitat change and geographical variation on the bird communities of two Indonesian islands

The effects of selective logging and other types of forest exploitation on bird communities are often studied latitudinally, i.e. a contemporaneous comparison of disturbed and pristine areas. Such an approach assumes that before disturbance those areas were equivalent. By comparing communities at a single site before and after disturbance, a so called longitudinal approach does not make that assumption but such studies can be resource intensive. In this study we adopt a latitudinal approach to explore the effects of disturbance on birds, but pay specific attention to whether natural geographically-based variation in the forest ecosystem may be a major contributory factor equal to, or greater than, effects of disturbance. Bird census data were collected from two Indonesian islands, Sumba and Buru. On Sumba the differences between habitat types in terms of species richness, species accumulation rates, and numbers of birds were swamped by simple site differences between the forest blocks sampled. On Buru, disturbed areas were more diverse than mature forest but it was still not possible to discount the effects of natural variation between forest areas. Although the islands support bird faunas which are rather similar in size and origin, local species diversities and abundances were significantly greater on Sumba. Substituting space for time is a common strategy in ecological research but the results of such studies should be viewed with caution.     

Seasonality and nestedness of bird communities in urban parks in Valencia,Spain

Although nested species subset patterns and mechanisms promoting them have constituted the focus of a considerable research effort, little attention has been paid to the role of seasonality in generating or moderating these patterns. I conducted monthly censuses of 130 urban parks in the city of Valencia throughout an annual cycle to assess whether seasonality influenced nested patterns of bird species assemblages. Specifically I tested the hypothesis that an increase in the movement of birds among parks outside of the breeding season, may reduce nestedness of resident birds. Results obtained in this study showed that assemblages of resident bird species were nested during the breeding season but not outside it, thus giving some support to the hypothesis. However, a reduction in nestedness outside the breeding season was not explained by an increase in the occupancy of parks but with an increase in the number of absences from parks that had been inhabited during the breeding season, most likely due to the use of habitats outside parks by some species (finches mainly). Results suggest the importance of both selective extinction and colonization processes in contributing to the degree of nestedness during the breeding season. However, environmental stress in the form of human disturbance apparently had little effect on the distributions of individual species. Habitat nestedness did not appear to be a factor as parks of all sizes were similar in number and type of habitats. An assessment of seasonality in other landscapes is needed to further understand its general effects on nestedness.     

Ecological assessment of plant communities by reference to species traits and habitat preferences

Where vegetation is managed for nature conservation, results should be assessed against criteria linked to the objectives of management. An assessment method is presented in which the goal vegetation was defined as a specific biotope limited by a set of biophysical conditions. Vegetation was sampled from field boundary strips intended for the conservation of arable plant communities. Species suited to the specified conditions (suited species) were defined by applying rule sets to a matrix of species with their traits and habitat preferences, compiled from a range of data sources. The proportional contribution of suited species to the total vegetation was calculated for each set of conditions. Scores for each condition (suited species scores) were combined to provide overall comparative site values representing the extent to which the goal vegetation was established. There was close correlation with results of a previous assessment by expert opinion poll. Variation between sites in soil type and cultivation frequency was reflected by differences in individual suited species scores. Ideally, suited species selection would be by traits alone but currently there are insufficient data available. The method is readily applicable to other vegetation types.     

Effects of habitat restoration on peatland bird communities

Restoration of damaged ecosystems has become an important tool to slow down biodiversity loss and to maintain ecosystem services. Peatland bird populations have shown a substantial decline during the recent decades in Northern Europe as a consequence of peatland drainage. We studied whether restoration of peatlands drained for forestry affects bird communities. We conducted bird surveys at 11 peatlands in Western Finland, where each of the restored and their pristine counterparts were surveyed before restoration and yearly after restoration during 2010–2018. We used linear mixed effect models to analyze whether restoration affected the number of species and territories of peatland specialist and non‐specialist species and permutational multivariate analysis of variance to analyze the change in community composition. Drained parts of the peatlands had higher number of territories of non‐specialist species before restoration, and restoration seemed to decrease these numbers towards the level of pristine parts. By contrast, restoration did not affect the number of peatland specialists and their territories, which was lower in drained than in pristine parts of the peatlands. Bird communities in restored parts remained different from pristine parts in terms of community composition after restoration. Thus, despite the effect of restoration on non‐specialists, a substantially long time may be required for a recovery of the peatland bird communities. Based on our results, it seems that long‐term monitoring of the restored and pristine peatlands is needed to determine whether restoration is effective in recovering the peatland specialist bird species and bird communities in general.     

Egg predation in forest bird communities on islands and mainland

Summary To examine if differences in egg predation rates could explain differences in bird community composition, egg predation was studied in two years on small islands in a South Swedish lake and on the nearby mainland using both natural and artificial nests.In plots with similar vegetation, the combined density of ground- and tree-nesting bird species did not differ between the islands and the mainland. Egg predation rates were similar on islands and the mainland for natural Turdus nests in two years, and for artificial Turdus and Phylloscopus nests. Unmarked and unvisited experimental nests suffered similar rate of egg predation as marked and visited nests. Egg predation rates were higher on natural nests when artificial nests were also put out, increasing the total nest density. Initial egg predation rates in artificial nests were also higher than later when nest density had decreased by 75%.The egg predators involved differed for artificial Phylloscopus nests between the islands and the mainland. Small mammals were apparently responsible for 29% of the predation on the mainland, but none on the islands. Artificial Turdus nests near crow nests suffered from a higher egg predation rate than nests further away from crow nests. Daily survival rates of Turdus nests increased from the laying to the incubation and further to the fledging state.Egg predation can not explain differences in bird community composition between islands and mainland in the present case.     

Multi-species spatially-explicit indicators reveal spatially structured trends in bird communities

Multi-species indicators are often used to assess biodiversity trends. By combining population trends across several species they summarise trends across a community. Composite indicators such as these are useful for examining general temporal patterns and may suggest important drivers of biodiversity change. However, they may also mask substantial spatial variation in population trends, particularly when they are calculated over large spatial regions. We produced spatially-explicit indicators for farmland and woodland bird communities in the UK and further separate these into trends for generalist and specialist species within each group. We found considerable spatial variation in the indicators, which is masked by indicators calculated at the national level. The farmland community indicator showed mostly positive trends in western areas and extensive declines in south-east England. The woodland community indicator showed a north–south divide, with increases in Scotland and northern England and stability in the southern regions. For both communities, indicator trends for specialist species were more negative than those for generalists. We found no significant difference in farmland community indicators between arable land and improved grassland. Woodland specialists had significantly more negative trends in broadleaf compared to coniferous woodlands, suggesting habitat-type is one of the drivers of changes in the woodland community. These spatial patterns in bird population trends may be used to highlight regional conservation priorities and identify where those may differ from the national scale. In combination with information about other environmental changes, they may also be used to develop hypotheses about potential drivers of change. We advocate that this approach is adopted for other taxa and geographical areas.     

Species–energy relationships and habitat complexity in bird communities

Species–energy theory is a commonly invoked theory predicting a positive relationship between species richness and available energy. The More Individuals Hypothesis (MIH) attempts to explain this pattern, and assumes that areas with greater food resources support more individuals, and that communities with more individuals include more species. Using a large dataset for North American birds, I tested these predictions of the MIH, and also examined the effect of habitat complexity on community structure. I found qualitative support for the relationships predicted by the MIH, however, the MIH alone was inadequate for fully explaining richness patterns. Communities in more productive sites had more individuals, but they also had more even relative abundance distributions such that a given number of individuals yielded a greater number of species. Richness and evenness were also higher in structurally complex forests compared to structurally more simple grasslands when controlling for available energy.     

Species assortment or habitat filtering: a case study of spider communities on lake islands

Competition theory predicts that species of similar ecological niches are less likely to coexist than species with different niches, a process called species assortment. In contrast, the concept of habitat filtering implies that species with similar ecological requirements should co-occur more often than expected by chance. Here we use environmental and ecological data to assess patterns of co-occurrence of regional communities of spiders distributed across two assemblies of lake islands in northern Poland. We found aggregated and random co-occurrences of species of the same genus and a significant tendency of species segregation across genera. We also found that species of the same genus react similarly to important environmental variables. A comparison of ecological traits of species of the local communities with those expected from a random sample from the regional Polish species pool corroborated partly the habitat filtering hypothesis. On the other hand, we did not find evidence for species assortment. Our results also imply that at least some observed species co-occurrences result from niche differentiation.     

Underdispersion and overdispersion of traits in terrestrial snail communities on islands

Understanding and disentangling different processes underlying the assembly and diversity of communities remains a key challenge in ecology. Species can assemble into communities either randomly or due to deterministic processes. Deterministic assembly leads to species being more similar (underdispersed) or more different (overdispersed) in certain traits than would be expected by chance. However, the relative importance of those processes is not well understood for many organisms, including terrestrial invertebrates. Based on knowledge of a broad range of species traits, we tested for the presence of trait underdispersion (indicating dispersal or environmental filtering) and trait overdispersion (indicating niche partitioning) and their relative importance in explaining land snail community composition on lake islands. The analysis of community assembly was performed using a functional diversity index (Rao's quadratic entropy) in combination with a null model approach. Regression analysis with the effect sizes of the assembly tests and environmental variables gave information on the strength of under‐ and overdispersion along environmental gradients. Additionally, we examined the link between community weighted mean trait values and environmental variables using a CWM‐RDA. We found both trait underdispersion and trait overdispersion, but underdispersion (eight traits) was more frequently detected than overdispersion (two traits). Underdispersion was related to four environmental variables (tree cover, habitat diversity, productivity of ground vegetation, and location on an esker ridge). Our results show clear evidence for underdispersion in traits driven by environmental filtering, but no clear evidence for dispersal filtering. We did not find evidence for overdispersion of traits due to diet or body size, but overdispersion in shell shape may indicate niche differentiation between snail species driven by small‐scale habitat heterogeneity. The use of species traits enabled us to identify key traits involved in snail community assembly and to detect the simultaneous occurrence of trait underdispersion and overdispersion.     

Plant functional traits reveal the relative contribution of habitat and food preferences to the diet of grasshoppers

Food preferences and food availability are two major determinants of the diet of generalist herbivores and of their spatial distribution. How do these factors interact and eventually lead to diet differentiation in co-occurring herbivores? We quantified the diet of four grasshopper species co-occurring in subalpine grasslands using DNA barcoding of the plants contained in the faeces of individuals sampled in the field. The food preferences of each grasshopper species were assessed by a choice (cafeteria) experiment from among 24 plant species common in five grassland plots, in which the four grasshoppers were collected, while the habitat was described by the relative abundance of plant species in the grassland plots. Plant species were characterised by their leaf economics spectrum (LES), quantifying their nutrient vs. structural tissue content. The grasshoppers’ diet, described by the mean LES of the plants eaten, could be explained by their plant preferences but not by the available plants in their habitat. The diet differed significantly across four grasshopper species pairs out of six, which validates food preferences assessed in standardised conditions as indicators for diet partitioning in nature. In contrast, variation of the functional diversity (FD) for LES in the diet was mostly correlated to the FD of the available plants in the habitat, suggesting that diet mixing depends on the environment and is not an intrinsic property of the grasshopper species. This study sheds light on the mechanisms determining the feeding niche of herbivores, showing that food preferences influence niche position whereas habitat diversity affects niche breadth.     

Functional homogenization of bird communities along habitat gradients: accounting for niche multidimensionality

Aim To test whether functional homogenization of bird communities is promoted by anthropogenic landscape transformation, using specialization and habitat preference indices that account for the multidimensionality of niches. Location Catalonia, north‐east Iberian Peninsula. Methods We used data on bird species occurrences and landscape features in 2834 1‐km² squares. Three orthogonal landscape gradients, which were taken as niche dimensions, were defined by means of principal components analysis (PCA). Specialization and habitat preference indices were created for 103 terrestrial bird species on the basis of their frequency of occurrence variation along the landscape gradients. These indices, together with species rarity, were then averaged for bird communities. We then analysed the patterns of variation of communities’ mean specialization, mean rarity and mean habitat preference values along a gradient of agricultural–forest habitat mosaics. Results Wherever we found a significant variation in the degree of specialization along the agricultural–forest gradient, agricultural habitats held more specialized bird communities than did forest ones and bore, on average, rarer species. Thus, results contradicted our initial hypothesis that humanized areas would bear more functionally homogenized bird communities. Higher α‐diversity values tended to be associated with generalist communities and with those having rarer species. Main conclusions Estimations of bird community specialization for different niche dimensions can behave differently along certain landscape gradients, and some of these differences can be explained by the variation of mean habitat preferences. Thus, we argue that a multidimensional approach to assess average niche breadth of communities can be more informative than a unidimensional measure. Our results suggest that widespread land abandonment and current secondary forest expansion throughout the Mediterranean area are promoting functional homogenization of bird communities. It would be desirable to construct larger‐scale indicators of functional homogenization in order to monitor communities’ responses to widespread landscape changes.     

Environmentally and behaviourally mediated co‐occurrence of functional traits in bird communities of tropical forest fragments

Two major theories of community assembly – based on the assumption of ‘limiting similarity’ or ‘habitat filtering’, respectively – predict contrasting patterns in the spatial arrangement of functional traits. Previous analyses have made progress in testing these predictions and identifying underlying processes, but have also pointed to theoretical as well as methodological shortcomings. Here we applied a recently developed methodology for spatially explicit analysis of phylogenetic meta‐community structure to study the pattern of co‐occurrence of functional traits in Afrotropical and Neotropical bird species inhabiting forest fragments. Focusing separately on locomotory, dietary, and dispersal traits, we tested whether environmental filtering causes spatial clustering, or competition leads to spatial segregation as predicted by limiting similarity theory. We detected significant segregation of species co‐occurrences in African fragments, but not in the Neotropical ones. Interspecific competition had a higher impact on trait co‐occurrence than filter effects, yet no single functional trait was able to explain the observed degree of spatial segregation among species. Despite high regional variability spanning from spatial segregation to aggregation, we found a consistent tendency for a clustered spatial patterning of functional traits among communities in fragmented landscapes, particularly in non‐territorial species. Overall, we show that behavioural effects, such as territoriality, and environmental effects, such as the area of forest remnants or properties of the landscape matrix in which they are embedded, can strongly affect the pattern of trait co‐occurrence. Our findings suggest that trait‐based analyses of community structure should include behavioural and environmental covariates, and we here provide an appropriate method for linking functional traits, species ecology and environmental conditions to clarify the drivers underlying spatial patterns of species co‐occurrence.     

Unexpected persistence on habitat islands: genetic signatures reveal dispersal of a eucalypt-dependent marsupial through a hostile pine matrix

Several factors contribute to the extinction of populations in fragmented habitat but key ones include habitat loss and disruptions to connectivity. Aspects of the ecology of greater gliders (Petauroides volans), along with observations of their response to native forest clearance at a site in southeastern Australia, lead to the prediction in the 1960s that the species would not persist in the replacement exotic pine plantation. However, 35 years later, the species was observed in many remnant native vegetation patches retained within the plantation boundary, albeit at a lower occupancy rate than at matched continuous forest control sites. To determine the role of patch connectivity in persistence of P. volans in remnants, we employed 12 microsatellite markers to genotype individuals from 11 remnants, three contemporary nearby continuous native eucalypt forest sites and a sample collected during native vegetation clearance at the site in the 1960s. Patch samples retained substantially more genetic diversity than expected under an isolation model, suggesting that patches have experienced some immigration. Five putative patch immigrants--two from sampled sites 1- and 7-km distant, and three from unresolved or unsampled localities--were identified via genetic parentage and population assignment analyses. Patch populations displayed varying levels of admixture in Bayesian genetic structure analyses, with the oldest and most geographically isolated ones showing the least admixture, suggesting they have experienced relatively little immigration. Evidence of at least some immigration into patches may explain why P. volans has persisted contrary to expectation in heavily fragmented habitat.     

Differences in habitat quality explain nestedness in a land snail meta-community

We set up two alternative hypotheses on how environmental variables could foster nestedness; one of “nested habitats” and another of “nested habitat quality”. The former hypothesis refers to situations where the nestedness of species depends on a nestedness of discrete habitats. The latter considers situations where all species in an assemblage increase in abundance along the same environmental gradient, but differ in specialisation or tolerance. We tested whether litter‐dwelling land snails (terrestrial gastropods) in boreal riparian forest exhibited a nested community structure, whether such a pattern was related to differences in environmental variables among sites, and which of the two hypotheses that best could account for the found pattern. We sampled litter from 100 m² plots in 29 mature riparian forest sites along small streams in the boreal zone of Sweden. The number of snail species varied between 3 and 14 per site. Ranking the species‐by‐site matrix by PCA scores of the first ordination axis revealed a similarly significant nested pattern as when the matrix was sorted by number of species, showing that the species composition in this meta‐community can be properly described as nested. Several environmental variables, most notably pH index, were correlated with the first PCA axis. All but two species had positive eigenvectors in the PCA ordination and the abundance increased considerably along the gradient for most of the species implying that the hypothesis of “nested habitats” was rejected in favour of the “nested habitat quality” hypothesis. Analyses of nestedness have seldom been performed on equal sized plots, and our study shows the importance of understanding that variation in environmental variables among sites can result in nested communities. The conservation implications are different depending on which of our two hypotheses is supported; a conservation focus on species “hotspots” is more appropriate if the communities are nested because of “nested habitat quality”.     

Winter bird communities in the northern Negev: species dispersal patterns, habitat use and implications for habitat conservation

Bird habitat conservation may require different management strategies for different seasonal bird assemblages. We studied habitat use by winter birds in forest and scrubland habitat patches in the northern Negev, Israel. Our goal was to assess whether differences in responses to landscape and habitat structure between breeding and non-breeding seasons require changes in future conservation plans that have been suggested for the Negev breeding bird community. We evaluated habitat and area effects on bird abundance and distribution and tested whether species habitat use during winter involves niche shifts. Compared with breeding birds, a larger proportion of winter bird species occupied both scrubland and forest. As in summer, forest bird species responded to habitat structure, whereas scrubland species were associated with both habitat structure and area. Resident birds disperse into habitats in which they were not present during summer. Consequently, for several species, the correlation between bird densities and environmental factors showed a better fit at the landscape rather than at the habitat scale. In addition, rather than niche shift, birds actually extended their niche breadth. Nest site selection may constrain bird distribution into a realized niche, smaller than their fundamental niche. Despite the scale differences in habitat use, the similar species diversity patterns between seasons suggest that both winter and summer birds would benefit from conservation of scrub patches larger than 50 ha, and enrichment of foliage layers within the planted forests.     

破碎化次生林斑块面积及栖息地质量对繁殖鸟类群落结构的影响

于1998～2000年夏季。运用GPS定位系统确定了12块面积范围为6．5～112．8hm。的彼此隔离的森林斑块。比较了斑块面积和栖息地质量对繁殖鸟类群落结构的影响。结果表明：不同面积斑块中繁殖鸟类的群落结构有所差异。各斑块所容纳的繁殖鸟类的物种数从4种到26种不等。鸟类物种数随着斑块面积的增大而增多。不同鸟类对斑块面积的反应并不相同,耐边缘种偏爱面积较小的斑块。而非边缘种偏爱在大面积的斑块中繁殖。斑块栖息地质量也是影响鸟类群落结构的重要因素,质量好的斑块包容的鸟类物种较多。鸟类物种丰富度与斑块质量的相关性(R2=0．67)小于与斑块面积的相关性(R2=0．88)。各斑块中的鸟类群落结构在不同年份间比较相似。栖息地破碎化不但缩小了栖息地面积。同时也不同程度地降低了栖息地的质量。从而消极地影响着鸟类群落结构的稳定性和鸟类的物种多样性。